Wall clock time and date at job start Tue Mar 31 2020 10:27:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53008 * 109.46814 * 2 1 4 4 C 1.52997 * 109.46865 * 240.00708 * 2 1 3 5 5 C 1.50691 * 109.47686 * 120.00287 * 2 1 3 6 6 C 1.38242 * 120.00016 * 59.99849 * 5 2 1 7 7 C 1.38233 * 120.00207 * 180.02562 * 6 5 2 8 8 C 1.38234 * 119.99726 * 359.95777 * 7 6 5 9 9 C 1.50707 * 119.99928 * 180.02562 * 8 7 6 10 10 H 1.09007 * 109.46418 * 340.00004 * 9 8 7 11 11 C 1.47200 * 109.46985 * 99.99536 * 9 8 7 12 12 N 7.08841 * 128.31780 * 128.72436 * 2 1 3 13 13 N 1.46497 * 109.46997 * 219.99745 * 9 8 7 14 14 C 1.34777 * 119.99525 * 154.99586 * 13 9 8 15 15 O 1.21283 * 120.00463 * 0.02562 * 14 13 9 16 16 C 1.50700 * 119.99675 * 179.72583 * 14 13 9 17 17 C 1.53004 * 109.47208 * 180.27843 * 16 14 13 18 18 C 1.50700 * 109.47208 * 180.02562 * 17 16 14 19 19 H 1.08002 * 119.99770 * 359.97438 * 18 17 16 20 20 C 1.37876 * 119.99720 * 179.97438 * 18 17 16 21 21 N 1.31514 * 120.00078 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99915 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46986 * 89.99876 * 22 20 18 24 24 H 1.48492 * 109.47096 * 210.00138 * 22 20 18 25 25 H 1.48506 * 109.46749 * 330.00135 * 22 20 18 26 26 C 1.38229 * 120.00201 * 0.27410 * 8 7 6 27 27 C 1.38230 * 120.00280 * 239.98184 * 5 2 1 28 28 H 1.09006 * 109.46709 * 299.99097 * 1 2 3 29 29 H 1.08998 * 109.47266 * 59.99572 * 1 2 3 30 30 H 1.08995 * 109.46818 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46964 * 180.02562 * 3 2 1 32 32 H 1.08997 * 109.46883 * 300.00581 * 3 2 1 33 33 H 1.08997 * 109.46855 * 60.00703 * 3 2 1 34 34 H 1.08996 * 109.47351 * 299.99539 * 4 2 1 35 35 H 1.08998 * 109.47406 * 59.99806 * 4 2 1 36 36 H 1.08999 * 109.47231 * 179.97438 * 4 2 1 37 37 H 1.07998 * 119.99585 * 359.97438 * 6 5 2 38 38 H 1.07997 * 119.99645 * 179.97438 * 7 6 5 39 39 H 0.97000 * 120.00580 * 335.00332 * 13 9 8 40 40 H 1.09009 * 109.47352 * 300.27556 * 16 14 13 41 41 H 1.08998 * 109.47585 * 60.27844 * 16 14 13 42 42 H 1.09000 * 109.46887 * 300.00372 * 17 16 14 43 43 H 1.08998 * 109.46846 * 59.99549 * 17 16 14 44 44 H 0.97008 * 119.99515 * 180.02562 * 21 20 18 45 45 H 1.08009 * 120.00095 * 179.72930 * 26 8 7 46 46 H 1.07997 * 120.00266 * 359.97438 * 27 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2493 5 6 2.0325 -0.7104 1.2303 6 6 1.6986 -2.0339 1.4491 7 6 2.1590 -2.6855 2.5779 8 6 2.9541 -2.0138 3.4876 9 6 3.4566 -2.7243 4.7180 10 1 2.8353 -3.5987 4.9118 11 6 4.8495 -3.1497 4.5045 12 7 5.9250 -3.4791 4.3388 13 7 3.3938 -1.8163 5.8660 14 6 3.2969 -2.3146 7.1146 15 8 3.2622 -3.5145 7.2878 16 6 3.2385 -1.3807 8.2960 17 6 3.1383 -2.1966 9.5865 18 6 3.0792 -1.2627 10.7678 19 1 3.1105 -0.1943 10.6136 20 6 2.9853 -1.7725 12.0454 21 7 2.9477 -3.0736 12.2332 22 14 2.9128 -0.6150 13.5099 23 1 1.4968 -0.2801 13.8064 24 1 3.5238 -1.2738 14.6921 25 1 3.6602 0.6290 13.1949 26 6 3.2840 -0.6890 3.2713 27 6 2.8276 -0.0388 2.1400 28 1 -0.3633 0.5137 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 3.1300 1.4426 -0.0005 32 1 1.6765 1.9564 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 1.6767 -1.7487 -1.2494 35 1 1.6766 -0.2072 -2.1392 36 1 3.1300 -0.7207 -1.2496 37 1 1.0773 -2.5586 0.7384 38 1 1.8978 -3.7193 2.7489 39 1 3.4217 -0.8567 5.7276 40 1 4.1410 -0.7700 8.3214 41 1 2.3652 -0.7348 8.2058 42 1 2.2358 -2.8073 9.5610 43 1 4.0116 -2.8425 9.6767 44 1 2.8812 -3.4322 13.1321 45 1 3.9017 -0.1629 3.9843 46 1 3.0890 0.9950 1.9689 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362123389.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:27:47 Heat of formation + Delta-G solvation = -27.882217 kcal Electronic energy + Delta-G solvation = -24819.946900 eV Core-core repulsion = 21286.848256 eV Total energy + Delta-G solvation = -3533.098643 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 2.10 seconds Orbital eigenvalues (eV) -41.44948 -40.52189 -38.42015 -37.12772 -35.66732 -35.47233 -33.13558 -32.11282 -31.62571 -28.53682 -28.19903 -28.04294 -27.10916 -23.92742 -23.43298 -23.10135 -21.29004 -20.10867 -19.35190 -18.92319 -18.13719 -17.56336 -16.78633 -16.46084 -16.30481 -16.02652 -15.68915 -15.22772 -15.09800 -14.93710 -14.57835 -14.48431 -14.28511 -14.23031 -14.18704 -13.91961 -13.62361 -13.38749 -13.22611 -12.89132 -12.86324 -12.79773 -12.57033 -12.48086 -12.45240 -12.22470 -11.89150 -11.78234 -11.63299 -11.51948 -11.33852 -11.29073 -10.88530 -10.60311 -10.50652 -9.82290 -9.59772 -8.16195 -6.29562 0.22334 0.50088 1.25512 1.43944 1.46233 1.54115 1.56943 1.62834 2.27670 2.45853 2.63411 3.08096 3.17325 3.47876 3.75371 3.78459 3.94775 4.07091 4.14172 4.17218 4.34078 4.42251 4.51436 4.55928 4.59116 4.66640 4.84021 4.85691 4.96167 4.96661 5.02857 5.07476 5.09712 5.14732 5.15523 5.19879 5.28815 5.41095 5.49324 5.52872 5.55529 5.57356 5.66344 5.75841 5.88010 6.03812 6.19552 6.30923 6.42666 6.89059 7.19176 7.40607 8.96303 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.019811 B = 0.002364 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.030881 B =11843.662275 C =12593.294583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.031 4.031 3 C -0.146 4.146 4 C -0.139 4.139 5 C -0.062 4.062 6 C -0.118 4.118 7 C -0.098 4.098 8 C -0.112 4.112 9 C 0.293 3.707 10 H 0.136 0.864 11 C 0.217 3.783 12 N -0.461 5.461 13 N -0.707 5.707 14 C 0.519 3.481 15 O -0.574 6.574 16 C -0.119 4.119 17 C 0.040 3.960 18 C -0.540 4.540 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.938 5.938 22 Si 0.972 3.028 23 H -0.270 1.270 24 H -0.289 1.289 25 H -0.256 1.256 26 C -0.105 4.105 27 C -0.123 4.123 28 H 0.052 0.948 29 H 0.067 0.933 30 H 0.059 0.941 31 H 0.058 0.942 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.068 0.932 36 H 0.049 0.951 37 H 0.141 0.859 38 H 0.141 0.859 39 H 0.424 0.576 40 H 0.106 0.894 41 H 0.115 0.885 42 H -0.012 1.012 43 H -0.020 1.020 44 H 0.262 0.738 45 H 0.136 0.864 46 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.080 11.330 -30.269 32.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.031 4.031 3 C -0.203 4.203 4 C -0.196 4.196 5 C -0.062 4.062 6 C -0.135 4.135 7 C -0.116 4.116 8 C -0.113 4.113 9 C 0.184 3.816 10 H 0.154 0.846 11 C -0.102 4.102 12 N -0.138 5.138 13 N -0.364 5.364 14 C 0.308 3.692 15 O -0.451 6.451 16 C -0.158 4.158 17 C 0.002 3.998 18 C -0.578 4.578 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.578 5.578 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.215 1.215 25 H -0.179 1.179 26 C -0.123 4.123 27 C -0.140 4.140 28 H 0.072 0.928 29 H 0.086 0.914 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.087 0.913 36 H 0.069 0.931 37 H 0.159 0.841 38 H 0.159 0.841 39 H 0.264 0.736 40 H 0.124 0.876 41 H 0.133 0.867 42 H 0.006 0.994 43 H -0.002 1.002 44 H 0.070 0.930 45 H 0.154 0.846 46 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -4.500 9.867 -30.246 32.131 hybrid contribution -0.134 0.210 1.216 1.241 sum -4.634 10.077 -29.030 31.077 Atomic orbital electron populations 1.21892 0.93001 1.02394 1.02253 1.19579 0.96173 0.95393 0.92004 1.21986 1.01230 0.94476 1.02613 1.21895 1.00855 1.00478 0.96357 1.20190 0.95957 0.94082 0.95961 1.21164 1.00425 0.94535 0.97408 1.21202 0.95999 1.00785 0.93639 1.19286 1.01856 0.95279 0.94914 1.16997 0.83340 0.95447 0.85842 0.84627 1.30126 0.95448 0.92556 0.92116 1.81187 1.13397 1.09730 1.09472 1.45995 1.75804 1.10910 1.03666 1.21512 0.73294 0.89471 0.84924 1.90698 1.50116 1.18294 1.86026 1.21674 1.05396 0.97982 0.90779 1.18719 0.94881 0.94441 0.91761 1.21722 1.50208 0.94106 0.91799 0.90422 1.26124 0.94835 0.96701 1.02887 1.70178 1.51425 1.13628 1.22555 0.85348 0.78657 0.78787 0.77618 1.19587 1.21513 1.17945 1.21149 0.99341 0.93540 0.98278 1.21372 0.97921 1.01202 0.93552 0.92838 0.91391 0.92182 0.92261 0.91549 0.91952 0.92185 0.91325 0.93150 0.84096 0.84142 0.73612 0.87624 0.86671 0.99376 1.00168 0.92953 0.84584 0.83648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.16 8.29 71.98 0.60 -0.56 16 2 C -0.03 -0.29 0.85 -52.93 -0.05 -0.34 16 3 C -0.15 -1.15 7.13 71.98 0.51 -0.63 16 4 C -0.14 -1.19 8.29 71.98 0.60 -0.59 16 5 C -0.06 -0.77 4.76 -19.87 -0.09 -0.86 16 6 C -0.12 -1.51 8.71 22.27 0.19 -1.32 16 7 C -0.10 -1.47 9.67 22.27 0.22 -1.25 16 8 C -0.11 -1.93 4.92 -19.87 -0.10 -2.02 16 9 C 0.29 6.66 2.62 42.44 0.11 6.78 16 10 H 0.14 3.19 7.44 -2.38 -0.02 3.17 16 11 C 0.22 6.27 14.90 89.43 1.33 7.60 16 12 N -0.46 -15.69 18.54 20.02 0.37 -15.32 16 13 N -0.71 -16.99 4.99 -454.82 -2.27 -19.26 16 14 C 0.52 18.40 7.77 87.66 0.68 19.08 16 15 O -0.57 -26.24 15.65 -3.04 -0.05 -26.29 16 16 C -0.12 -4.43 5.64 29.85 0.17 -4.26 16 17 C 0.04 2.14 4.26 29.85 0.13 2.27 16 18 C -0.54 -30.08 9.11 25.60 0.23 -29.84 16 19 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 20 C -0.01 -0.47 5.46 84.65 0.46 -0.01 16 21 N -0.94 -59.14 13.29 21.45 0.28 -58.86 16 22 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 23 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 24 H -0.29 -13.07 7.11 99.48 0.71 -12.36 16 25 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 26 C -0.10 -1.54 9.05 22.27 0.20 -1.34 16 27 C -0.12 -1.58 8.98 22.27 0.20 -1.38 16 28 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 29 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.48 7.39 -2.39 -0.02 0.47 16 31 H 0.06 0.48 7.51 -2.39 -0.02 0.46 16 32 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.48 7.51 -2.39 -0.02 0.46 16 34 H 0.06 0.49 7.39 -2.39 -0.02 0.47 16 35 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 37 H 0.14 1.31 7.10 -2.91 -0.02 1.29 16 38 H 0.14 1.73 8.04 -2.91 -0.02 1.70 16 39 H 0.42 7.06 6.86 -92.71 -0.64 6.42 16 40 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 41 H 0.12 3.61 8.14 -2.39 -0.02 3.59 16 42 H -0.01 -0.74 8.10 -2.39 -0.02 -0.76 16 43 H -0.02 -1.25 8.10 -2.39 -0.02 -1.27 16 44 H 0.26 15.51 8.31 -92.70 -0.77 14.74 16 45 H 0.14 1.60 6.90 -2.91 -0.02 1.58 16 46 H 0.15 1.37 5.90 -2.91 -0.02 1.35 16 Total: -1.00 -78.68 385.02 6.11 -72.58 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: 0.35 Total: 9.90 kcal Atomic # 6 Polarization: -14.07 SS G_CDS: 5.40 Total: -8.67 kcal Atomic # 7 Polarization: -91.82 SS G_CDS: -1.61 Total: -93.43 kcal Atomic # 8 Polarization: -26.24 SS G_CDS: -0.05 Total: -26.29 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -78.68 6.11 -72.58 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362123389.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.693 kcal (2) G-P(sol) polarization free energy of solvation -78.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.575 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.10 seconds