Wall clock time and date at job start Tue Mar 31 2020 10:45:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47391 * 2 1 4 4 C 1.53005 * 109.47104 * 120.00116 * 2 1 3 5 5 C 1.52997 * 109.47040 * 54.99627 * 4 2 1 6 6 C 1.47195 * 109.46747 * 294.99507 * 4 2 1 7 7 N 3.43554 * 86.99974 * 79.49234 * 2 1 3 8 8 N 1.46502 * 109.46864 * 174.99336 * 4 2 1 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 4 2 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 4 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 4 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31513 * 119.99678 * 353.27932 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09004 * 109.47007 * 300.00149 * 1 2 3 29 29 H 1.08996 * 109.47011 * 59.99381 * 1 2 3 30 30 H 1.08998 * 109.47470 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47007 * 239.99851 * 2 1 3 32 32 H 1.09004 * 109.47029 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46880 * 299.99870 * 3 2 1 34 34 H 1.08996 * 109.47413 * 60.00040 * 3 2 1 35 35 H 1.09005 * 109.47271 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.47520 * 299.99848 * 5 4 2 37 37 H 1.09005 * 109.47303 * 59.99920 * 5 4 2 38 38 H 0.97002 * 120.00062 * 0.02562 * 8 4 2 39 39 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 40 40 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 41 41 H 0.96999 * 120.00609 * 354.68773 * 17 16 14 42 42 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 43 43 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 44 44 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 45 45 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4299 -2.1229 1.3137 6 6 1.6507 0.0390 2.4480 7 7 1.3502 0.6257 3.3733 8 7 3.5001 -0.8265 1.1905 9 6 4.1731 -1.4285 2.1911 10 8 3.5699 -1.8834 3.1399 11 6 5.6750 -1.5362 2.1309 12 6 6.1850 -2.2577 3.3801 13 1 5.8072 -1.7543 4.2700 14 6 5.7029 -3.6854 3.3677 15 1 5.4900 -4.1753 2.4290 16 6 5.5337 -4.3662 4.5546 17 7 5.9167 -3.8185 5.6872 18 14 4.7672 -6.0698 4.5531 19 1 4.7034 -6.5850 5.9444 20 1 3.3953 -5.9948 3.9896 21 1 5.5936 -6.9836 3.7242 22 6 7.6918 -2.2363 3.3925 23 6 8.4007 -2.9167 2.4201 24 6 9.7829 -2.8935 2.4290 25 6 10.4562 -2.1974 3.4154 26 6 9.7473 -1.5214 4.3908 27 6 8.3651 -1.5410 4.3794 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.7935 -2.6369 2.2035 36 1 0.3435 -2.0446 1.3574 37 1 1.7182 -2.6859 0.4259 38 1 3.9824 -0.4623 0.4318 39 1 6.1094 -0.5376 2.0848 40 1 5.9637 -2.0993 1.2433 41 1 6.3876 -2.9704 5.6810 42 1 7.8747 -3.4640 1.6518 43 1 10.3366 -3.4215 1.6668 44 1 11.5360 -2.1815 3.4239 45 1 10.2733 -0.9773 5.1612 46 1 7.8113 -1.0127 5.1413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000355463075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:32 Heat of formation + Delta-G solvation = 1.938595 kcal Electronic energy + Delta-G solvation = -26514.591183 eV Core-core repulsion = 22982.785667 eV Total energy + Delta-G solvation = -3531.805516 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.16842 -38.61319 -37.53790 -35.34016 -34.31596 -33.14081 -31.40574 -30.33817 -30.12398 -28.80827 -27.26508 -25.21093 -24.18871 -22.84763 -21.76157 -21.67795 -20.34513 -19.46948 -17.58136 -16.97985 -16.54258 -15.96394 -15.41523 -14.87099 -14.76788 -14.46981 -14.10984 -13.90244 -13.66921 -13.38677 -13.34484 -13.12658 -12.74087 -12.62994 -12.51399 -12.41510 -12.37228 -12.17754 -11.96711 -11.81220 -11.69843 -11.48509 -11.30717 -11.11778 -10.91606 -10.88296 -10.73229 -10.45231 -10.15055 -10.05443 -9.71252 -9.06814 -8.99811 -8.63868 -8.29802 -8.15549 -7.65796 -6.23214 -3.93043 2.17339 2.22380 2.69996 2.97342 3.26926 3.48610 3.53886 3.64933 3.69909 3.99396 4.39004 4.59198 4.63502 4.66432 4.76544 5.14472 5.21358 5.36116 5.41825 5.54084 5.57870 5.58325 5.61563 5.62241 5.69958 5.71990 5.74356 5.82773 5.94610 5.97665 5.98871 6.02771 6.13976 6.29873 6.39510 6.42944 6.62063 6.65939 6.76789 6.90727 7.18711 7.21023 7.35785 7.70570 7.73327 7.83483 7.85566 8.20046 8.49835 8.84704 8.95660 9.76361 11.16015 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.004429 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.233305 B = 6321.121902 C = 7553.901520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.092 4.092 3 C -0.155 4.155 4 C 0.282 3.718 5 C -0.168 4.168 6 C 0.214 3.786 7 N -0.426 5.426 8 N -0.739 5.739 9 C 0.513 3.487 10 O -0.484 6.484 11 C -0.115 4.115 12 C 0.073 3.927 13 H 0.049 0.951 14 C -0.568 4.568 15 H 0.046 0.954 16 C 0.032 3.968 17 N -0.905 5.905 18 Si 1.059 2.941 19 H -0.285 1.285 20 H -0.288 1.288 21 H -0.290 1.290 22 C -0.033 4.033 23 C -0.106 4.106 24 C -0.130 4.130 25 C -0.152 4.152 26 C -0.125 4.125 27 C -0.130 4.130 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.069 0.931 31 H 0.098 0.902 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.055 0.945 35 H 0.093 0.907 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.401 0.599 39 H 0.066 0.934 40 H 0.083 0.917 41 H 0.271 0.729 42 H 0.116 0.884 43 H 0.108 0.892 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.125 7.260 -15.752 17.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.112 4.112 3 C -0.212 4.212 4 C 0.192 3.808 5 C -0.226 4.226 6 C -0.106 4.106 7 N -0.102 5.102 8 N -0.397 5.397 9 C 0.300 3.700 10 O -0.353 6.353 11 C -0.155 4.155 12 C 0.053 3.947 13 H 0.067 0.933 14 C -0.605 4.605 15 H 0.065 0.935 16 C -0.173 4.173 17 N -0.540 5.540 18 Si 0.888 3.112 19 H -0.210 1.210 20 H -0.215 1.215 21 H -0.217 1.217 22 C -0.034 4.034 23 C -0.124 4.124 24 C -0.148 4.148 25 C -0.170 4.170 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.112 0.888 36 H 0.088 0.912 37 H 0.095 0.905 38 H 0.237 0.763 39 H 0.085 0.915 40 H 0.101 0.899 41 H 0.082 0.918 42 H 0.134 0.866 43 H 0.126 0.874 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -4.517 6.551 -12.593 14.897 hybrid contribution 1.043 1.073 -1.595 2.187 sum -3.474 7.624 -14.188 16.477 Atomic orbital electron populations 1.21951 0.93666 1.02973 1.02422 1.21394 0.97203 0.96605 0.95980 1.21948 1.01602 0.95259 1.02430 1.17606 0.82587 0.93945 0.86677 1.22344 1.00803 0.93854 1.05635 1.29257 0.93770 0.93171 0.94401 1.81110 1.08124 1.10747 1.10189 1.46393 1.04575 1.62977 1.25725 1.21023 0.90841 0.76558 0.81559 1.90760 1.69396 1.43088 1.32073 1.21673 0.90148 1.00775 1.02902 1.17869 0.86312 0.97531 0.92946 0.93316 1.21505 1.48054 0.96138 0.94833 0.93547 1.25565 0.95497 1.04014 0.92271 1.70729 1.35719 1.19638 1.27891 0.83701 0.76317 0.75303 0.75873 1.20998 1.21458 1.21702 1.20836 0.98526 0.91666 0.92338 1.20918 0.92983 0.98929 0.99566 1.21018 0.94802 1.00164 0.98851 1.20829 0.98627 1.00813 0.96752 1.20968 0.94451 1.00344 0.98514 1.21080 0.93845 1.00592 0.99325 0.92544 0.91636 0.91253 0.88406 0.91970 0.91665 0.92559 0.88828 0.91162 0.90534 0.76346 0.91525 0.89878 0.91769 0.86631 0.87435 0.87584 0.87471 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.51 37.16 0.32 -0.85 16 2 C -0.09 -0.76 2.32 -90.62 -0.21 -0.97 16 3 C -0.15 -1.25 8.74 37.15 0.32 -0.92 16 4 C 0.28 3.52 0.51 -134.61 -0.07 3.46 16 5 C -0.17 -2.15 7.87 37.16 0.29 -1.86 16 6 C 0.21 3.48 10.22 -20.76 -0.21 3.27 16 7 N -0.43 -8.07 18.54 42.16 0.78 -7.29 16 8 N -0.74 -9.68 4.81 -50.23 -0.24 -9.92 16 9 C 0.51 9.49 7.00 -10.99 -0.08 9.41 16 10 O -0.48 -11.40 12.22 5.55 0.07 -11.33 16 11 C -0.11 -2.09 4.95 -27.88 -0.14 -2.23 16 12 C 0.07 1.69 1.23 -92.92 -0.11 1.58 16 13 H 0.05 1.31 6.59 -51.93 -0.34 0.97 16 14 C -0.57 -14.95 6.35 -34.44 -0.22 -15.17 16 15 H 0.05 1.21 7.82 -52.48 -0.41 0.80 16 16 C 0.03 0.92 5.45 -17.82 -0.10 0.82 16 17 N -0.90 -27.60 13.56 55.43 0.75 -26.85 16 18 Si 1.06 25.87 29.91 -169.99 -5.08 20.79 16 19 H -0.28 -7.08 7.11 56.52 0.40 -6.67 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 C -0.03 -0.71 4.53 -104.62 -0.47 -1.19 16 23 C -0.11 -2.10 8.90 -39.58 -0.35 -2.45 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.69 16 25 C -0.15 -2.61 10.05 -39.58 -0.40 -3.00 16 26 C -0.12 -2.27 10.05 -39.58 -0.40 -2.67 16 27 C -0.13 -2.71 9.18 -39.58 -0.36 -3.07 16 28 H 0.06 0.52 7.38 -51.93 -0.38 0.14 16 29 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.07 0.49 6.34 -51.93 -0.33 0.16 16 31 H 0.10 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.57 7.09 -51.93 -0.37 0.21 16 35 H 0.09 1.63 6.17 -51.93 -0.32 1.31 16 36 H 0.07 0.76 6.34 -51.93 -0.33 0.43 16 37 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 38 H 0.40 3.76 7.65 -40.82 -0.31 3.45 16 39 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 40 H 0.08 1.37 7.96 -51.93 -0.41 0.95 16 41 H 0.27 8.17 6.24 -40.82 -0.25 7.92 16 42 H 0.12 2.21 7.85 -52.48 -0.41 1.80 16 43 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 45 H 0.11 1.68 8.06 -52.49 -0.42 1.25 16 46 H 0.11 2.28 7.95 -52.49 -0.42 1.86 16 LS Contribution 373.72 15.07 5.63 5.63 Total: -1.00 -34.66 373.72 -7.52 -42.18 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -6.84 Total: 5.33 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -2.59 Total: -18.54 kcal Atomic # 7 Polarization: -45.35 SS G_CDS: 1.29 Total: -44.05 kcal Atomic # 8 Polarization: -11.40 SS G_CDS: 0.07 Total: -11.33 kcal Atomic # 14 Polarization: 25.87 SS G_CDS: -5.08 Total: 20.79 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.66 -7.52 -42.18 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355463075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.117 kcal (2) G-P(sol) polarization free energy of solvation -34.656 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.939 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds