Wall clock time and date at job start Tue Mar 31 2020 10:54:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52991 * 109.47721 * 2 1 4 4 C 1.53003 * 109.46811 * 239.99712 * 2 1 3 5 5 C 1.53009 * 109.47060 * 120.00395 * 2 1 3 6 6 H 1.08991 * 109.47111 * 179.97438 * 5 2 1 7 7 C 1.47200 * 109.47045 * 59.99427 * 5 2 1 8 8 N 3.43553 * 83.99336 * 158.55299 * 2 1 3 9 9 N 1.46502 * 109.46532 * 299.99616 * 5 2 1 10 10 C 1.34782 * 119.99757 * 204.99888 * 9 5 2 11 11 O 1.21285 * 119.99865 * 0.02562 * 10 9 5 12 12 C 1.50694 * 119.99874 * 179.97438 * 10 9 5 13 13 C 1.53001 * 109.47002 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.47153 * 54.99853 * 13 12 10 15 15 C 1.50702 * 109.47262 * 295.00447 * 13 12 10 16 16 H 1.08001 * 119.99665 * 325.12545 * 15 13 12 17 17 C 1.37872 * 120.00313 * 145.12800 * 15 13 12 18 18 N 1.31520 * 120.00191 * 184.98760 * 17 15 13 19 19 Si 1.86806 * 120.00125 * 4.98294 * 17 15 13 20 20 H 1.48504 * 109.46804 * 84.73081 * 19 17 15 21 21 H 1.48491 * 109.47440 * 204.73260 * 19 17 15 22 22 H 1.48498 * 109.47042 * 324.73578 * 19 17 15 23 23 C 1.50695 * 109.47521 * 175.00259 * 13 12 10 24 24 C 1.38235 * 119.99998 * 64.68935 * 23 13 12 25 25 C 1.38234 * 120.00198 * 179.78982 * 24 23 13 26 26 C 1.38241 * 120.00024 * 0.44499 * 25 24 23 27 27 C 1.38233 * 119.99722 * 359.81241 * 26 25 24 28 28 C 1.38236 * 120.00244 * 244.96795 * 23 13 12 29 29 H 1.09004 * 109.46969 * 300.00557 * 1 2 3 30 30 H 1.09000 * 109.47178 * 59.99348 * 1 2 3 31 31 H 1.08992 * 109.47886 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47283 * 179.97438 * 3 2 1 33 33 H 1.09004 * 109.47254 * 300.00069 * 3 2 1 34 34 H 1.09005 * 109.47350 * 60.00235 * 3 2 1 35 35 H 1.09002 * 109.47509 * 300.00087 * 4 2 1 36 36 H 1.08993 * 109.47313 * 60.00517 * 4 2 1 37 37 H 1.08999 * 109.46884 * 180.02562 * 4 2 1 38 38 H 0.97001 * 120.00613 * 24.99930 * 9 5 2 39 39 H 1.08996 * 109.47686 * 299.99932 * 12 10 9 40 40 H 1.09004 * 109.47285 * 60.00379 * 12 10 9 41 41 H 0.96997 * 119.99876 * 179.97438 * 18 17 15 42 42 H 1.08005 * 120.00193 * 0.02562 * 24 23 13 43 43 H 1.08005 * 120.00272 * 180.27446 * 25 24 23 44 44 H 1.07989 * 119.99850 * 179.82915 * 26 25 24 45 45 H 1.07995 * 120.00164 * 180.02562 * 27 26 25 46 46 H 1.07997 * 119.99596 * 359.97438 * 28 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 2.0400 -0.7214 1.2493 6 1 3.1299 -0.7218 1.2490 7 6 1.5492 -2.1091 1.2492 8 7 1.1704 -3.1801 1.2493 9 7 1.5516 -0.0307 2.4454 10 6 2.2284 -0.1335 3.6064 11 8 3.2420 -0.7974 3.6608 12 6 1.7265 0.5774 4.8367 13 6 2.6707 0.2986 6.0078 14 1 3.6871 0.5770 5.7292 15 6 2.6277 -1.1685 6.3495 16 1 1.7029 -1.7182 6.2543 17 6 3.7687 -1.8091 6.7838 18 7 3.7563 -3.1083 6.9880 19 14 5.3325 -0.8317 7.0820 20 1 5.3014 -0.2531 8.4493 21 1 6.5091 -1.7279 6.9503 22 1 5.4300 0.2631 6.0834 23 6 2.2389 1.1060 7.2046 24 6 1.0170 0.8578 7.8014 25 6 0.6227 1.5955 8.9020 26 6 1.4463 2.5877 9.4002 27 6 2.6659 2.8395 8.8001 28 6 3.0621 2.0988 7.7022 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 3.1301 1.4423 0.0005 33 1 1.6768 1.9563 -0.8900 34 1 1.6768 1.9563 0.8900 35 1 1.6765 -1.7490 -1.2493 36 1 1.6766 -0.2075 -2.1392 37 1 3.1299 -0.7217 -1.2490 38 1 0.7412 0.5006 2.4019 39 1 1.6903 1.6502 4.6472 40 1 0.7270 0.2178 5.0818 41 1 4.5592 -3.5589 7.2932 42 1 0.3719 0.0849 7.4102 43 1 -0.3301 1.3985 9.3710 44 1 1.1370 3.1658 10.2582 45 1 3.3095 3.6144 9.1895 46 1 4.0149 2.2955 7.2334 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362341182.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:09 Heat of formation + Delta-G solvation = -18.781372 kcal Electronic energy + Delta-G solvation = -26297.100929 eV Core-core repulsion = 22764.396928 eV Total energy + Delta-G solvation = -3532.704001 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.24494 -40.05595 -39.00188 -36.89856 -35.86622 -34.57127 -33.69885 -31.58259 -30.65488 -28.92954 -28.25690 -28.09833 -27.07306 -24.25870 -23.26022 -21.90573 -21.04463 -20.52130 -19.09221 -18.92996 -18.04679 -17.25945 -17.21044 -16.46065 -16.02926 -15.68296 -15.53413 -15.43101 -14.97470 -14.78225 -14.69702 -14.51285 -14.20072 -14.08351 -13.87380 -13.81362 -13.62941 -13.34814 -13.24336 -13.00256 -12.89062 -12.78495 -12.72360 -12.50383 -12.05929 -11.87738 -11.85945 -11.80878 -11.72508 -11.62069 -11.46107 -10.99948 -10.78621 -10.52990 -10.33132 -9.60809 -9.28946 -8.21924 -6.19394 0.69872 0.74687 1.30627 1.34811 1.39408 1.40406 1.67543 1.86060 2.39880 2.45641 2.92852 3.09470 3.23320 3.58409 3.82948 4.00098 4.10010 4.15433 4.31767 4.33328 4.39087 4.47292 4.48961 4.53350 4.69050 4.78209 4.87117 4.87977 4.89535 4.93198 5.05983 5.09089 5.10828 5.15247 5.23183 5.30687 5.39890 5.41784 5.42817 5.44448 5.54513 5.70298 5.78800 5.84383 6.03272 6.33612 6.37631 6.44542 6.63876 6.81200 7.44421 7.46333 8.95673 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013898 B = 0.004219 C = 0.003696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.162133 B = 6634.273334 C = 7573.923164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.056 4.056 3 C -0.137 4.137 4 C -0.147 4.147 5 C 0.248 3.752 6 H 0.120 0.880 7 C 0.217 3.783 8 N -0.479 5.479 9 N -0.713 5.713 10 C 0.514 3.486 11 O -0.549 6.549 12 C -0.111 4.111 13 C 0.048 3.952 14 H 0.044 0.956 15 C -0.463 4.463 16 H 0.028 0.972 17 C 0.019 3.981 18 N -0.957 5.957 19 Si 0.924 3.076 20 H -0.266 1.266 21 H -0.303 1.303 22 H -0.240 1.240 23 C -0.062 4.062 24 C -0.120 4.120 25 C -0.126 4.126 26 C -0.141 4.141 27 C -0.123 4.123 28 C -0.154 4.154 29 H 0.072 0.928 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.069 0.931 35 H 0.035 0.965 36 H 0.091 0.909 37 H 0.066 0.934 38 H 0.420 0.580 39 H 0.118 0.882 40 H 0.093 0.907 41 H 0.257 0.743 42 H 0.107 0.893 43 H 0.137 0.863 44 H 0.145 0.855 45 H 0.141 0.859 46 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.954 19.184 -11.765 23.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.058 4.058 3 C -0.194 4.194 4 C -0.204 4.204 5 C 0.139 3.861 6 H 0.138 0.862 7 C -0.102 4.102 8 N -0.157 5.157 9 N -0.370 5.370 10 C 0.302 3.698 11 O -0.424 6.424 12 C -0.151 4.151 13 C 0.028 3.972 14 H 0.062 0.938 15 C -0.501 4.501 16 H 0.046 0.954 17 C -0.177 4.177 18 N -0.599 5.599 19 Si 0.750 3.250 20 H -0.191 1.191 21 H -0.230 1.230 22 H -0.164 1.164 23 C -0.063 4.063 24 C -0.138 4.138 25 C -0.143 4.143 26 C -0.159 4.159 27 C -0.141 4.141 28 C -0.172 4.172 29 H 0.090 0.910 30 H 0.109 0.891 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.086 0.914 38 H 0.260 0.740 39 H 0.136 0.864 40 H 0.112 0.888 41 H 0.065 0.935 42 H 0.125 0.875 43 H 0.155 0.845 44 H 0.163 0.837 45 H 0.159 0.841 46 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.680 16.974 -11.642 21.640 hybrid contribution 0.756 -0.600 0.472 1.075 sum -5.924 16.374 -11.170 20.687 Atomic orbital electron populations 1.22010 0.92878 1.01545 1.04258 1.20800 0.97174 0.97071 0.90720 1.21864 1.01644 0.91994 1.03895 1.21946 1.02043 0.99409 0.97026 1.18764 1.00510 0.78756 0.88094 0.86202 1.30462 0.92157 0.95857 0.91700 1.81140 1.10999 1.14144 1.09417 1.45952 1.30744 1.52364 1.07962 1.21220 0.83404 0.80285 0.84924 1.90767 1.26833 1.40341 1.84483 1.21601 1.00829 1.01325 0.91368 1.18174 0.96250 0.92898 0.89856 0.93757 1.20831 0.95078 0.92887 1.41281 0.95392 1.25687 1.01780 0.95068 0.95129 1.70067 1.29642 1.10283 1.49919 0.86096 0.79676 0.79632 0.79547 1.19100 1.23017 1.16395 1.20488 0.94113 0.93435 0.98225 1.21004 0.96668 0.99049 0.97073 1.21392 1.00667 0.96198 0.96088 1.21333 0.94658 0.98929 1.00950 1.21348 0.97214 0.99914 0.95575 1.21230 0.99838 0.97303 0.98862 0.90958 0.89100 0.94659 0.92158 0.89552 0.91234 0.94534 0.89006 0.91446 0.73988 0.86354 0.88848 0.93459 0.87481 0.84541 0.83698 0.84126 0.86983 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 8.05 71.98 0.58 -1.34 16 2 C -0.06 -0.81 0.59 -52.18 -0.03 -0.85 16 3 C -0.14 -1.38 8.32 71.98 0.60 -0.78 16 4 C -0.15 -2.06 8.22 71.98 0.59 -1.47 16 5 C 0.25 6.03 1.72 43.19 0.07 6.10 16 6 H 0.12 3.17 7.58 -2.39 -0.02 3.15 16 7 C 0.22 7.18 12.38 89.44 1.11 8.28 16 8 N -0.48 -18.92 18.54 20.00 0.37 -18.54 16 9 N -0.71 -17.57 4.27 -451.19 -1.93 -19.49 16 10 C 0.51 18.44 7.52 87.65 0.66 19.10 16 11 O -0.55 -26.35 14.65 -3.05 -0.04 -26.39 16 12 C -0.11 -3.74 4.96 29.85 0.15 -3.59 16 13 C 0.05 2.09 1.21 -12.29 -0.01 2.07 16 14 H 0.04 2.08 4.70 -2.39 -0.01 2.07 16 15 C -0.46 -26.22 6.87 25.60 0.18 -26.04 16 16 H 0.03 1.77 8.06 -2.91 -0.02 1.74 16 17 C 0.02 1.18 5.47 84.65 0.46 1.64 16 18 N -0.96 -64.09 13.96 21.45 0.30 -63.79 16 19 Si 0.92 47.77 27.15 68.60 1.86 49.63 16 20 H -0.27 -13.09 7.11 99.48 0.71 -12.38 16 21 H -0.30 -16.01 7.11 99.48 0.71 -15.30 16 22 H -0.24 -11.45 6.06 99.48 0.60 -10.85 16 23 C -0.06 -2.43 4.55 -19.87 -0.09 -2.52 16 24 C -0.12 -4.38 8.87 22.27 0.20 -4.18 16 25 C -0.13 -3.76 10.05 22.27 0.22 -3.53 16 26 C -0.14 -3.79 10.05 22.27 0.22 -3.56 16 27 C -0.12 -3.53 10.05 22.27 0.22 -3.31 16 28 C -0.15 -5.40 9.43 22.27 0.21 -5.19 16 29 H 0.07 0.75 6.51 -2.38 -0.02 0.74 16 30 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 31 H 0.03 0.63 7.22 -2.39 -0.02 0.61 16 32 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 33 H 0.09 0.53 8.14 -2.38 -0.02 0.52 16 34 H 0.07 0.66 7.45 -2.38 -0.02 0.64 16 35 H 0.04 0.67 7.23 -2.39 -0.02 0.65 16 36 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.90 16 38 H 0.42 6.96 6.65 -92.71 -0.62 6.34 16 39 H 0.12 2.90 8.14 -2.39 -0.02 2.88 16 40 H 0.09 3.00 7.86 -2.38 -0.02 2.98 16 41 H 0.26 16.44 8.31 -92.71 -0.77 15.67 16 42 H 0.11 4.07 7.80 -2.91 -0.02 4.05 16 43 H 0.14 3.30 8.06 -2.91 -0.02 3.28 16 44 H 0.15 2.86 8.06 -2.92 -0.02 2.83 16 45 H 0.14 3.13 8.06 -2.91 -0.02 3.11 16 46 H 0.11 3.79 7.95 -2.91 -0.02 3.76 16 Total: -1.00 -84.31 377.47 6.16 -78.15 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: 0.26 Total: 19.61 kcal Atomic # 6 Polarization: -24.51 SS G_CDS: 5.34 Total: -19.17 kcal Atomic # 7 Polarization: -100.57 SS G_CDS: -1.26 Total: -101.83 kcal Atomic # 8 Polarization: -26.35 SS G_CDS: -0.04 Total: -26.39 kcal Atomic # 14 Polarization: 47.77 SS G_CDS: 1.86 Total: 49.63 kcal Total: -84.31 6.16 -78.15 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362341182.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.367 kcal (2) G-P(sol) polarization free energy of solvation -84.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.149 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds