Wall clock time and date at job start Tue Mar 31 2020 10:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52994 * 109.46772 * 2 1 4 4 C 1.52999 * 109.47259 * 120.00418 * 2 1 3 5 5 C 1.52998 * 109.47109 * 184.99969 * 4 2 1 6 6 C 1.47204 * 109.46852 * 304.99918 * 4 2 1 7 7 N 3.43546 * 81.12751 * 83.60538 * 2 1 3 8 8 N 1.46499 * 109.47535 * 64.99800 * 4 2 1 9 9 C 1.34777 * 120.00345 * 180.02562 * 8 4 2 10 10 O 1.21284 * 119.99721 * 0.27469 * 9 8 4 11 11 C 1.50701 * 120.00227 * 179.97438 * 9 8 4 12 12 C 1.52996 * 109.47064 * 179.97438 * 11 9 8 13 13 H 1.08994 * 109.47056 * 55.00268 * 12 11 9 14 14 C 1.50699 * 109.47078 * 295.00065 * 12 11 9 15 15 H 1.07995 * 120.00495 * 325.84479 * 14 12 11 16 16 C 1.37875 * 119.99736 * 145.84394 * 14 12 11 17 17 N 1.31510 * 120.00157 * 6.11650 * 16 14 12 18 18 Si 1.86810 * 119.99991 * 186.11459 * 16 14 12 19 19 H 1.48504 * 109.46634 * 90.00035 * 18 16 14 20 20 H 1.48497 * 109.47168 * 209.99908 * 18 16 14 21 21 H 1.48493 * 109.46929 * 330.00134 * 18 16 14 22 22 C 1.50701 * 109.47030 * 175.00201 * 12 11 9 23 23 C 1.38240 * 120.00055 * 63.45765 * 22 12 11 24 24 C 1.38233 * 119.99859 * 179.79009 * 23 22 12 25 25 C 1.38238 * 120.00054 * 0.43917 * 24 23 22 26 26 C 1.38240 * 119.99870 * 359.81806 * 25 24 23 27 27 C 1.38232 * 119.99857 * 243.73417 * 22 12 11 28 28 H 1.08999 * 109.46786 * 299.99510 * 1 2 3 29 29 H 1.08994 * 109.47587 * 60.00163 * 1 2 3 30 30 H 1.09006 * 109.47049 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46574 * 240.00037 * 2 1 3 32 32 H 1.09001 * 109.46715 * 180.02562 * 3 2 1 33 33 H 1.08998 * 109.47480 * 299.99746 * 3 2 1 34 34 H 1.08999 * 109.47064 * 60.00661 * 3 2 1 35 35 H 1.08992 * 109.47134 * 299.99984 * 5 4 2 36 36 H 1.09004 * 109.46747 * 59.99835 * 5 4 2 37 37 H 1.08998 * 109.46788 * 179.97438 * 5 4 2 38 38 H 0.97003 * 119.99719 * 359.97438 * 8 4 2 39 39 H 1.09004 * 109.47064 * 300.00226 * 11 9 8 40 40 H 1.09005 * 109.46558 * 59.99566 * 11 9 8 41 41 H 0.97005 * 120.00256 * 180.02562 * 17 16 14 42 42 H 1.07994 * 119.99650 * 0.02562 * 23 22 12 43 43 H 1.08002 * 120.00068 * 180.27605 * 24 23 22 44 44 H 1.07997 * 120.00240 * 179.83410 * 25 24 23 45 45 H 1.07997 * 119.99646 * 180.02562 * 26 25 24 46 46 H 1.08001 * 120.00466 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7213 1.2492 5 6 3.5649 -0.6134 1.3136 6 6 1.4531 -0.1008 2.4481 7 7 1.0002 0.3780 3.3732 8 7 1.6525 -2.1329 1.1905 9 6 1.9957 -2.9682 2.1911 10 8 2.6210 -2.5500 3.1424 11 6 1.5965 -4.4201 2.1310 12 6 2.1067 -5.1414 3.3801 13 1 1.7438 -4.6274 4.2701 14 6 3.6137 -5.1418 3.3796 15 1 4.1534 -5.2098 2.4467 16 6 4.3034 -5.0554 4.5703 17 7 3.6518 -5.0938 5.7120 18 14 6.1636 -4.8837 4.5619 19 1 6.5276 -3.4443 4.5330 20 1 6.7242 -5.5117 5.7852 21 1 6.7174 -5.5586 3.3607 22 6 1.6039 -6.5620 3.3804 23 6 1.9952 -7.4339 2.3815 24 6 1.5375 -8.7382 2.3842 25 6 0.6812 -9.1682 3.3807 26 6 0.2857 -8.2948 4.3765 27 6 0.7469 -6.9917 4.3762 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1299 1.4425 -0.0005 33 1 1.6766 1.9563 -0.8900 34 1 1.6767 1.9562 0.8900 35 1 3.9994 -1.0728 0.4259 36 1 3.8532 0.4370 1.3573 37 1 3.9281 -1.1269 2.2038 38 1 1.1483 -2.4663 0.4319 39 1 0.5101 -4.4966 2.0849 40 1 2.0311 -4.8799 1.2433 41 1 4.1370 -5.0326 6.5497 42 1 2.6615 -7.0970 1.6013 43 1 1.8467 -9.4207 1.6064 44 1 0.3215 -10.1865 3.3813 45 1 -0.3829 -8.6309 5.1552 46 1 0.4379 -6.3094 5.1544 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355463069.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:20 Heat of formation + Delta-G solvation = -15.282048 kcal Electronic energy + Delta-G solvation = -26481.421510 eV Core-core repulsion = 22948.869252 eV Total energy + Delta-G solvation = -3532.552259 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.34383 -39.92519 -38.77040 -36.59500 -35.75483 -34.23001 -33.36615 -31.49319 -31.39672 -30.06784 -28.11999 -27.22687 -25.46178 -24.28377 -23.12349 -22.66726 -21.59561 -20.69116 -18.69401 -18.45414 -17.99129 -17.21733 -16.52718 -16.42345 -15.95176 -15.77956 -15.59615 -15.35931 -14.98130 -14.80269 -14.43704 -14.16187 -14.04638 -13.91945 -13.71140 -13.70047 -13.53878 -13.35199 -13.15937 -13.03171 -12.88255 -12.79188 -12.65604 -12.48645 -12.40116 -12.00146 -11.80739 -11.74366 -11.71567 -11.65755 -11.28633 -10.91463 -10.57625 -10.28316 -10.19243 -9.52158 -9.16589 -8.02177 -6.04489 0.79921 0.86161 1.36637 1.41176 1.45697 1.48422 1.75171 1.94457 2.47739 2.50017 2.91752 3.21024 3.39364 3.57594 3.84665 4.11193 4.17770 4.27358 4.37126 4.42789 4.44618 4.57743 4.59798 4.68791 4.73003 4.77662 4.80361 4.83765 4.95611 4.99678 5.02848 5.03345 5.15977 5.26665 5.30864 5.38140 5.39845 5.48011 5.54730 5.56108 5.67419 5.80923 5.86011 5.97581 6.19563 6.43951 6.48772 6.51037 6.77568 7.04941 7.58085 7.60166 9.07660 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012672 B = 0.004478 C = 0.003730 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2209.068843 B = 6250.924819 C = 7504.702650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.081 4.081 3 C -0.154 4.154 4 C 0.277 3.723 5 C -0.165 4.165 6 C 0.231 3.769 7 N -0.487 5.487 8 N -0.715 5.715 9 C 0.511 3.489 10 O -0.540 6.540 11 C -0.116 4.116 12 C 0.081 3.919 13 H 0.015 0.985 14 C -0.476 4.476 15 H 0.056 0.944 16 C 0.020 3.980 17 N -0.922 5.922 18 Si 0.933 3.067 19 H -0.291 1.291 20 H -0.294 1.294 21 H -0.255 1.255 22 C -0.044 4.044 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.149 4.149 26 C -0.131 4.131 27 C -0.147 4.147 28 H 0.026 0.974 29 H 0.091 0.909 30 H 0.069 0.931 31 H 0.137 0.863 32 H 0.076 0.924 33 H 0.090 0.910 34 H 0.031 0.969 35 H 0.106 0.894 36 H 0.086 0.914 37 H 0.043 0.957 38 H 0.424 0.576 39 H 0.089 0.911 40 H 0.109 0.891 41 H 0.250 0.750 42 H 0.123 0.877 43 H 0.143 0.857 44 H 0.142 0.858 45 H 0.127 0.873 46 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.951 3.307 -19.642 20.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.100 4.100 3 C -0.211 4.211 4 C 0.187 3.813 5 C -0.224 4.224 6 C -0.088 4.088 7 N -0.164 5.164 8 N -0.374 5.374 9 C 0.298 3.702 10 O -0.414 6.414 11 C -0.156 4.156 12 C 0.062 3.938 13 H 0.034 0.966 14 C -0.514 4.514 15 H 0.075 0.925 16 C -0.178 4.178 17 N -0.562 5.562 18 Si 0.760 3.240 19 H -0.217 1.217 20 H -0.220 1.220 21 H -0.179 1.179 22 C -0.044 4.044 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.166 4.166 26 C -0.149 4.149 27 C -0.166 4.166 28 H 0.045 0.955 29 H 0.110 0.890 30 H 0.088 0.912 31 H 0.155 0.845 32 H 0.095 0.905 33 H 0.109 0.891 34 H 0.050 0.950 35 H 0.124 0.876 36 H 0.105 0.895 37 H 0.062 0.938 38 H 0.263 0.737 39 H 0.107 0.893 40 H 0.127 0.873 41 H 0.059 0.941 42 H 0.141 0.859 43 H 0.161 0.839 44 H 0.160 0.840 45 H 0.145 0.855 46 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -6.144 4.305 -17.362 18.913 hybrid contribution 1.028 0.055 0.905 1.371 sum -5.117 4.360 -16.456 17.776 Atomic orbital electron populations 1.21990 0.94097 1.03021 1.02265 1.21490 0.96752 0.97224 0.94558 1.21994 1.02583 0.94108 1.02459 1.18130 0.94743 0.81309 0.87119 1.22328 0.91610 1.03962 1.04516 1.30165 0.91864 0.92405 0.94407 1.81089 1.11499 1.11670 1.12123 1.46078 1.59715 1.06501 1.25082 1.21176 0.78168 0.89208 0.81623 1.90778 1.38739 1.77679 1.34251 1.21691 1.01435 0.90658 1.01790 1.17624 0.94745 0.88184 0.93265 0.96645 1.21004 0.90984 1.47574 0.91862 0.92537 1.25515 1.01152 0.95235 0.95882 1.70080 1.36334 1.52357 0.97433 0.85943 0.82871 0.77463 0.77683 1.21747 1.22044 1.17924 1.20560 0.92091 0.98446 0.93337 1.21062 1.00042 0.93843 0.99202 1.21396 0.97817 0.95655 0.99418 1.21257 0.99908 1.00060 0.95417 1.21256 1.00817 0.93291 0.99495 1.21080 0.99785 0.96828 0.98861 0.95491 0.89049 0.91242 0.84478 0.90502 0.89099 0.95010 0.87562 0.89496 0.93828 0.73671 0.89261 0.87265 0.94142 0.85924 0.83906 0.83990 0.85482 0.89537 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.12 8.74 71.98 0.63 -1.49 16 2 C -0.08 -1.08 2.32 -10.79 -0.03 -1.10 16 3 C -0.15 -1.96 8.51 71.98 0.61 -1.35 16 4 C 0.28 6.63 0.51 1.80 0.00 6.63 16 5 C -0.17 -4.11 7.87 71.98 0.57 -3.55 16 6 C 0.23 7.82 10.21 89.44 0.91 8.73 16 7 N -0.49 -19.78 18.54 20.01 0.37 -19.41 16 8 N -0.72 -17.59 4.81 -431.20 -2.08 -19.67 16 9 C 0.51 18.95 6.99 87.66 0.61 19.56 16 10 O -0.54 -26.79 12.20 -3.04 -0.04 -26.83 16 11 C -0.12 -4.14 4.95 29.85 0.15 -3.99 16 12 C 0.08 3.90 1.67 -12.29 -0.02 3.88 16 13 H 0.02 0.90 6.97 -2.39 -0.02 0.88 16 14 C -0.48 -25.32 6.38 25.60 0.16 -25.16 16 15 H 0.06 2.87 7.82 -2.91 -0.02 2.85 16 16 C 0.02 1.17 5.45 84.65 0.46 1.64 16 17 N -0.92 -57.69 12.87 21.45 0.28 -57.42 16 18 Si 0.93 46.42 29.54 68.60 2.03 48.44 16 19 H -0.29 -14.77 7.11 99.48 0.71 -14.07 16 20 H -0.29 -14.68 7.11 99.48 0.71 -13.97 16 21 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 22 C -0.04 -1.92 4.77 -19.87 -0.09 -2.01 16 23 C -0.12 -4.58 8.86 22.27 0.20 -4.39 16 24 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 25 C -0.15 -4.56 10.05 22.27 0.22 -4.34 16 26 C -0.13 -4.64 10.05 22.27 0.22 -4.42 16 27 C -0.15 -6.40 9.67 22.27 0.22 -6.18 16 28 H 0.03 0.53 7.09 -2.39 -0.02 0.51 16 29 H 0.09 0.78 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.83 7.18 -2.38 -0.02 0.82 16 31 H 0.14 0.88 8.14 -2.39 -0.02 0.86 16 32 H 0.08 0.86 6.35 -2.39 -0.02 0.85 16 33 H 0.09 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.03 0.56 7.38 -2.39 -0.02 0.55 16 35 H 0.11 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.09 1.80 6.35 -2.39 -0.02 1.79 16 37 H 0.04 1.57 6.18 -2.39 -0.01 1.55 16 38 H 0.42 6.49 7.65 -92.71 -0.71 5.78 16 39 H 0.09 2.76 8.14 -2.39 -0.02 2.74 16 40 H 0.11 3.25 7.78 -2.38 -0.02 3.23 16 41 H 0.25 15.30 8.31 -92.70 -0.77 14.53 16 42 H 0.12 4.23 7.76 -2.91 -0.02 4.21 16 43 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 44 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.13 3.84 8.06 -2.91 -0.02 3.81 16 46 H 0.09 4.08 7.95 -2.91 -0.02 4.06 16 Total: -1.00 -81.92 375.96 5.88 -76.03 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: 0.27 Total: 20.05 kcal Atomic # 6 Polarization: -26.26 SS G_CDS: 5.05 Total: -21.20 kcal Atomic # 7 Polarization: -95.07 SS G_CDS: -1.43 Total: -96.50 kcal Atomic # 8 Polarization: -26.79 SS G_CDS: -0.04 Total: -26.83 kcal Atomic # 14 Polarization: 46.42 SS G_CDS: 2.03 Total: 48.44 kcal Total: -81.92 5.88 -76.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355463069.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.752 kcal (2) G-P(sol) polarization free energy of solvation -81.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds