Wall clock time and date at job start Tue Mar 31 2020 10:45:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52992 * 109.47391 * 2 1 4 4 C 1.53005 * 109.47104 * 120.00116 * 2 1 3 5 5 C 1.52997 * 109.47040 * 54.99627 * 4 2 1 6 6 C 1.47195 * 109.46747 * 294.99507 * 4 2 1 7 7 N 3.43554 * 86.99974 * 79.49234 * 2 1 3 8 8 N 1.46502 * 109.46864 * 174.99336 * 4 2 1 9 9 C 1.34777 * 119.99559 * 179.97438 * 8 4 2 10 10 O 1.21283 * 120.00046 * 0.02562 * 9 8 4 11 11 C 1.50698 * 119.99686 * 180.02562 * 9 8 4 12 12 C 1.53005 * 109.46990 * 180.02562 * 11 9 8 13 13 H 1.08994 * 109.46934 * 305.97546 * 12 11 9 14 14 C 1.50700 * 109.47299 * 65.97885 * 12 11 9 15 15 H 1.08008 * 119.99531 * 26.90748 * 14 12 11 16 16 C 1.37869 * 120.00160 * 206.90965 * 14 12 11 17 17 N 1.31513 * 119.99678 * 353.27932 * 16 14 12 18 18 Si 1.86806 * 120.00073 * 173.54969 * 16 14 12 19 19 H 1.48497 * 109.46895 * 179.72442 * 18 16 14 20 20 H 1.48495 * 109.46957 * 299.72695 * 18 16 14 21 21 H 1.48501 * 109.46761 * 59.72686 * 18 16 14 22 22 C 1.50705 * 109.47056 * 185.97689 * 12 11 9 23 23 C 1.38237 * 120.00118 * 294.44966 * 22 12 11 24 24 C 1.38237 * 119.99818 * 179.78603 * 23 22 12 25 25 C 1.38236 * 120.00003 * 0.44191 * 24 23 22 26 26 C 1.38236 * 119.99991 * 359.81061 * 25 24 23 27 27 C 1.38228 * 119.99825 * 114.71859 * 22 12 11 28 28 H 1.09004 * 109.47007 * 300.00149 * 1 2 3 29 29 H 1.08996 * 109.47011 * 59.99381 * 1 2 3 30 30 H 1.08998 * 109.47470 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47007 * 239.99851 * 2 1 3 32 32 H 1.09004 * 109.47029 * 180.02562 * 3 2 1 33 33 H 1.09005 * 109.46880 * 299.99870 * 3 2 1 34 34 H 1.08996 * 109.47413 * 60.00040 * 3 2 1 35 35 H 1.09005 * 109.47271 * 179.97438 * 5 4 2 36 36 H 1.09003 * 109.47520 * 299.99848 * 5 4 2 37 37 H 1.09005 * 109.47303 * 59.99920 * 5 4 2 38 38 H 0.97002 * 120.00062 * 0.02562 * 8 4 2 39 39 H 1.09000 * 109.47229 * 60.00363 * 11 9 8 40 40 H 1.09003 * 109.47630 * 300.00294 * 11 9 8 41 41 H 0.96999 * 120.00609 * 354.68773 * 17 16 14 42 42 H 1.08005 * 119.99967 * 359.97438 * 23 22 12 43 43 H 1.07999 * 119.99448 * 180.27078 * 24 23 22 44 44 H 1.07997 * 119.99991 * 179.83259 * 25 24 23 45 45 H 1.07993 * 119.99965 * 180.02562 * 26 25 24 46 46 H 1.07999 * 120.00249 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.4299 -2.1229 1.3137 6 6 1.6507 0.0390 2.4480 7 7 1.3502 0.6257 3.3733 8 7 3.5001 -0.8265 1.1905 9 6 4.1731 -1.4285 2.1911 10 8 3.5699 -1.8834 3.1399 11 6 5.6750 -1.5362 2.1309 12 6 6.1850 -2.2577 3.3801 13 1 5.8072 -1.7543 4.2700 14 6 5.7029 -3.6854 3.3677 15 1 5.4900 -4.1753 2.4290 16 6 5.5337 -4.3662 4.5546 17 7 5.9167 -3.8185 5.6872 18 14 4.7672 -6.0698 4.5531 19 1 4.7034 -6.5850 5.9444 20 1 3.3953 -5.9948 3.9896 21 1 5.5936 -6.9836 3.7242 22 6 7.6918 -2.2363 3.3925 23 6 8.4007 -2.9167 2.4201 24 6 9.7829 -2.8935 2.4290 25 6 10.4562 -2.1974 3.4154 26 6 9.7473 -1.5214 4.3908 27 6 8.3651 -1.5410 4.3794 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 3.1301 1.4423 -0.0005 33 1 1.6767 1.9562 -0.8900 34 1 1.6768 1.9563 0.8899 35 1 1.7935 -2.6369 2.2035 36 1 0.3435 -2.0446 1.3574 37 1 1.7182 -2.6859 0.4259 38 1 3.9824 -0.4623 0.4318 39 1 6.1094 -0.5376 2.0848 40 1 5.9637 -2.0993 1.2433 41 1 6.3876 -2.9704 5.6810 42 1 7.8747 -3.4640 1.6518 43 1 10.3366 -3.4215 1.6668 44 1 11.5360 -2.1815 3.4239 45 1 10.2733 -0.9773 5.1612 46 1 7.8113 -1.0127 5.1413 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000355463075.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:45:31 Heat of formation + Delta-G solvation = -19.867941 kcal Electronic energy + Delta-G solvation = -26515.536786 eV Core-core repulsion = 22982.785667 eV Total energy + Delta-G solvation = -3532.751118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.43985 -40.08839 -38.85579 -36.64764 -36.06674 -34.30936 -33.25373 -31.60943 -31.45271 -30.17794 -28.07151 -26.88126 -25.47245 -24.46458 -23.20062 -22.72384 -21.76945 -20.93970 -18.96080 -18.58992 -18.05817 -17.31087 -16.55784 -16.39254 -15.92811 -15.69077 -15.63481 -15.50517 -15.04929 -14.83957 -14.65048 -14.33933 -14.05791 -13.97773 -13.92138 -13.74357 -13.62491 -13.36075 -13.21689 -13.05564 -12.87819 -12.68689 -12.61334 -12.58166 -12.07478 -12.03771 -11.95330 -11.77007 -11.75040 -11.70555 -11.49458 -10.68789 -10.55126 -10.32375 -10.27374 -9.63744 -9.26168 -8.41996 -6.09349 0.68110 0.74129 1.42326 1.48896 1.59485 1.70323 1.74243 1.83015 2.42254 2.64165 2.86509 3.11372 3.38896 3.53564 3.80566 4.03249 4.12530 4.13799 4.28246 4.29798 4.38306 4.45066 4.50777 4.57004 4.64489 4.69405 4.77021 4.80479 4.84410 4.88263 4.96400 5.00984 5.11188 5.13520 5.24254 5.27398 5.34224 5.41233 5.44006 5.45578 5.49669 5.75262 5.82922 5.96418 6.24904 6.32564 6.42220 6.45971 6.67816 6.79112 7.47516 7.67270 8.97925 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.012875 B = 0.004429 C = 0.003706 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2174.233305 B = 6321.121902 C = 7553.901520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.081 4.081 3 C -0.157 4.157 4 C 0.277 3.723 5 C -0.166 4.166 6 C 0.230 3.770 7 N -0.485 5.485 8 N -0.713 5.713 9 C 0.512 3.488 10 O -0.544 6.544 11 C -0.110 4.110 12 C 0.074 3.926 13 H -0.004 1.004 14 C -0.549 4.549 15 H 0.048 0.952 16 C -0.028 4.028 17 N -0.949 5.949 18 Si 1.095 2.905 19 H -0.296 1.296 20 H -0.282 1.282 21 H -0.263 1.263 22 C -0.055 4.055 23 C -0.118 4.118 24 C -0.124 4.124 25 C -0.145 4.145 26 C -0.127 4.127 27 C -0.156 4.156 28 H 0.031 0.969 29 H 0.091 0.909 30 H 0.077 0.923 31 H 0.137 0.863 32 H 0.068 0.932 33 H 0.091 0.909 34 H 0.026 0.974 35 H 0.043 0.957 36 H 0.088 0.912 37 H 0.105 0.895 38 H 0.424 0.576 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.258 0.742 42 H 0.121 0.879 43 H 0.145 0.855 44 H 0.146 0.854 45 H 0.131 0.869 46 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.613 6.942 -20.212 21.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.100 4.100 3 C -0.214 4.214 4 C 0.187 3.813 5 C -0.224 4.224 6 C -0.089 4.089 7 N -0.162 5.162 8 N -0.372 5.372 9 C 0.299 3.701 10 O -0.418 6.418 11 C -0.150 4.150 12 C 0.054 3.946 13 H 0.014 0.986 14 C -0.587 4.587 15 H 0.067 0.933 16 C -0.226 4.226 17 N -0.587 5.587 18 Si 0.919 3.081 19 H -0.223 1.223 20 H -0.208 1.208 21 H -0.188 1.188 22 C -0.055 4.055 23 C -0.136 4.136 24 C -0.141 4.141 25 C -0.162 4.162 26 C -0.145 4.145 27 C -0.174 4.174 28 H 0.050 0.950 29 H 0.110 0.890 30 H 0.096 0.904 31 H 0.155 0.845 32 H 0.087 0.913 33 H 0.110 0.890 34 H 0.045 0.955 35 H 0.062 0.938 36 H 0.107 0.893 37 H 0.124 0.876 38 H 0.264 0.736 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.069 0.931 42 H 0.139 0.861 43 H 0.163 0.837 44 H 0.164 0.836 45 H 0.149 0.851 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -2.992 6.266 -17.142 18.495 hybrid contribution 0.618 1.269 -0.279 1.439 sum -2.374 7.535 -17.421 19.129 Atomic orbital electron populations 1.21996 0.93040 1.03585 1.02513 1.21496 0.97603 0.96448 0.94480 1.21992 1.02039 0.95032 1.02334 1.18157 0.81856 0.94096 0.87218 1.22335 1.01985 0.93569 1.04546 1.30148 0.92310 0.92044 0.94408 1.81097 1.10005 1.13016 1.12094 1.46046 1.05113 1.61103 1.24909 1.21107 0.91058 0.76205 0.81692 1.90765 1.70388 1.46059 1.34604 1.21582 0.90254 1.01872 1.01326 1.17696 0.87931 0.95861 0.93083 0.98611 1.21785 1.45588 0.97227 0.94144 0.93328 1.26728 0.96298 1.06940 0.92605 1.70819 1.38826 1.20005 1.29097 0.83244 0.76433 0.72725 0.75648 1.22263 1.20791 1.18770 1.20627 0.97299 0.93683 0.93939 1.21032 0.94332 0.98964 0.99296 1.21433 0.93893 0.99357 0.99455 1.21304 1.00622 0.98951 0.95364 1.21273 0.93275 1.00408 0.99566 1.21107 0.95405 1.01775 0.99157 0.94972 0.89047 0.90425 0.84487 0.91342 0.88976 0.95451 0.93792 0.89289 0.87590 0.73626 0.89182 0.87255 0.93145 0.86143 0.83718 0.83643 0.85094 0.89334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 8.51 71.98 0.61 -1.30 16 2 C -0.08 -1.06 2.32 -10.79 -0.03 -1.09 16 3 C -0.16 -2.09 8.74 71.98 0.63 -1.46 16 4 C 0.28 6.57 0.51 1.80 0.00 6.57 16 5 C -0.17 -4.08 7.87 71.98 0.57 -3.51 16 6 C 0.23 7.72 10.22 89.44 0.91 8.63 16 7 N -0.49 -19.51 18.54 20.01 0.37 -19.14 16 8 N -0.71 -17.57 4.81 -431.20 -2.08 -19.65 16 9 C 0.51 19.09 7.00 87.66 0.61 19.71 16 10 O -0.54 -27.01 12.22 -3.04 -0.04 -27.05 16 11 C -0.11 -4.00 4.95 29.85 0.15 -3.85 16 12 C 0.07 3.56 1.23 -12.28 -0.02 3.55 16 13 H 0.00 -0.26 6.59 -2.39 -0.02 -0.27 16 14 C -0.55 -29.68 6.35 25.60 0.16 -29.52 16 15 H 0.05 2.53 7.82 -2.91 -0.02 2.51 16 16 C -0.03 -1.64 5.45 84.65 0.46 -1.18 16 17 N -0.95 -61.31 13.56 21.44 0.29 -61.02 16 18 Si 1.09 53.44 29.91 68.60 2.05 55.49 16 19 H -0.30 -14.91 7.11 99.48 0.71 -14.21 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.57 16 21 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 22 C -0.05 -2.41 4.53 -19.87 -0.09 -2.50 16 23 C -0.12 -4.49 8.90 22.27 0.20 -4.29 16 24 C -0.12 -3.90 10.05 22.27 0.22 -3.68 16 25 C -0.14 -4.43 10.05 22.27 0.22 -4.20 16 26 C -0.13 -4.47 10.05 22.27 0.22 -4.25 16 27 C -0.16 -6.69 9.18 22.27 0.20 -6.49 16 28 H 0.03 0.56 7.38 -2.38 -0.02 0.54 16 29 H 0.09 0.70 8.14 -2.39 -0.02 0.69 16 30 H 0.08 0.84 6.34 -2.39 -0.02 0.83 16 31 H 0.14 0.86 8.14 -2.38 -0.02 0.84 16 32 H 0.07 0.82 7.18 -2.39 -0.02 0.80 16 33 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.03 0.53 7.09 -2.39 -0.02 0.51 16 35 H 0.04 1.57 6.17 -2.38 -0.01 1.55 16 36 H 0.09 1.81 6.34 -2.39 -0.02 1.80 16 37 H 0.11 1.95 8.14 -2.38 -0.02 1.93 16 38 H 0.42 6.53 7.65 -92.71 -0.71 5.83 16 39 H 0.09 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.11 3.37 7.96 -2.39 -0.02 3.35 16 41 H 0.26 16.80 6.24 -92.71 -0.58 16.22 16 42 H 0.12 4.36 7.85 -2.91 -0.02 4.33 16 43 H 0.15 3.49 8.06 -2.91 -0.02 3.46 16 44 H 0.15 3.34 8.06 -2.91 -0.02 3.31 16 45 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 46 H 0.09 4.03 7.95 -2.91 -0.02 4.01 16 Total: -1.00 -84.29 373.72 6.12 -78.17 By element: Atomic # 1 Polarization: 21.59 SS G_CDS: 0.47 Total: 22.05 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 5.05 Total: -28.86 kcal Atomic # 7 Polarization: -98.39 SS G_CDS: -1.41 Total: -99.81 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.04 Total: -27.05 kcal Atomic # 14 Polarization: 53.44 SS G_CDS: 2.05 Total: 55.49 kcal Total: -84.29 6.12 -78.17 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000355463075.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.304 kcal (2) G-P(sol) polarization free energy of solvation -84.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.117 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds