Wall clock time and date at job start Tue Mar 31 2020 10:55:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 C 1.53009 * 109.47071 * 239.99664 * 2 1 3 5 5 C 1.50694 * 109.46838 * 60.00627 * 4 2 1 6 6 H 1.08004 * 120.00541 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99923 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99918 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00206 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47223 * 59.99953 * 9 7 5 11 11 H 1.48505 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47096 * 299.99746 * 9 7 5 13 13 C 1.52999 * 109.47018 * 120.00150 * 2 1 3 14 14 N 1.46897 * 109.47102 * 300.00022 * 13 2 1 15 15 C 1.46894 * 111.00413 * 180.02562 * 14 13 2 16 16 C 1.50703 * 109.47549 * 179.97438 * 15 14 13 17 17 N 1.34140 * 126.24440 * 275.55958 * 16 15 14 18 18 C 1.30360 * 108.90605 * 180.26605 * 17 16 15 19 19 O 1.34003 * 109.03161 * 359.73285 * 18 17 16 20 20 C 1.35113 * 107.71259 * 359.97438 * 19 18 17 21 21 C 1.47828 * 126.58140 * 180.02562 * 20 19 18 22 22 C 1.39577 * 120.14734 * 312.98907 * 21 20 19 23 23 C 1.37957 * 119.85407 * 179.97438 * 22 21 20 24 24 C 1.38358 * 120.14445 * 359.97438 * 23 22 21 25 25 C 1.38345 * 120.29417 * 359.97438 * 24 23 22 26 26 C 1.37959 * 120.14708 * 0.02562 * 25 24 23 27 27 H 1.08992 * 109.47338 * 300.00081 * 1 2 3 28 28 H 1.09003 * 109.47022 * 60.00365 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46725 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46824 * 299.99755 * 3 2 1 32 32 H 1.08992 * 109.47031 * 59.99731 * 3 2 1 33 33 H 1.09007 * 109.46825 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47293 * 299.99823 * 4 2 1 35 35 H 0.97004 * 119.99726 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.47362 * 180.02562 * 13 2 1 37 37 H 1.09007 * 109.47450 * 59.99896 * 13 2 1 38 38 H 1.00905 * 111.00169 * 303.95347 * 14 13 2 39 39 H 1.09003 * 109.47082 * 59.99899 * 15 14 13 40 40 H 1.08996 * 109.46995 * 299.99868 * 15 14 13 41 41 H 1.07997 * 125.48090 * 179.72768 * 18 17 16 42 42 H 1.08004 * 120.06813 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.92612 * 179.72454 * 23 22 21 44 44 H 1.08000 * 119.84932 * 179.97438 * 24 23 22 45 45 H 1.08002 * 119.92750 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.07773 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3807 7 6 1.8713 -0.4817 -3.7319 8 7 2.6281 -1.5505 -3.8526 9 14 1.2482 0.3985 -5.2572 10 1 1.7422 1.7988 -5.2571 11 1 1.7433 -0.3016 -6.4697 12 1 -0.2369 0.3974 -5.2574 13 6 2.0399 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4486 15 6 2.0217 -0.6945 3.6703 16 6 1.5011 0.0428 4.8771 17 7 2.0578 1.1209 5.4489 18 6 1.3327 1.4785 6.4716 19 8 0.2894 0.6446 6.5804 20 6 0.3807 -0.2606 5.5815 21 6 -0.5559 -1.3719 5.3113 22 6 -0.9797 -2.2001 6.3518 23 6 -1.8543 -3.2352 6.0930 24 6 -2.3117 -3.4528 4.8054 25 6 -1.8963 -2.6350 3.7697 26 6 -1.0220 -1.5964 4.0149 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2492 35 1 2.8630 -1.8815 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7490 1.2493 38 1 1.8197 0.9435 2.4402 39 1 3.1116 -0.6940 3.6869 40 1 1.6586 -1.7221 3.6873 41 1 1.5396 2.3125 7.1258 42 1 -0.6238 -2.0309 7.3574 43 1 -2.1795 -3.8794 6.8964 44 1 -2.9959 -4.2648 4.6081 45 1 -2.2574 -2.8100 2.7670 46 1 -0.6988 -0.9584 3.2057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000370558265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:29 Heat of formation + Delta-G solvation = 33.940810 kcal Electronic energy + Delta-G solvation = -25850.494831 eV Core-core repulsion = 22320.077035 eV Total energy + Delta-G solvation = -3530.417796 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.41596 -39.15100 -37.73248 -35.57110 -33.92122 -32.67258 -31.97084 -31.09792 -29.14547 -27.11772 -26.34719 -26.28342 -24.35459 -23.64898 -22.73307 -22.16318 -21.62965 -20.79424 -18.11988 -17.66698 -16.74915 -16.71540 -16.21610 -15.67579 -15.51678 -15.05505 -14.75802 -14.53206 -14.17208 -14.03167 -13.68936 -13.55601 -13.04189 -12.92792 -12.67116 -12.51713 -12.05389 -11.93500 -11.66633 -11.61236 -11.33148 -11.24596 -10.95992 -10.86217 -10.78067 -10.68145 -10.47236 -10.24777 -10.12977 -9.67469 -9.61957 -9.11604 -9.02157 -8.83503 -8.43561 -8.29832 -8.10940 -5.94637 -3.94697 0.65852 1.23946 1.57442 2.49842 2.60771 3.35827 3.40459 3.42739 3.62456 3.96138 4.45254 4.50066 4.61005 4.74457 4.75876 4.83035 4.99956 5.24364 5.33188 5.39761 5.41198 5.52258 5.64343 5.68800 5.74165 5.78633 5.83962 5.94221 6.00387 6.14804 6.25300 6.27544 6.33940 6.34947 6.38011 6.52878 6.66314 6.76590 6.80270 6.83974 7.19663 7.22224 7.26711 7.37483 7.56091 7.65672 7.72270 7.87294 8.05705 8.50058 9.10491 9.68002 11.16973 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.003116 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.349403 B = 8984.173355 C =10131.991499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.057 4.057 3 C -0.129 4.129 4 C 0.035 3.965 5 C -0.507 4.507 6 H 0.058 0.942 7 C 0.055 3.945 8 N -0.898 5.898 9 Si 0.887 3.113 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.278 1.278 13 C 0.069 3.931 14 N -0.681 5.681 15 C 0.137 3.863 16 C 0.015 3.985 17 N -0.479 5.479 18 C 0.166 3.834 19 O -0.200 6.200 20 C 0.009 3.991 21 C -0.024 4.024 22 C -0.098 4.098 23 C -0.127 4.127 24 C -0.107 4.107 25 C -0.118 4.118 26 C -0.078 4.078 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.040 0.960 30 H 0.040 0.960 31 H 0.063 0.937 32 H 0.033 0.967 33 H 0.013 0.987 34 H 0.015 0.985 35 H 0.259 0.741 36 H 0.026 0.974 37 H 0.068 0.932 38 H 0.344 0.656 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.249 0.751 42 H 0.122 0.878 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.132 0.868 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.883 -0.202 22.901 23.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.058 4.058 3 C -0.186 4.186 4 C -0.003 4.003 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.145 4.145 8 N -0.538 5.538 9 Si 0.715 3.285 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.203 1.203 13 C -0.059 4.059 14 N -0.314 5.314 15 C 0.007 3.993 16 C -0.106 4.106 17 N -0.207 5.207 18 C -0.059 4.059 19 O -0.087 6.087 20 C -0.044 4.044 21 C -0.024 4.024 22 C -0.116 4.116 23 C -0.145 4.145 24 C -0.125 4.125 25 C -0.136 4.136 26 C -0.096 4.096 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.082 0.918 32 H 0.052 0.948 33 H 0.031 0.969 34 H 0.033 0.967 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.086 0.914 38 H 0.164 0.836 39 H 0.064 0.936 40 H 0.105 0.895 41 H 0.265 0.735 42 H 0.140 0.860 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.150 0.850 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.877 -0.328 22.609 23.634 hybrid contribution 0.209 0.513 -0.526 0.764 sum -6.668 0.185 22.083 23.068 Atomic orbital electron populations 1.21606 0.95061 1.00519 1.00161 1.20624 0.95798 0.95030 0.94308 1.21768 0.99780 0.96716 1.00380 1.19112 0.95915 0.95150 0.90092 1.21200 1.30777 1.11937 0.90627 0.92365 1.25009 0.95408 0.95115 0.99016 1.69959 1.37212 1.23221 1.23374 0.86736 0.79191 0.79792 0.82733 1.20372 1.21462 1.20322 1.22148 0.96679 0.98096 0.88981 1.60645 1.63329 1.06960 1.00479 1.20184 0.97474 0.96515 0.85129 1.21685 0.93809 0.95404 0.99660 1.70244 1.30029 1.12447 1.07997 1.27999 0.83346 0.96607 0.97966 1.84503 1.44489 1.34494 1.45193 1.21195 0.98525 0.93993 0.90722 1.17573 0.97589 0.92799 0.94466 1.21228 0.97117 0.94965 0.98281 1.21034 0.98210 0.98100 0.97163 1.21347 0.99217 0.99089 0.92895 1.21206 0.97607 0.95058 0.99727 1.21647 0.94575 0.97554 0.95837 0.94004 0.92681 0.94111 0.94053 0.91751 0.94834 0.96910 0.96666 0.93124 0.95554 0.91356 0.83608 0.93592 0.89511 0.73477 0.86017 0.85752 0.85771 0.85029 0.83142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 8.06 37.16 0.30 -1.88 16 2 C -0.06 -1.12 0.60 -154.51 -0.09 -1.21 16 3 C -0.13 -2.42 7.89 37.16 0.29 -2.13 16 4 C 0.03 0.87 4.04 -27.88 -0.11 0.75 16 5 C -0.51 -13.78 7.65 -34.44 -0.26 -14.05 16 6 H 0.06 1.54 5.68 -52.48 -0.30 1.24 16 7 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 8 N -0.90 -26.77 13.29 55.43 0.74 -26.04 16 9 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 13 C 0.07 1.17 4.65 -3.83 -0.02 1.15 16 14 N -0.68 -9.95 4.92 -115.06 -0.57 -10.52 16 15 C 0.14 1.84 5.36 -4.98 -0.03 1.81 16 16 C 0.02 0.21 6.63 -82.47 -0.55 -0.34 16 17 N -0.48 -6.27 11.27 -10.90 -0.12 -6.39 16 18 C 0.17 1.65 13.22 52.14 0.69 2.34 16 19 O -0.20 -2.32 10.79 4.23 0.05 -2.28 16 20 C 0.01 0.12 6.79 -36.54 -0.25 -0.13 16 21 C -0.02 -0.28 5.49 -104.98 -0.58 -0.86 16 22 C -0.10 -0.99 9.79 -39.18 -0.38 -1.38 16 23 C -0.13 -1.12 10.03 -39.64 -0.40 -1.52 16 24 C -0.11 -0.97 10.04 -39.50 -0.40 -1.37 16 25 C -0.12 -1.23 10.03 -39.64 -0.40 -1.63 16 26 C -0.08 -0.94 8.65 -39.18 -0.34 -1.27 16 27 H 0.04 0.70 7.60 -51.93 -0.39 0.31 16 28 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 29 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 31 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 32 H 0.03 0.55 6.57 -51.93 -0.34 0.21 16 33 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.01 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.26 7.36 8.31 -40.82 -0.34 7.03 16 36 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 38 H 0.34 5.23 6.76 -39.29 -0.27 4.96 16 39 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 40 H 0.09 1.13 7.27 -51.93 -0.38 0.75 16 41 H 0.25 1.12 8.06 -52.49 -0.42 0.70 16 42 H 0.12 1.08 8.06 -52.48 -0.42 0.65 16 43 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 44 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 45 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 46 H 0.15 1.99 6.94 -52.49 -0.36 1.62 16 LS Contribution 375.15 15.07 5.65 5.65 Total: -1.00 -31.18 375.15 -8.83 -40.01 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -6.94 Total: 3.25 kcal Atomic # 6 Polarization: -17.63 SS G_CDS: -2.61 Total: -20.25 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: 0.05 Total: -42.94 kcal Atomic # 8 Polarization: -2.32 SS G_CDS: 0.05 Total: -2.28 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -31.18 -8.83 -40.01 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370558265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.949 kcal (2) G-P(sol) polarization free energy of solvation -31.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.009 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds