Wall clock time and date at job start Tue Mar 31 2020 10:27:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46814 * 2 1 4 4 C 1.52997 * 109.46865 * 240.00708 * 2 1 3 5 5 C 1.50691 * 109.47686 * 120.00287 * 2 1 3 6 6 C 1.38242 * 120.00016 * 59.99849 * 5 2 1 7 7 C 1.38233 * 120.00207 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99726 * 359.95777 * 7 6 5 9 9 C 1.50707 * 119.99928 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.46418 * 340.00004 * 9 8 7 11 11 C 1.47200 * 109.46985 * 99.99536 * 9 8 7 12 12 N 7.08841 * 128.31780 * 128.72436 * 2 1 3 13 13 N 1.46497 * 109.46997 * 219.99745 * 9 8 7 14 14 C 1.34777 * 119.99525 * 154.99586 * 13 9 8 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 9 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 9 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99720 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00078 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99876 * 22 20 18 24 24 H 1.48492 * 109.47096 * 210.00138 * 22 20 18 25 25 H 1.48506 * 109.46749 * 330.00135 * 22 20 18 26 26 C 1.38229 * 120.00201 * 0.27410 * 8 7 6 27 27 C 1.38230 * 120.00280 * 239.98184 * 5 2 1 28 28 H 1.09006 * 109.46709 * 299.99097 * 1 2 3 29 29 H 1.08998 * 109.47266 * 59.99572 * 1 2 3 30 30 H 1.08995 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46964 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46883 * 300.00581 * 3 2 1 33 33 H 1.08997 * 109.46855 * 60.00703 * 3 2 1 34 34 H 1.08996 * 109.47351 * 299.99539 * 4 2 1 35 35 H 1.08998 * 109.47406 * 59.99806 * 4 2 1 36 36 H 1.08999 * 109.47231 * 179.97438 * 4 2 1 37 37 H 1.07998 * 119.99585 * 359.97438 * 6 5 2 38 38 H 1.07997 * 119.99645 * 179.97438 * 7 6 5 39 39 H 0.97000 * 120.00580 * 335.00332 * 13 9 8 40 40 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 41 41 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 42 42 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 43 43 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 44 44 H 0.97008 * 119.99515 * 180.02562 * 21 20 18 45 45 H 1.08009 * 120.00095 * 179.72930 * 26 8 7 46 46 H 1.07997 * 120.00266 * 359.97438 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0325 -0.7104 1.2303 6 6 1.6986 -2.0339 1.4491 7 6 2.1590 -2.6855 2.5779 8 6 2.9541 -2.0138 3.4876 9 6 3.4566 -2.7243 4.7180 10 1 2.8353 -3.5987 4.9118 11 6 4.8495 -3.1497 4.5045 12 7 5.9250 -3.4791 4.3388 13 7 3.3938 -1.8163 5.8660 14 6 3.2969 -2.3146 7.1146 15 8 3.2622 -3.5145 7.2878 16 6 3.2385 -1.3807 8.2960 17 6 3.1383 -2.1966 9.5865 18 6 3.0792 -1.2627 10.7678 19 1 3.1105 -0.1943 10.6136 20 6 2.9853 -1.7725 12.0454 21 7 2.9477 -3.0736 12.2332 22 14 2.9128 -0.6150 13.5099 23 1 1.4968 -0.2801 13.8064 24 1 3.5238 -1.2738 14.6921 25 1 3.6602 0.6290 13.1949 26 6 3.2840 -0.6890 3.2713 27 6 2.8276 -0.0388 2.1400 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7487 -1.2494 35 1 1.6766 -0.2072 -2.1392 36 1 3.1300 -0.7207 -1.2496 37 1 1.0773 -2.5586 0.7384 38 1 1.8978 -3.7193 2.7489 39 1 3.4217 -0.8567 5.7276 40 1 4.1410 -0.7700 8.3214 41 1 2.3652 -0.7348 8.2058 42 1 2.2358 -2.8073 9.5610 43 1 4.0116 -2.8425 9.6767 44 1 2.8812 -3.4322 13.1321 45 1 3.9017 -0.1629 3.9843 46 1 3.0890 0.9950 1.9689 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362123389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:49 Heat of formation + Delta-G solvation = -7.332458 kcal Electronic energy + Delta-G solvation = -24819.055795 eV Core-core repulsion = 21286.848256 eV Total energy + Delta-G solvation = -3532.207539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.60266 -39.41452 -37.45185 -36.18671 -34.45676 -33.49854 -31.58628 -31.36572 -30.50211 -27.81547 -27.65042 -27.34879 -25.39867 -22.91635 -22.68565 -21.69218 -19.86733 -19.60292 -18.25348 -17.51594 -16.81963 -16.16275 -15.77435 -15.29822 -15.14116 -14.73239 -14.68384 -14.43714 -14.27527 -13.97328 -13.71546 -13.55542 -13.36211 -13.09214 -12.98213 -12.56175 -12.40270 -12.38614 -12.18948 -12.14185 -12.08144 -11.87354 -11.59698 -11.35532 -11.20603 -10.99870 -10.94410 -10.87276 -10.61542 -10.00222 -9.74234 -9.37477 -9.29457 -9.22104 -9.11629 -8.92908 -8.33773 -5.97643 -4.02240 0.88246 1.09327 2.45295 2.70559 3.00443 3.32703 3.37102 3.38864 3.41141 3.48471 4.05079 4.15667 4.29967 4.43723 4.46439 4.58079 4.64315 4.68638 4.85820 5.02982 5.10179 5.15954 5.21341 5.29531 5.35288 5.37532 5.46202 5.47133 5.51671 5.55133 5.61936 5.70214 5.72309 5.82781 5.89079 6.10396 6.13002 6.15752 6.16461 6.29948 6.38986 6.62588 6.81728 7.47622 7.60850 7.72198 7.82370 8.04337 8.34317 8.56317 9.05791 9.61505 11.13232 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.002364 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.030881 B =11843.662275 C =12593.294583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.032 4.032 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.113 4.113 7 C -0.092 4.092 8 C -0.100 4.100 9 C 0.288 3.712 10 H 0.136 0.864 11 C 0.200 3.800 12 N -0.417 5.417 13 N -0.733 5.733 14 C 0.513 3.487 15 O -0.523 6.523 16 C -0.128 4.128 17 C 0.036 3.964 18 C -0.528 4.528 19 H 0.056 0.944 20 C 0.058 3.942 21 N -0.889 5.889 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.287 1.287 25 H -0.274 1.274 26 C -0.099 4.099 27 C -0.118 4.118 28 H 0.058 0.942 29 H 0.058 0.942 30 H 0.058 0.942 31 H 0.059 0.941 32 H 0.058 0.942 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.058 0.942 36 H 0.056 0.944 37 H 0.125 0.875 38 H 0.130 0.870 39 H 0.405 0.595 40 H 0.082 0.918 41 H 0.085 0.915 42 H 0.025 0.975 43 H 0.024 0.976 44 H 0.261 0.739 45 H 0.125 0.875 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.280 8.461 -28.889 30.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.032 4.032 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.062 4.062 6 C -0.131 4.131 7 C -0.111 4.111 8 C -0.101 4.101 9 C 0.178 3.822 10 H 0.153 0.847 11 C -0.120 4.120 12 N -0.093 5.093 13 N -0.389 5.389 14 C 0.302 3.698 15 O -0.396 6.396 16 C -0.168 4.168 17 C -0.002 4.002 18 C -0.566 4.566 19 H 0.075 0.925 20 C -0.144 4.144 21 N -0.528 5.528 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 C -0.118 4.118 27 C -0.135 4.135 28 H 0.077 0.923 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.078 0.922 32 H 0.077 0.923 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.143 0.857 38 H 0.148 0.852 39 H 0.242 0.758 40 H 0.101 0.899 41 H 0.103 0.897 42 H 0.044 0.956 43 H 0.042 0.958 44 H 0.071 0.929 45 H 0.143 0.857 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -3.701 6.933 -28.810 29.863 hybrid contribution -0.354 1.106 0.905 1.472 sum -4.055 8.039 -27.905 29.322 Atomic orbital electron populations 1.21898 0.93431 1.02226 1.02078 1.19538 0.95890 0.95127 0.92610 1.21981 1.01259 0.94884 1.02159 1.21897 1.01322 1.00259 0.96162 1.19904 0.96672 0.94019 0.95602 1.20949 1.00410 0.94296 0.97467 1.21007 0.96336 1.00115 0.93603 1.19477 1.00340 0.94779 0.95528 1.16837 0.84793 0.95241 0.85281 0.84663 1.29638 0.95228 0.93709 0.93447 1.81180 1.11983 1.08311 1.07872 1.46386 1.77901 1.09702 1.04949 1.21822 0.73702 0.90597 0.83656 1.90705 1.47450 1.16351 1.85111 1.21905 1.02868 0.98485 0.93552 1.18925 0.98689 0.94652 0.87890 1.21197 1.51253 0.92931 0.91220 0.92539 1.25027 0.95293 0.95018 0.99060 1.69997 1.49874 1.11085 1.21794 0.86585 0.78145 0.80878 0.82299 1.20641 1.21240 1.19890 1.20976 0.99280 0.93887 0.97631 1.21151 0.98088 1.00406 0.93894 0.92261 0.92302 0.92314 0.92197 0.92307 0.92038 0.92330 0.92280 0.92441 0.85685 0.85174 0.75846 0.89931 0.89699 0.95641 0.95790 0.92919 0.85677 0.85180 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 8.29 37.16 0.31 -0.43 16 2 C -0.03 -0.18 0.85 -155.66 -0.13 -0.31 16 3 C -0.15 -0.74 7.13 37.16 0.27 -0.47 16 4 C -0.14 -0.74 8.29 37.16 0.31 -0.43 16 5 C -0.06 -0.45 4.76 -104.63 -0.50 -0.95 16 6 C -0.11 -0.84 8.71 -39.58 -0.34 -1.18 16 7 C -0.09 -0.76 9.67 -39.58 -0.38 -1.14 16 8 C -0.10 -0.93 4.92 -104.62 -0.51 -1.45 16 9 C 0.29 3.39 2.62 -71.87 -0.19 3.21 16 10 H 0.14 1.60 7.44 -51.93 -0.39 1.22 16 11 C 0.20 2.91 14.90 -20.73 -0.31 2.60 16 12 N -0.42 -7.05 18.54 42.19 0.78 -6.26 16 13 N -0.73 -9.32 4.99 -57.69 -0.29 -9.60 16 14 C 0.51 9.17 7.77 -10.98 -0.09 9.08 16 15 O -0.52 -11.57 15.65 5.55 0.09 -11.49 16 16 C -0.13 -2.45 5.64 -27.88 -0.16 -2.61 16 17 C 0.04 0.94 4.26 -27.88 -0.12 0.82 16 18 C -0.53 -14.70 9.11 -34.44 -0.31 -15.02 16 19 H 0.06 1.48 7.74 -52.49 -0.41 1.07 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -27.20 13.29 55.43 0.74 -26.47 16 22 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 25 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 26 C -0.10 -0.83 9.05 -39.58 -0.36 -1.19 16 27 C -0.12 -0.89 8.98 -39.58 -0.36 -1.24 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.06 0.30 7.39 -51.93 -0.38 -0.08 16 31 H 0.06 0.31 7.51 -51.93 -0.39 -0.09 16 32 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 33 H 0.06 0.31 7.51 -51.93 -0.39 -0.08 16 34 H 0.06 0.30 7.39 -51.93 -0.38 -0.08 16 35 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 36 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.13 0.72 7.10 -52.49 -0.37 0.35 16 38 H 0.13 0.88 8.04 -52.49 -0.42 0.46 16 39 H 0.40 3.90 6.86 -40.82 -0.28 3.62 16 40 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 41 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 42 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 43 H 0.02 0.69 8.10 -51.93 -0.42 0.27 16 44 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 45 H 0.13 0.90 6.90 -52.48 -0.36 0.54 16 46 H 0.13 0.78 5.90 -52.49 -0.31 0.47 16 LS Contribution 385.02 15.07 5.80 5.80 Total: -1.00 -34.96 385.02 -7.90 -42.86 By element: Atomic # 1 Polarization: 4.86 SS G_CDS: -7.02 Total: -2.16 kcal Atomic # 6 Polarization: -6.18 SS G_CDS: -2.98 Total: -9.15 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 1.23 Total: -42.33 kcal Atomic # 8 Polarization: -11.57 SS G_CDS: 0.09 Total: -11.49 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.96 -7.90 -42.86 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362123389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.530 kcal (2) G-P(sol) polarization free energy of solvation -34.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.898 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.862 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds