Wall clock time and date at job start Tue Mar 31 2020 11:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.47115 * 2 1 4 4 C 1.53002 * 109.47498 * 120.00047 * 2 1 3 5 5 N 1.46502 * 109.47450 * 174.80828 * 4 2 1 6 6 C 1.46497 * 119.99598 * 277.28314 * 5 4 2 7 7 C 1.50694 * 109.47405 * 270.27665 * 6 5 4 8 8 C 1.38371 * 119.84597 * 269.72865 * 7 6 5 9 9 C 1.37948 * 120.15254 * 179.76128 * 8 7 6 10 10 C 1.39634 * 119.84139 * 0.53167 * 9 8 7 11 11 C 1.43204 * 120.14711 * 179.69776 * 10 9 8 12 12 N 9.28644 * 111.96142 * 148.73412 * 2 1 3 13 13 C 1.39633 * 119.70123 * 359.72321 * 10 9 8 14 14 C 1.37947 * 119.84769 * 0.02562 * 13 10 9 15 15 C 1.34767 * 119.99897 * 97.55981 * 5 4 2 16 16 O 1.21285 * 120.00091 * 175.89003 * 15 5 4 17 17 C 1.50704 * 120.00330 * 355.88384 * 15 5 4 18 18 C 1.52995 * 109.47172 * 176.49918 * 17 15 5 19 19 C 1.50704 * 109.47172 * 180.02562 * 18 17 15 20 20 H 1.07999 * 119.99786 * 359.97438 * 19 18 17 21 21 C 1.37874 * 119.99950 * 179.97438 * 19 18 17 22 22 N 1.31511 * 119.99928 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00122 * 0.02562 * 21 19 18 24 24 H 1.48501 * 109.47129 * 89.99879 * 23 21 19 25 25 H 1.48505 * 109.46778 * 209.99572 * 23 21 19 26 26 H 1.48497 * 109.46944 * 329.99727 * 23 21 19 27 27 H 1.08996 * 109.47086 * 299.99687 * 1 2 3 28 28 H 1.09001 * 109.47134 * 59.99805 * 1 2 3 29 29 H 1.09000 * 109.46848 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47489 * 240.00125 * 2 1 3 31 31 H 1.09001 * 109.47192 * 294.46591 * 3 2 1 32 32 H 1.09000 * 109.46949 * 54.46898 * 3 2 1 33 33 H 1.08999 * 109.47107 * 174.47461 * 3 2 1 34 34 H 1.08999 * 109.46606 * 54.80373 * 4 2 1 35 35 H 1.08998 * 109.47037 * 294.80827 * 4 2 1 36 36 H 1.08999 * 109.47332 * 30.27904 * 6 5 4 37 37 H 1.09004 * 109.47232 * 150.27379 * 6 5 4 38 38 H 1.08003 * 119.92003 * 359.97438 * 8 7 6 39 39 H 1.07997 * 120.07979 * 180.25513 * 9 8 7 40 40 H 1.08004 * 120.07260 * 179.97438 * 13 10 9 41 41 H 1.07996 * 119.92416 * 180.02562 * 14 13 10 42 42 H 1.08994 * 109.46743 * 296.49953 * 17 15 5 43 43 H 1.08996 * 109.46526 * 56.49841 * 17 15 5 44 44 H 1.09000 * 109.47415 * 300.00105 * 18 17 15 45 45 H 1.09001 * 109.47582 * 60.00028 * 18 17 15 46 46 H 0.97003 * 120.00607 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.4997 -0.8304 1.1884 6 6 4.1219 -1.9132 0.4225 7 6 4.3155 -3.1125 1.3142 8 6 5.4927 -3.2579 2.0268 9 6 5.6746 -4.3507 2.8488 10 6 4.6719 -5.3169 2.9522 11 6 4.8565 -6.4572 3.7986 12 7 5.0029 -7.3618 4.4700 13 6 3.4886 -5.1665 2.2263 14 6 3.3179 -4.0661 1.4120 15 6 4.2700 0.0619 1.8415 16 8 5.4755 -0.0712 1.8531 17 6 3.6336 1.2254 2.5574 18 6 4.7134 2.0297 3.2838 19 6 4.0769 3.1928 4.0002 20 1 3.0090 3.3434 3.9428 21 6 4.8579 4.0646 4.7290 22 7 4.3025 5.0798 5.3538 23 14 6.7051 3.8044 4.8278 24 1 7.3676 4.5320 3.7156 25 1 7.2088 4.3200 6.1261 26 1 7.0072 2.3545 4.7201 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.7598 1.9270 -0.9354 32 1 1.5980 1.9841 0.8363 33 1 3.1254 1.4441 0.0989 34 1 1.6027 -1.7185 1.2969 35 1 1.7547 -0.1566 2.1368 36 1 3.4777 -2.1830 -0.4144 37 1 5.0890 -1.5817 0.0443 38 1 6.2695 -2.5123 1.9417 39 1 6.5922 -4.4609 3.4075 40 1 2.7093 -5.9104 2.3015 41 1 2.4030 -3.9484 0.8504 42 1 3.1290 1.8653 1.8336 43 1 2.9085 0.8537 3.2814 44 1 5.2181 1.3898 4.0076 45 1 5.4386 2.4014 2.5598 46 1 4.8520 5.6934 5.8662 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000360244593.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:10 Heat of formation + Delta-G solvation = -14.273620 kcal Electronic energy + Delta-G solvation = -25855.359791 eV Core-core repulsion = 22322.851261 eV Total energy + Delta-G solvation = -3532.508530 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.34750 -40.16798 -37.86474 -37.51515 -35.69577 -34.96290 -33.38282 -32.56296 -32.01969 -29.01488 -28.12420 -27.44193 -26.40206 -23.82403 -23.67219 -22.48551 -21.39192 -19.90282 -19.67706 -19.09014 -17.75313 -17.23686 -17.08265 -16.42172 -16.19791 -16.17236 -15.62094 -15.37909 -15.11623 -14.89101 -14.73295 -14.52059 -14.42955 -14.31296 -14.02551 -13.89765 -13.70100 -13.43843 -13.16965 -13.01759 -12.88692 -12.82503 -12.63653 -12.56213 -12.12289 -12.01089 -11.91902 -11.85327 -11.76500 -11.53271 -11.47349 -11.25497 -10.76383 -10.64870 -9.94330 -9.80375 -9.55437 -8.30286 -6.32468 -0.27792 0.43018 1.32847 1.35081 1.49487 1.55486 1.73429 1.80353 2.26693 2.35370 2.82849 2.94752 3.05708 3.72746 3.83777 3.93975 3.98682 3.99512 4.13559 4.32567 4.32573 4.42017 4.44579 4.49943 4.62139 4.66411 4.74042 4.79701 4.85353 4.91958 5.01030 5.03049 5.08929 5.15193 5.20765 5.26072 5.33884 5.35332 5.38787 5.46912 5.51896 5.59628 5.61557 5.63689 5.72929 5.88677 6.25526 6.38273 6.45653 6.73956 7.32657 7.32888 8.85398 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.010091 B = 0.003980 C = 0.003101 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2773.990648 B = 7033.469757 C = 9026.267768 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.102 4.102 3 C -0.160 4.160 4 C 0.103 3.897 5 N -0.601 5.601 6 C 0.148 3.852 7 C -0.075 4.075 8 C -0.114 4.114 9 C -0.077 4.077 10 C -0.043 4.043 11 C 0.280 3.720 12 N -0.468 5.468 13 C -0.063 4.063 14 C -0.097 4.097 15 C 0.517 3.483 16 O -0.576 6.576 17 C -0.130 4.130 18 C 0.008 3.992 19 C -0.525 4.525 20 H 0.049 0.951 21 C 0.014 3.986 22 N -0.944 5.944 23 Si 0.935 3.065 24 H -0.268 1.268 25 H -0.280 1.280 26 H -0.261 1.261 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.076 0.924 30 H 0.087 0.913 31 H 0.060 0.940 32 H 0.051 0.949 33 H 0.038 0.962 34 H 0.111 0.889 35 H 0.077 0.923 36 H 0.128 0.872 37 H 0.075 0.925 38 H 0.118 0.882 39 H 0.132 0.868 40 H 0.158 0.842 41 H 0.171 0.829 42 H 0.111 0.889 43 H 0.091 0.909 44 H 0.005 0.995 45 H 0.007 0.993 46 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.197 -19.483 -15.856 26.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.122 4.122 3 C -0.217 4.217 4 C -0.019 4.019 5 N -0.332 5.332 6 C 0.026 3.974 7 C -0.077 4.077 8 C -0.133 4.133 9 C -0.098 4.098 10 C -0.047 4.047 11 C -0.035 4.035 12 N -0.144 5.144 13 C -0.084 4.084 14 C -0.115 4.115 15 C 0.307 3.693 16 O -0.455 6.455 17 C -0.169 4.169 18 C -0.030 4.030 19 C -0.563 4.563 20 H 0.068 0.932 21 C -0.183 4.183 22 N -0.584 5.584 23 Si 0.760 3.240 24 H -0.194 1.194 25 H -0.206 1.206 26 H -0.186 1.186 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.057 0.943 34 H 0.129 0.871 35 H 0.095 0.905 36 H 0.146 0.854 37 H 0.093 0.907 38 H 0.136 0.864 39 H 0.150 0.850 40 H 0.176 0.824 41 H 0.189 0.811 42 H 0.128 0.872 43 H 0.109 0.891 44 H 0.024 0.976 45 H 0.026 0.974 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.305 -20.805 -14.708 26.505 hybrid contribution 1.221 0.988 0.502 1.649 sum -6.084 -19.817 -14.206 25.130 Atomic orbital electron populations 1.21761 0.93211 1.02984 1.02082 1.21466 0.96813 0.95260 0.98619 1.22108 1.00199 0.97493 1.01884 1.22042 0.77599 1.03144 0.99072 1.48004 1.07508 1.27213 1.50480 1.20555 1.00664 0.83454 0.92736 1.20663 0.93790 0.96172 0.97070 1.21177 0.98656 0.96996 0.96426 1.21237 0.98384 0.92735 0.97433 1.16111 0.98119 0.90884 0.99562 1.25988 0.92371 0.92625 0.92478 1.81268 1.09171 1.12543 1.11373 1.21450 0.94969 0.98432 0.93520 1.21315 0.99414 0.92217 0.98545 1.21047 0.86753 0.83495 0.78023 1.90613 1.16416 1.76415 1.62096 1.21878 0.99735 0.94932 1.00387 1.19198 0.94873 0.94077 0.94863 1.21421 0.95137 1.09804 1.29926 0.93239 1.25773 1.03011 0.94682 0.94846 1.70020 1.37624 1.16406 1.34391 0.85874 0.80958 0.79352 0.77811 1.19357 1.20554 1.18568 0.93080 0.92258 0.90520 0.89432 0.92077 0.93030 0.94311 0.87060 0.90487 0.85368 0.90657 0.86387 0.85023 0.82426 0.81143 0.87165 0.89052 0.97618 0.97445 0.92460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 71.98 0.66 -0.80 16 2 C -0.10 -1.35 3.11 -10.79 -0.03 -1.38 16 3 C -0.16 -3.24 7.54 71.98 0.54 -2.70 16 4 C 0.10 1.52 4.89 86.38 0.42 1.94 16 5 N -0.60 -12.59 2.21 -826.17 -1.83 -14.42 16 6 C 0.15 2.35 5.51 85.63 0.47 2.83 16 7 C -0.07 -1.19 5.47 -19.81 -0.11 -1.30 16 8 C -0.11 -2.38 9.58 22.23 0.21 -2.16 16 9 C -0.08 -1.47 9.76 22.54 0.22 -1.25 16 10 C -0.04 -0.73 5.73 -21.36 -0.12 -0.85 16 11 C 0.28 5.88 15.33 88.33 1.35 7.23 16 12 N -0.47 -12.16 18.54 19.00 0.35 -11.81 16 13 C -0.06 -0.72 9.76 22.54 0.22 -0.50 16 14 C -0.10 -0.96 9.68 22.23 0.22 -0.74 16 15 C 0.52 16.84 6.56 87.66 0.58 17.41 16 16 O -0.58 -23.03 14.88 -3.04 -0.05 -23.07 16 17 C -0.13 -4.81 4.06 29.85 0.12 -4.68 16 18 C 0.01 0.39 3.34 29.85 0.10 0.49 16 19 C -0.52 -30.01 9.66 25.60 0.25 -29.76 16 20 H 0.05 2.98 7.99 -2.91 -0.02 2.95 16 21 C 0.01 0.86 5.47 84.65 0.46 1.32 16 22 N -0.94 -58.87 13.96 21.45 0.30 -58.57 16 23 Si 0.94 46.64 27.47 68.60 1.88 48.52 16 24 H -0.27 -12.94 7.11 99.48 0.71 -12.23 16 25 H -0.28 -13.46 7.11 99.48 0.71 -12.76 16 26 H -0.26 -12.93 6.54 99.48 0.65 -12.28 16 27 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.09 0.91 7.95 -2.39 -0.02 0.89 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.10 16 32 H 0.05 1.19 7.19 -2.39 -0.02 1.17 16 33 H 0.04 0.97 5.61 -2.39 -0.01 0.95 16 34 H 0.11 0.87 8.12 -2.39 -0.02 0.85 16 35 H 0.08 1.38 6.09 -2.39 -0.01 1.37 16 36 H 0.13 0.98 7.83 -2.39 -0.02 0.96 16 37 H 0.07 1.54 7.42 -2.38 -0.02 1.52 16 38 H 0.12 3.02 7.43 -2.91 -0.02 3.00 16 39 H 0.13 2.37 8.06 -2.91 -0.02 2.34 16 40 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 41 H 0.17 0.41 8.06 -2.91 -0.02 0.38 16 42 H 0.11 3.82 4.22 -2.39 -0.01 3.81 16 43 H 0.09 3.16 7.09 -2.39 -0.02 3.14 16 44 H 0.01 0.28 7.19 -2.39 -0.02 0.27 16 45 H 0.01 0.37 7.49 -2.39 -0.02 0.35 16 46 H 0.27 15.57 8.31 -92.71 -0.77 14.80 16 Total: -1.00 -76.22 379.11 7.14 -69.08 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: 0.92 Total: 5.21 kcal Atomic # 6 Polarization: -20.50 SS G_CDS: 5.56 Total: -14.93 kcal Atomic # 7 Polarization: -83.62 SS G_CDS: -1.18 Total: -84.80 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: -0.05 Total: -23.07 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 1.88 Total: 48.52 kcal Total: -76.22 7.14 -69.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000360244593.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.803 kcal (2) G-P(sol) polarization free energy of solvation -76.221 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.144 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.077 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds