Wall clock time and date at job start Tue Mar 31 2020 10:54:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47721 * 2 1 4 4 C 1.53003 * 109.46811 * 239.99712 * 2 1 3 5 5 C 1.53009 * 109.47060 * 120.00395 * 2 1 3 6 6 H 1.08991 * 109.47111 * 179.97438 * 5 2 1 7 7 C 1.47200 * 109.47045 * 59.99427 * 5 2 1 8 8 N 3.43553 * 83.99336 * 158.55299 * 2 1 3 9 9 N 1.46502 * 109.46532 * 299.99616 * 5 2 1 10 10 C 1.34782 * 119.99757 * 204.99888 * 9 5 2 11 11 O 1.21285 * 119.99865 * 0.02562 * 10 9 5 12 12 C 1.50694 * 119.99874 * 179.97438 * 10 9 5 13 13 C 1.53001 * 109.47002 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47153 * 54.99853 * 13 12 10 15 15 C 1.50702 * 109.47262 * 295.00447 * 13 12 10 16 16 H 1.08001 * 119.99665 * 325.12545 * 15 13 12 17 17 C 1.37872 * 120.00313 * 145.12800 * 15 13 12 18 18 N 1.31520 * 120.00191 * 184.98760 * 17 15 13 19 19 Si 1.86806 * 120.00125 * 4.98294 * 17 15 13 20 20 H 1.48504 * 109.46804 * 84.73081 * 19 17 15 21 21 H 1.48491 * 109.47440 * 204.73260 * 19 17 15 22 22 H 1.48498 * 109.47042 * 324.73578 * 19 17 15 23 23 C 1.50695 * 109.47521 * 175.00259 * 13 12 10 24 24 C 1.38235 * 119.99998 * 64.68935 * 23 13 12 25 25 C 1.38234 * 120.00198 * 179.78982 * 24 23 13 26 26 C 1.38241 * 120.00024 * 0.44499 * 25 24 23 27 27 C 1.38233 * 119.99722 * 359.81241 * 26 25 24 28 28 C 1.38236 * 120.00244 * 244.96795 * 23 13 12 29 29 H 1.09004 * 109.46969 * 300.00557 * 1 2 3 30 30 H 1.09000 * 109.47178 * 59.99348 * 1 2 3 31 31 H 1.08992 * 109.47886 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47283 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47254 * 300.00069 * 3 2 1 34 34 H 1.09005 * 109.47350 * 60.00235 * 3 2 1 35 35 H 1.09002 * 109.47509 * 300.00087 * 4 2 1 36 36 H 1.08993 * 109.47313 * 60.00517 * 4 2 1 37 37 H 1.08999 * 109.46884 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00613 * 24.99930 * 9 5 2 39 39 H 1.08996 * 109.47686 * 299.99932 * 12 10 9 40 40 H 1.09004 * 109.47285 * 60.00379 * 12 10 9 41 41 H 0.96997 * 119.99876 * 179.97438 * 18 17 15 42 42 H 1.08005 * 120.00193 * 0.02562 * 24 23 13 43 43 H 1.08005 * 120.00272 * 180.27446 * 25 24 23 44 44 H 1.07989 * 119.99850 * 179.82915 * 26 25 24 45 45 H 1.07995 * 120.00164 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.99596 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2493 6 1 3.1299 -0.7218 1.2490 7 6 1.5492 -2.1091 1.2492 8 7 1.1704 -3.1801 1.2493 9 7 1.5516 -0.0307 2.4454 10 6 2.2284 -0.1335 3.6064 11 8 3.2420 -0.7974 3.6608 12 6 1.7265 0.5774 4.8367 13 6 2.6707 0.2986 6.0078 14 1 3.6871 0.5770 5.7292 15 6 2.6277 -1.1685 6.3495 16 1 1.7029 -1.7182 6.2543 17 6 3.7687 -1.8091 6.7838 18 7 3.7563 -3.1083 6.9880 19 14 5.3325 -0.8317 7.0820 20 1 5.3014 -0.2531 8.4493 21 1 6.5091 -1.7279 6.9503 22 1 5.4300 0.2631 6.0834 23 6 2.2389 1.1060 7.2046 24 6 1.0170 0.8578 7.8014 25 6 0.6227 1.5955 8.9020 26 6 1.4463 2.5877 9.4002 27 6 2.6659 2.8395 8.8001 28 6 3.0621 2.0988 7.7022 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6765 -1.7490 -1.2493 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 0.7412 0.5006 2.4019 39 1 1.6903 1.6502 4.6472 40 1 0.7270 0.2178 5.0818 41 1 4.5592 -3.5589 7.2932 42 1 0.3719 0.0849 7.4102 43 1 -0.3301 1.3985 9.3710 44 1 1.1370 3.1658 10.2582 45 1 3.3095 3.6144 9.1895 46 1 4.0149 2.2955 7.2334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000362341182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:10 Heat of formation + Delta-G solvation = 3.867410 kcal Electronic energy + Delta-G solvation = -26296.118804 eV Core-core repulsion = 22764.396928 eV Total energy + Delta-G solvation = -3531.721876 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.99804 -38.71558 -37.75207 -35.62115 -34.18198 -33.32626 -31.67350 -30.23910 -29.31304 -27.83381 -27.57725 -27.22774 -25.44319 -22.64497 -21.88837 -20.56090 -19.94938 -19.22078 -17.77825 -16.96590 -16.70813 -16.18694 -15.89465 -14.90395 -14.56861 -14.47129 -14.14459 -14.03917 -13.94762 -13.74802 -13.29426 -12.94018 -12.75327 -12.61573 -12.56552 -12.49971 -12.35146 -12.27417 -12.09691 -11.89952 -11.87435 -11.83292 -11.22610 -11.13369 -11.07486 -10.84427 -10.79876 -10.52645 -10.39142 -9.89615 -9.62550 -9.17284 -9.11495 -8.98369 -8.44531 -8.25543 -7.84761 -5.97946 -3.95663 2.05785 2.11225 2.69021 2.95569 3.28484 3.40884 3.44547 3.45740 3.68528 4.05443 4.42164 4.49163 4.54596 4.55485 4.74224 5.09682 5.19783 5.32081 5.38943 5.44184 5.48922 5.52265 5.52680 5.61808 5.64059 5.65500 5.72543 5.74977 5.88802 5.90756 5.96639 6.02577 6.05257 6.07897 6.20888 6.29488 6.55271 6.59687 6.65855 6.79988 6.99956 7.11109 7.22940 7.55424 7.69756 7.74131 7.80182 7.82254 8.52212 8.83157 9.00910 9.65656 11.15177 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.004219 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.162133 B = 6634.273334 C = 7573.923164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.068 4.068 3 C -0.139 4.139 4 C -0.146 4.146 5 C 0.252 3.748 6 H 0.126 0.874 7 C 0.200 3.800 8 N -0.423 5.423 9 N -0.737 5.737 10 C 0.515 3.485 11 O -0.488 6.488 12 C -0.114 4.114 13 C 0.046 3.954 14 H 0.059 0.941 15 C -0.488 4.488 16 H 0.070 0.930 17 C 0.087 3.913 18 N -0.896 5.896 19 Si 0.871 3.129 20 H -0.276 1.276 21 H -0.292 1.292 22 H -0.260 1.260 23 C -0.039 4.039 24 C -0.102 4.102 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.124 4.124 28 C -0.140 4.140 29 H 0.061 0.939 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.066 0.934 37 H 0.064 0.936 38 H 0.400 0.600 39 H 0.072 0.928 40 H 0.085 0.915 41 H 0.262 0.738 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.108 0.892 45 H 0.109 0.891 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.058 14.424 -11.672 19.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.070 4.070 3 C -0.197 4.197 4 C -0.203 4.203 5 C 0.143 3.857 6 H 0.144 0.856 7 C -0.120 4.120 8 N -0.100 5.100 9 N -0.395 5.395 10 C 0.302 3.698 11 O -0.358 6.358 12 C -0.154 4.154 13 C 0.027 3.973 14 H 0.077 0.923 15 C -0.525 4.525 16 H 0.088 0.912 17 C -0.116 4.116 18 N -0.534 5.534 19 Si 0.699 3.301 20 H -0.202 1.202 21 H -0.218 1.218 22 H -0.186 1.186 23 C -0.040 4.040 24 C -0.120 4.120 25 C -0.144 4.144 26 C -0.168 4.168 27 C -0.142 4.142 28 C -0.158 4.158 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.085 0.915 37 H 0.083 0.917 38 H 0.236 0.764 39 H 0.091 0.909 40 H 0.103 0.897 41 H 0.072 0.928 42 H 0.138 0.862 43 H 0.128 0.872 44 H 0.126 0.874 45 H 0.127 0.873 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.720 12.141 -11.516 17.684 hybrid contribution 0.636 0.792 0.454 1.113 sum -5.083 12.933 -11.062 17.761 Atomic orbital electron populations 1.21970 0.93720 1.02469 1.02443 1.20780 0.96614 0.96444 0.93125 1.21847 1.01747 0.93589 1.02475 1.21909 1.01794 1.00364 0.96275 1.18296 1.00682 0.80165 0.86557 0.85643 1.29706 0.93587 0.95352 0.93401 1.81141 1.08997 1.12363 1.07495 1.46280 1.30802 1.53325 1.09066 1.21023 0.84033 0.81172 0.83608 1.90778 1.24044 1.37621 1.83354 1.21650 1.01921 0.98505 0.93336 1.18308 0.95638 0.96209 0.87153 0.92295 1.20585 0.97462 0.90067 1.44395 0.91175 1.24884 0.98237 0.94385 0.94111 1.69893 1.29043 1.08249 1.46167 0.86962 0.83720 0.80617 0.78790 1.20227 1.21827 1.18552 1.20778 0.92779 0.91837 0.98621 1.20978 0.96869 0.98447 0.95681 1.21070 0.99405 0.96768 0.97172 1.20867 0.95500 0.99753 1.00653 1.20963 0.96536 0.99974 0.96753 1.21079 0.99930 0.96990 0.97841 0.92040 0.91584 0.92388 0.91870 0.91908 0.91706 0.92440 0.91524 0.91691 0.76393 0.90937 0.89659 0.92819 0.86225 0.87170 0.87397 0.87326 0.87261 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.13 8.05 37.16 0.30 -0.83 16 2 C -0.07 -0.56 0.59 -154.51 -0.09 -0.65 16 3 C -0.14 -0.94 8.32 37.15 0.31 -0.63 16 4 C -0.15 -1.14 8.22 37.16 0.31 -0.83 16 5 C 0.25 3.11 1.72 -70.71 -0.12 2.99 16 6 H 0.13 1.64 7.58 -51.93 -0.39 1.25 16 7 C 0.20 3.18 12.38 -20.76 -0.26 2.92 16 8 N -0.42 -7.93 18.54 42.15 0.78 -7.14 16 9 N -0.74 -9.49 4.27 -56.54 -0.24 -9.73 16 10 C 0.51 9.27 7.52 -10.99 -0.08 9.19 16 11 O -0.49 -11.36 14.65 5.55 0.08 -11.28 16 12 C -0.11 -1.97 4.96 -27.89 -0.14 -2.11 16 13 C 0.05 1.02 1.21 -92.92 -0.11 0.91 16 14 H 0.06 1.39 4.70 -51.93 -0.24 1.15 16 15 C -0.49 -13.28 6.87 -34.44 -0.24 -13.51 16 16 H 0.07 2.09 8.06 -52.49 -0.42 1.66 16 17 C 0.09 2.54 5.47 -17.82 -0.10 2.45 16 18 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 19 Si 0.87 22.55 27.15 -169.99 -4.62 17.93 16 20 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 21 H -0.29 -7.66 7.11 56.52 0.40 -7.26 16 22 H -0.26 -6.39 6.06 56.52 0.34 -6.05 16 23 C -0.04 -0.80 4.55 -104.63 -0.48 -1.27 16 24 C -0.10 -1.92 8.87 -39.58 -0.35 -2.27 16 25 C -0.13 -2.09 10.05 -39.58 -0.40 -2.49 16 26 C -0.15 -2.36 10.05 -39.58 -0.40 -2.76 16 27 C -0.12 -2.06 10.05 -39.58 -0.40 -2.46 16 28 C -0.14 -2.64 9.43 -39.58 -0.37 -3.02 16 29 H 0.06 0.41 6.51 -51.93 -0.34 0.08 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.54 7.22 -51.93 -0.38 0.17 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.43 7.45 -51.93 -0.39 0.04 16 35 H 0.06 0.53 7.23 -51.93 -0.38 0.16 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.40 3.80 6.65 -40.82 -0.27 3.53 16 39 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.09 1.40 7.86 -51.93 -0.41 0.99 16 41 H 0.26 7.88 8.31 -40.82 -0.34 7.54 16 42 H 0.12 2.25 7.80 -52.48 -0.41 1.84 16 43 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 45 H 0.11 1.50 8.06 -52.49 -0.42 1.08 16 46 H 0.11 1.99 7.95 -52.49 -0.42 1.57 16 LS Contribution 377.47 15.07 5.69 5.69 Total: -1.00 -35.51 377.47 -7.19 -42.70 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: -7.04 Total: 3.75 kcal Atomic # 6 Polarization: -11.76 SS G_CDS: -2.62 Total: -14.38 kcal Atomic # 7 Polarization: -45.72 SS G_CDS: 1.31 Total: -44.41 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.08 Total: -11.28 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -4.62 Total: 17.93 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -35.51 -7.19 -42.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362341182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.568 kcal (2) G-P(sol) polarization free energy of solvation -35.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.700 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds