Wall clock time and date at job start Tue Mar 31 2020 10:54:10
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52995 * 1
3 3 C 1.52991 * 109.47721 * 2 1
4 4 C 1.53003 * 109.46811 * 239.99712 * 2 1 3
5 5 C 1.53009 * 109.47060 * 120.00395 * 2 1 3
6 6 H 1.08991 * 109.47111 * 179.97438 * 5 2 1
7 7 C 1.47200 * 109.47045 * 59.99427 * 5 2 1
8 8 N 3.43553 * 83.99336 * 158.55299 * 2 1 3
9 9 N 1.46502 * 109.46532 * 299.99616 * 5 2 1
10 10 C 1.34782 * 119.99757 * 204.99888 * 9 5 2
11 11 O 1.21285 * 119.99865 * 0.02562 * 10 9 5
12 12 C 1.50694 * 119.99874 * 179.97438 * 10 9 5
13 13 C 1.53001 * 109.47002 * 180.02562 * 12 10 9
14 14 H 1.09002 * 109.47153 * 54.99853 * 13 12 10
15 15 C 1.50702 * 109.47262 * 295.00447 * 13 12 10
16 16 H 1.08001 * 119.99665 * 325.12545 * 15 13 12
17 17 C 1.37872 * 120.00313 * 145.12800 * 15 13 12
18 18 N 1.31520 * 120.00191 * 184.98760 * 17 15 13
19 19 Si 1.86806 * 120.00125 * 4.98294 * 17 15 13
20 20 H 1.48504 * 109.46804 * 84.73081 * 19 17 15
21 21 H 1.48491 * 109.47440 * 204.73260 * 19 17 15
22 22 H 1.48498 * 109.47042 * 324.73578 * 19 17 15
23 23 C 1.50695 * 109.47521 * 175.00259 * 13 12 10
24 24 C 1.38235 * 119.99998 * 64.68935 * 23 13 12
25 25 C 1.38234 * 120.00198 * 179.78982 * 24 23 13
26 26 C 1.38241 * 120.00024 * 0.44499 * 25 24 23
27 27 C 1.38233 * 119.99722 * 359.81241 * 26 25 24
28 28 C 1.38236 * 120.00244 * 244.96795 * 23 13 12
29 29 H 1.09004 * 109.46969 * 300.00557 * 1 2 3
30 30 H 1.09000 * 109.47178 * 59.99348 * 1 2 3
31 31 H 1.08992 * 109.47886 * 180.02562 * 1 2 3
32 32 H 1.08999 * 109.47283 * 179.97438 * 3 2 1
33 33 H 1.09004 * 109.47254 * 300.00069 * 3 2 1
34 34 H 1.09005 * 109.47350 * 60.00235 * 3 2 1
35 35 H 1.09002 * 109.47509 * 300.00087 * 4 2 1
36 36 H 1.08993 * 109.47313 * 60.00517 * 4 2 1
37 37 H 1.08999 * 109.46884 * 180.02562 * 4 2 1
38 38 H 0.97001 * 120.00613 * 24.99930 * 9 5 2
39 39 H 1.08996 * 109.47686 * 299.99932 * 12 10 9
40 40 H 1.09004 * 109.47285 * 60.00379 * 12 10 9
41 41 H 0.96997 * 119.99876 * 179.97438 * 18 17 15
42 42 H 1.08005 * 120.00193 * 0.02562 * 24 23 13
43 43 H 1.08005 * 120.00272 * 180.27446 * 25 24 23
44 44 H 1.07989 * 119.99850 * 179.82915 * 26 25 24
45 45 H 1.07995 * 120.00164 * 180.02562 * 27 26 25
46 46 H 1.07997 * 119.99596 * 359.97438 * 28 23 13
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0399 -0.7213 -1.2493
5 6 2.0400 -0.7214 1.2493
6 1 3.1299 -0.7218 1.2490
7 6 1.5492 -2.1091 1.2492
8 7 1.1704 -3.1801 1.2493
9 7 1.5516 -0.0307 2.4454
10 6 2.2284 -0.1335 3.6064
11 8 3.2420 -0.7974 3.6608
12 6 1.7265 0.5774 4.8367
13 6 2.6707 0.2986 6.0078
14 1 3.6871 0.5770 5.7292
15 6 2.6277 -1.1685 6.3495
16 1 1.7029 -1.7182 6.2543
17 6 3.7687 -1.8091 6.7838
18 7 3.7563 -3.1083 6.9880
19 14 5.3325 -0.8317 7.0820
20 1 5.3014 -0.2531 8.4493
21 1 6.5091 -1.7279 6.9503
22 1 5.4300 0.2631 6.0834
23 6 2.2389 1.1060 7.2046
24 6 1.0170 0.8578 7.8014
25 6 0.6227 1.5955 8.9020
26 6 1.4463 2.5877 9.4002
27 6 2.6659 2.8395 8.8001
28 6 3.0621 2.0988 7.7022
29 1 -0.3633 0.5139 0.8900
30 1 -0.3633 0.5139 -0.8899
31 1 -0.3634 -1.0275 0.0005
32 1 3.1301 1.4423 0.0005
33 1 1.6768 1.9563 -0.8900
34 1 1.6768 1.9563 0.8900
35 1 1.6765 -1.7490 -1.2493
36 1 1.6766 -0.2075 -2.1392
37 1 3.1299 -0.7217 -1.2490
38 1 0.7412 0.5006 2.4019
39 1 1.6903 1.6502 4.6472
40 1 0.7270 0.2178 5.0818
41 1 4.5592 -3.5589 7.2932
42 1 0.3719 0.0849 7.4102
43 1 -0.3301 1.3985 9.3710
44 1 1.1370 3.1658 10.2582
45 1 3.3095 3.6144 9.1895
46 1 4.0149 2.2955 7.2334
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000362341182.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:54:10
Heat of formation + Delta-G solvation = 3.867410 kcal
Electronic energy + Delta-G solvation = -26296.118804 eV
Core-core repulsion = 22764.396928 eV
Total energy + Delta-G solvation = -3531.721876 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.86 seconds
Orbital eigenvalues (eV)
-39.99804 -38.71558 -37.75207 -35.62115 -34.18198 -33.32626 -31.67350 -30.23910
-29.31304 -27.83381 -27.57725 -27.22774 -25.44319 -22.64497 -21.88837 -20.56090
-19.94938 -19.22078 -17.77825 -16.96590 -16.70813 -16.18694 -15.89465 -14.90395
-14.56861 -14.47129 -14.14459 -14.03917 -13.94762 -13.74802 -13.29426 -12.94018
-12.75327 -12.61573 -12.56552 -12.49971 -12.35146 -12.27417 -12.09691 -11.89952
-11.87435 -11.83292 -11.22610 -11.13369 -11.07486 -10.84427 -10.79876 -10.52645
-10.39142 -9.89615 -9.62550 -9.17284 -9.11495 -8.98369 -8.44531 -8.25543
-7.84761 -5.97946 -3.95663 2.05785 2.11225 2.69021 2.95569 3.28484
3.40884 3.44547 3.45740 3.68528 4.05443 4.42164 4.49163 4.54596
4.55485 4.74224 5.09682 5.19783 5.32081 5.38943 5.44184 5.48922
5.52265 5.52680 5.61808 5.64059 5.65500 5.72543 5.74977 5.88802
5.90756 5.96639 6.02577 6.05257 6.07897 6.20888 6.29488 6.55271
6.59687 6.65855 6.79988 6.99956 7.11109 7.22940 7.55424 7.69756
7.74131 7.80182 7.82254 8.52212 8.83157 9.00910 9.65656 11.15177
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013898 B = 0.004219 C = 0.003696
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2014.162133 B = 6634.273334 C = 7573.923164
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C -0.068 4.068
3 C -0.139 4.139
4 C -0.146 4.146
5 C 0.252 3.748
6 H 0.126 0.874
7 C 0.200 3.800
8 N -0.423 5.423
9 N -0.737 5.737
10 C 0.515 3.485
11 O -0.488 6.488
12 C -0.114 4.114
13 C 0.046 3.954
14 H 0.059 0.941
15 C -0.488 4.488
16 H 0.070 0.930
17 C 0.087 3.913
18 N -0.896 5.896
19 Si 0.871 3.129
20 H -0.276 1.276
21 H -0.292 1.292
22 H -0.260 1.260
23 C -0.039 4.039
24 C -0.102 4.102
25 C -0.126 4.126
26 C -0.150 4.150
27 C -0.124 4.124
28 C -0.140 4.140
29 H 0.061 0.939
30 H 0.065 0.935
31 H 0.057 0.943
32 H 0.062 0.938
33 H 0.062 0.938
34 H 0.064 0.936
35 H 0.057 0.943
36 H 0.066 0.934
37 H 0.064 0.936
38 H 0.400 0.600
39 H 0.072 0.928
40 H 0.085 0.915
41 H 0.262 0.738
42 H 0.120 0.880
43 H 0.110 0.890
44 H 0.108 0.892
45 H 0.109 0.891
46 H 0.109 0.891
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.058 14.424 -11.672 19.519
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C -0.070 4.070
3 C -0.197 4.197
4 C -0.203 4.203
5 C 0.143 3.857
6 H 0.144 0.856
7 C -0.120 4.120
8 N -0.100 5.100
9 N -0.395 5.395
10 C 0.302 3.698
11 O -0.358 6.358
12 C -0.154 4.154
13 C 0.027 3.973
14 H 0.077 0.923
15 C -0.525 4.525
16 H 0.088 0.912
17 C -0.116 4.116
18 N -0.534 5.534
19 Si 0.699 3.301
20 H -0.202 1.202
21 H -0.218 1.218
22 H -0.186 1.186
23 C -0.040 4.040
24 C -0.120 4.120
25 C -0.144 4.144
26 C -0.168 4.168
27 C -0.142 4.142
28 C -0.158 4.158
29 H 0.080 0.920
30 H 0.084 0.916
31 H 0.076 0.924
32 H 0.081 0.919
33 H 0.081 0.919
34 H 0.083 0.917
35 H 0.076 0.924
36 H 0.085 0.915
37 H 0.083 0.917
38 H 0.236 0.764
39 H 0.091 0.909
40 H 0.103 0.897
41 H 0.072 0.928
42 H 0.138 0.862
43 H 0.128 0.872
44 H 0.126 0.874
45 H 0.127 0.873
46 H 0.127 0.873
Dipole moment (debyes) X Y Z Total
from point charges -5.720 12.141 -11.516 17.684
hybrid contribution 0.636 0.792 0.454 1.113
sum -5.083 12.933 -11.062 17.761
Atomic orbital electron populations
1.21970 0.93720 1.02469 1.02443 1.20780 0.96614 0.96444 0.93125
1.21847 1.01747 0.93589 1.02475 1.21909 1.01794 1.00364 0.96275
1.18296 1.00682 0.80165 0.86557 0.85643 1.29706 0.93587 0.95352
0.93401 1.81141 1.08997 1.12363 1.07495 1.46280 1.30802 1.53325
1.09066 1.21023 0.84033 0.81172 0.83608 1.90778 1.24044 1.37621
1.83354 1.21650 1.01921 0.98505 0.93336 1.18308 0.95638 0.96209
0.87153 0.92295 1.20585 0.97462 0.90067 1.44395 0.91175 1.24884
0.98237 0.94385 0.94111 1.69893 1.29043 1.08249 1.46167 0.86962
0.83720 0.80617 0.78790 1.20227 1.21827 1.18552 1.20778 0.92779
0.91837 0.98621 1.20978 0.96869 0.98447 0.95681 1.21070 0.99405
0.96768 0.97172 1.20867 0.95500 0.99753 1.00653 1.20963 0.96536
0.99974 0.96753 1.21079 0.99930 0.96990 0.97841 0.92040 0.91584
0.92388 0.91870 0.91908 0.91706 0.92440 0.91524 0.91691 0.76393
0.90937 0.89659 0.92819 0.86225 0.87170 0.87397 0.87326 0.87261
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.13 8.05 37.16 0.30 -0.83 16
2 C -0.07 -0.56 0.59 -154.51 -0.09 -0.65 16
3 C -0.14 -0.94 8.32 37.15 0.31 -0.63 16
4 C -0.15 -1.14 8.22 37.16 0.31 -0.83 16
5 C 0.25 3.11 1.72 -70.71 -0.12 2.99 16
6 H 0.13 1.64 7.58 -51.93 -0.39 1.25 16
7 C 0.20 3.18 12.38 -20.76 -0.26 2.92 16
8 N -0.42 -7.93 18.54 42.15 0.78 -7.14 16
9 N -0.74 -9.49 4.27 -56.54 -0.24 -9.73 16
10 C 0.51 9.27 7.52 -10.99 -0.08 9.19 16
11 O -0.49 -11.36 14.65 5.55 0.08 -11.28 16
12 C -0.11 -1.97 4.96 -27.89 -0.14 -2.11 16
13 C 0.05 1.02 1.21 -92.92 -0.11 0.91 16
14 H 0.06 1.39 4.70 -51.93 -0.24 1.15 16
15 C -0.49 -13.28 6.87 -34.44 -0.24 -13.51 16
16 H 0.07 2.09 8.06 -52.49 -0.42 1.66 16
17 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16
18 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16
19 Si 0.87 22.55 27.15 -169.99 -4.62 17.93 16
20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16
21 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16
22 H -0.26 -6.39 6.06 56.52 0.34 -6.05 16
23 C -0.04 -0.80 4.55 -104.63 -0.48 -1.27 16
24 C -0.10 -1.92 8.87 -39.58 -0.35 -2.27 16
25 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16
26 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16
27 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16
28 C -0.14 -2.64 9.43 -39.58 -0.37 -3.02 16
29 H 0.06 0.41 6.51 -51.93 -0.34 0.08 16
30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16
31 H 0.06 0.54 7.22 -51.93 -0.38 0.17 16
32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16
33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16
34 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16
35 H 0.06 0.53 7.23 -51.93 -0.38 0.16 16
36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16
37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16
38 H 0.40 3.80 6.65 -40.82 -0.27 3.53 16
39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16
40 H 0.09 1.40 7.86 -51.93 -0.41 0.99 16
41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16
42 H 0.12 2.25 7.80 -52.48 -0.41 1.84 16
43 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16
44 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16
45 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16
46 H 0.11 1.99 7.95 -52.49 -0.42 1.57 16
LS Contribution 377.47 15.07 5.69 5.69
Total: -1.00 -35.51 377.47 -7.19 -42.70
By element:
Atomic # 1 Polarization: 10.79 SS G_CDS: -7.04 Total: 3.75 kcal
Atomic # 6 Polarization: -11.76 SS G_CDS: -2.62 Total: -14.38 kcal
Atomic # 7 Polarization: -45.72 SS G_CDS: 1.31 Total: -44.41 kcal
Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal
Atomic # 14 Polarization: 22.55 SS G_CDS: -4.62 Total: 17.93 kcal
Total LS contribution 5.69 Total: 5.69 kcal
Total: -35.51 -7.19 -42.70 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000362341182.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 46.568 kcal
(2) G-P(sol) polarization free energy of solvation -35.510 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.058 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal
(6) G-S(sol) free energy of system = (1) + (5) 3.867 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.86 seconds