Wall clock time and date at job start Tue Mar 31 2020 11:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47115 * 2 1 4 4 C 1.53002 * 109.47498 * 120.00047 * 2 1 3 5 5 N 1.46502 * 109.47450 * 174.80828 * 4 2 1 6 6 C 1.46497 * 119.99598 * 277.28314 * 5 4 2 7 7 C 1.50694 * 109.47405 * 270.27665 * 6 5 4 8 8 C 1.38371 * 119.84597 * 269.72865 * 7 6 5 9 9 C 1.37948 * 120.15254 * 179.76128 * 8 7 6 10 10 C 1.39634 * 119.84139 * 0.53167 * 9 8 7 11 11 C 1.43204 * 120.14711 * 179.69776 * 10 9 8 12 12 N 9.28644 * 111.96142 * 148.73412 * 2 1 3 13 13 C 1.39633 * 119.70123 * 359.72321 * 10 9 8 14 14 C 1.37947 * 119.84769 * 0.02562 * 13 10 9 15 15 C 1.34767 * 119.99897 * 97.55981 * 5 4 2 16 16 O 1.21285 * 120.00091 * 175.89003 * 15 5 4 17 17 C 1.50704 * 120.00330 * 355.88384 * 15 5 4 18 18 C 1.52995 * 109.47172 * 176.49918 * 17 15 5 19 19 C 1.50704 * 109.47172 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99786 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99950 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99928 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00122 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47129 * 89.99879 * 23 21 19 25 25 H 1.48505 * 109.46778 * 209.99572 * 23 21 19 26 26 H 1.48497 * 109.46944 * 329.99727 * 23 21 19 27 27 H 1.08996 * 109.47086 * 299.99687 * 1 2 3 28 28 H 1.09001 * 109.47134 * 59.99805 * 1 2 3 29 29 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47489 * 240.00125 * 2 1 3 31 31 H 1.09001 * 109.47192 * 294.46591 * 3 2 1 32 32 H 1.09000 * 109.46949 * 54.46898 * 3 2 1 33 33 H 1.08999 * 109.47107 * 174.47461 * 3 2 1 34 34 H 1.08999 * 109.46606 * 54.80373 * 4 2 1 35 35 H 1.08998 * 109.47037 * 294.80827 * 4 2 1 36 36 H 1.08999 * 109.47332 * 30.27904 * 6 5 4 37 37 H 1.09004 * 109.47232 * 150.27379 * 6 5 4 38 38 H 1.08003 * 119.92003 * 359.97438 * 8 7 6 39 39 H 1.07997 * 120.07979 * 180.25513 * 9 8 7 40 40 H 1.08004 * 120.07260 * 179.97438 * 13 10 9 41 41 H 1.07996 * 119.92416 * 180.02562 * 14 13 10 42 42 H 1.08994 * 109.46743 * 296.49953 * 17 15 5 43 43 H 1.08996 * 109.46526 * 56.49841 * 17 15 5 44 44 H 1.09000 * 109.47415 * 300.00105 * 18 17 15 45 45 H 1.09001 * 109.47582 * 60.00028 * 18 17 15 46 46 H 0.97003 * 120.00607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4997 -0.8304 1.1884 6 6 4.1219 -1.9132 0.4225 7 6 4.3155 -3.1125 1.3142 8 6 5.4927 -3.2579 2.0268 9 6 5.6746 -4.3507 2.8488 10 6 4.6719 -5.3169 2.9522 11 6 4.8565 -6.4572 3.7986 12 7 5.0029 -7.3618 4.4700 13 6 3.4886 -5.1665 2.2263 14 6 3.3179 -4.0661 1.4120 15 6 4.2700 0.0619 1.8415 16 8 5.4755 -0.0712 1.8531 17 6 3.6336 1.2254 2.5574 18 6 4.7134 2.0297 3.2838 19 6 4.0769 3.1928 4.0002 20 1 3.0090 3.3434 3.9428 21 6 4.8579 4.0646 4.7290 22 7 4.3025 5.0798 5.3538 23 14 6.7051 3.8044 4.8278 24 1 7.3676 4.5320 3.7156 25 1 7.2088 4.3200 6.1261 26 1 7.0072 2.3545 4.7201 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.7598 1.9270 -0.9354 32 1 1.5980 1.9841 0.8363 33 1 3.1254 1.4441 0.0989 34 1 1.6027 -1.7185 1.2969 35 1 1.7547 -0.1566 2.1368 36 1 3.4777 -2.1830 -0.4144 37 1 5.0890 -1.5817 0.0443 38 1 6.2695 -2.5123 1.9417 39 1 6.5922 -4.4609 3.4075 40 1 2.7093 -5.9104 2.3015 41 1 2.4030 -3.9484 0.8504 42 1 3.1290 1.8653 1.8336 43 1 2.9085 0.8537 3.2814 44 1 5.2181 1.3898 4.0076 45 1 5.4386 2.4014 2.5598 46 1 4.8520 5.6934 5.8662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000360244593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:11 Heat of formation + Delta-G solvation = 3.713681 kcal Electronic energy + Delta-G solvation = -25854.579803 eV Core-core repulsion = 22322.851261 eV Total energy + Delta-G solvation = -3531.728542 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.36691 -39.28641 -36.86238 -36.62376 -34.39465 -33.41329 -32.01293 -31.35069 -31.16950 -27.81208 -27.30920 -26.38886 -25.18297 -23.01792 -22.72572 -20.90118 -20.56318 -19.16287 -18.51520 -17.32453 -16.35498 -16.28980 -16.05017 -15.58385 -15.21910 -14.86388 -14.63672 -14.24111 -14.09089 -13.79142 -13.65329 -13.51369 -13.30721 -13.15441 -12.89888 -12.67882 -12.53236 -12.34145 -12.28853 -12.06822 -11.99104 -11.79669 -11.41292 -11.28037 -11.20121 -11.04566 -10.85642 -10.73855 -10.10973 -9.95722 -9.75884 -9.40429 -9.27930 -9.18808 -8.93983 -8.60806 -8.51210 -6.04048 -4.02660 0.46307 1.09376 2.41744 2.62143 3.02238 3.20716 3.36482 3.43450 3.53350 3.62659 3.69558 4.46873 4.49640 4.56084 4.60613 4.69344 4.78687 4.86246 4.99804 5.08637 5.23706 5.29637 5.31650 5.38571 5.43488 5.47074 5.59577 5.60705 5.67969 5.76467 5.80992 5.87120 5.92800 6.00458 6.03283 6.05769 6.10003 6.22512 6.31449 6.36656 6.55565 6.58584 6.71705 7.22635 7.34966 7.42081 7.54484 7.78293 8.46957 8.57668 8.98985 9.59235 11.08788 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010091 B = 0.003980 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.990648 B = 7033.469757 C = 9026.267768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.112 4.112 3 C -0.157 4.157 4 C 0.111 3.889 5 N -0.616 5.616 6 C 0.149 3.851 7 C -0.071 4.071 8 C -0.094 4.094 9 C -0.071 4.071 10 C -0.034 4.034 11 C 0.258 3.742 12 N -0.424 5.424 13 C -0.074 4.074 14 C -0.110 4.110 15 C 0.515 3.485 16 O -0.536 6.536 17 C -0.135 4.135 18 C 0.002 3.998 19 C -0.523 4.523 20 H 0.072 0.928 21 C 0.069 3.931 22 N -0.904 5.904 23 Si 0.876 3.124 24 H -0.277 1.277 25 H -0.289 1.289 26 H -0.261 1.261 27 H 0.060 0.940 28 H 0.056 0.944 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.093 0.907 38 H 0.142 0.858 39 H 0.132 0.868 40 H 0.131 0.869 41 H 0.131 0.869 42 H 0.100 0.900 43 H 0.082 0.918 44 H 0.021 0.979 45 H 0.019 0.981 46 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.431 -17.340 -13.881 23.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.131 4.131 3 C -0.214 4.214 4 C -0.012 4.012 5 N -0.350 5.350 6 C 0.026 3.974 7 C -0.073 4.073 8 C -0.113 4.113 9 C -0.091 4.091 10 C -0.037 4.037 11 C -0.057 4.057 12 N -0.099 5.099 13 C -0.095 4.095 14 C -0.129 4.129 15 C 0.306 3.694 16 O -0.412 6.412 17 C -0.175 4.175 18 C -0.035 4.035 19 C -0.561 4.561 20 H 0.090 0.910 21 C -0.132 4.132 22 N -0.542 5.542 23 Si 0.703 3.297 24 H -0.203 1.203 25 H -0.215 1.215 26 H -0.186 1.186 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.103 0.897 37 H 0.112 0.888 38 H 0.160 0.840 39 H 0.150 0.850 40 H 0.149 0.851 41 H 0.149 0.851 42 H 0.118 0.882 43 H 0.100 0.900 44 H 0.039 0.961 45 H 0.037 0.963 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -5.500 -18.636 -12.707 23.217 hybrid contribution 0.776 0.296 -0.055 0.832 sum -4.724 -18.340 -12.762 22.837 Atomic orbital electron populations 1.21788 0.94631 1.01580 1.02377 1.21521 0.95823 0.97320 0.98460 1.22110 1.01871 0.95291 1.02107 1.21750 0.79450 1.00969 0.99067 1.48130 1.06627 1.28114 1.52108 1.20338 1.00551 0.84455 0.92034 1.20616 0.93729 0.95620 0.97316 1.21268 0.98053 0.96973 0.94959 1.21236 0.97919 0.92641 0.97321 1.16028 0.97193 0.91537 0.98986 1.25782 0.93643 0.93023 0.93281 1.81248 1.07744 1.11038 1.09865 1.21102 0.95474 0.97972 0.94943 1.20974 0.98983 0.93676 0.99264 1.21558 0.87201 0.83128 0.77522 1.90621 1.14872 1.75402 1.60271 1.22063 1.01362 0.94044 1.00001 1.19365 0.93756 0.95005 0.95419 1.21095 0.95953 1.08847 1.30237 0.90982 1.24964 0.98603 0.94763 0.94861 1.69907 1.35925 1.15271 1.33133 0.86814 0.86034 0.79497 0.77310 1.20251 1.21494 1.18574 0.92134 0.92488 0.92809 0.91227 0.92871 0.91483 0.91918 0.90897 0.89201 0.89678 0.88832 0.83995 0.85008 0.85130 0.85076 0.88168 0.89963 0.96115 0.96293 0.92734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.19 37.15 0.34 -0.69 16 2 C -0.11 -0.93 3.11 -90.62 -0.28 -1.21 16 3 C -0.16 -1.69 7.54 37.16 0.28 -1.41 16 4 C 0.11 1.02 4.89 -4.04 -0.02 1.00 16 5 N -0.62 -7.18 2.21 -175.06 -0.39 -7.57 16 6 C 0.15 1.42 5.51 -5.20 -0.03 1.39 16 7 C -0.07 -0.66 5.47 -104.53 -0.57 -1.24 16 8 C -0.09 -1.00 9.58 -39.64 -0.38 -1.38 16 9 C -0.07 -0.69 9.76 -39.17 -0.38 -1.07 16 10 C -0.03 -0.32 5.73 -106.93 -0.61 -0.93 16 11 C 0.26 2.86 15.33 -22.47 -0.34 2.51 16 12 N -0.42 -5.62 18.54 41.84 0.78 -4.85 16 13 C -0.07 -0.58 9.76 -39.17 -0.38 -0.96 16 14 C -0.11 -0.82 9.68 -39.64 -0.38 -1.21 16 15 C 0.52 8.48 6.56 -10.99 -0.07 8.40 16 16 O -0.54 -10.51 14.88 5.55 0.08 -10.43 16 17 C -0.14 -2.48 4.06 -27.88 -0.11 -2.59 16 18 C 0.00 0.06 3.34 -27.88 -0.09 -0.03 16 19 C -0.52 -14.57 9.66 -34.44 -0.33 -14.90 16 20 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 21 C 0.07 2.02 5.47 -17.82 -0.10 1.92 16 22 N -0.90 -27.61 13.96 55.43 0.77 -26.83 16 23 Si 0.88 22.23 27.47 -169.99 -4.67 17.56 16 24 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 25 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 26 H -0.26 -6.58 6.54 56.52 0.37 -6.21 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 28 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.07 0.54 7.95 -51.93 -0.41 0.12 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.78 7.19 -51.93 -0.37 0.41 16 33 H 0.06 0.80 5.61 -51.93 -0.29 0.51 16 34 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.09 0.92 6.09 -51.93 -0.32 0.60 16 36 H 0.08 0.57 7.83 -51.93 -0.41 0.16 16 37 H 0.09 1.01 7.42 -51.93 -0.39 0.63 16 38 H 0.14 1.71 7.43 -52.48 -0.39 1.32 16 39 H 0.13 1.14 8.06 -52.49 -0.42 0.72 16 40 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.13 0.66 8.06 -52.49 -0.42 0.23 16 42 H 0.10 1.71 4.22 -51.93 -0.22 1.49 16 43 H 0.08 1.42 7.09 -51.93 -0.37 1.05 16 44 H 0.02 0.52 7.19 -51.93 -0.37 0.15 16 45 H 0.02 0.47 7.49 -51.93 -0.39 0.08 16 46 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 379.11 15.07 5.71 5.71 Total: -1.00 -33.49 379.11 -8.08 -41.57 By element: Atomic # 1 Polarization: 4.14 SS G_CDS: -6.89 Total: -2.75 kcal Atomic # 6 Polarization: -8.94 SS G_CDS: -3.47 Total: -12.41 kcal Atomic # 7 Polarization: -40.41 SS G_CDS: 1.16 Total: -39.25 kcal Atomic # 8 Polarization: -10.51 SS G_CDS: 0.08 Total: -10.43 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -4.67 Total: 17.56 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -33.49 -8.08 -41.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360244593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.279 kcal (2) G-P(sol) polarization free energy of solvation -33.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.791 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.565 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds