Wall clock time and date at job start Tue Mar 31 2020 10:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47221 * 2 1 4 4 C 1.53009 * 109.47071 * 239.99664 * 2 1 3 5 5 C 1.50694 * 109.46838 * 60.00627 * 4 2 1 6 6 H 1.08004 * 120.00541 * 359.97438 * 5 4 2 7 7 C 1.37877 * 119.99923 * 179.97438 * 5 4 2 8 8 N 1.31519 * 119.99918 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00206 * 179.97438 * 7 5 4 10 10 H 1.48492 * 109.47223 * 59.99953 * 9 7 5 11 11 H 1.48505 * 109.47036 * 180.02562 * 9 7 5 12 12 H 1.48508 * 109.47096 * 299.99746 * 9 7 5 13 13 C 1.52999 * 109.47018 * 120.00150 * 2 1 3 14 14 N 1.46897 * 109.47102 * 300.00022 * 13 2 1 15 15 C 1.46894 * 111.00413 * 180.02562 * 14 13 2 16 16 C 1.50703 * 109.47549 * 179.97438 * 15 14 13 17 17 N 1.34140 * 126.24440 * 275.55958 * 16 15 14 18 18 C 1.30360 * 108.90605 * 180.26605 * 17 16 15 19 19 O 1.34003 * 109.03161 * 359.73285 * 18 17 16 20 20 C 1.35113 * 107.71259 * 359.97438 * 19 18 17 21 21 C 1.47828 * 126.58140 * 180.02562 * 20 19 18 22 22 C 1.39577 * 120.14734 * 312.98907 * 21 20 19 23 23 C 1.37957 * 119.85407 * 179.97438 * 22 21 20 24 24 C 1.38358 * 120.14445 * 359.97438 * 23 22 21 25 25 C 1.38345 * 120.29417 * 359.97438 * 24 23 22 26 26 C 1.37959 * 120.14708 * 0.02562 * 25 24 23 27 27 H 1.08992 * 109.47338 * 300.00081 * 1 2 3 28 28 H 1.09003 * 109.47022 * 60.00365 * 1 2 3 29 29 H 1.09003 * 109.47206 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.46725 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46824 * 299.99755 * 3 2 1 32 32 H 1.08992 * 109.47031 * 59.99731 * 3 2 1 33 33 H 1.09007 * 109.46825 * 180.02562 * 4 2 1 34 34 H 1.08997 * 109.47293 * 299.99823 * 4 2 1 35 35 H 0.97004 * 119.99726 * 180.02562 * 8 7 5 36 36 H 1.09007 * 109.47362 * 180.02562 * 13 2 1 37 37 H 1.09007 * 109.47450 * 59.99896 * 13 2 1 38 38 H 1.00905 * 111.00169 * 303.95347 * 14 13 2 39 39 H 1.09003 * 109.47082 * 59.99899 * 15 14 13 40 40 H 1.08996 * 109.46995 * 299.99868 * 15 14 13 41 41 H 1.07997 * 125.48090 * 179.72768 * 18 17 16 42 42 H 1.08004 * 120.06813 * 359.97438 * 22 21 20 43 43 H 1.08002 * 119.92612 * 179.72454 * 23 22 21 44 44 H 1.08000 * 119.84932 * 179.97438 * 24 23 22 45 45 H 1.08002 * 119.92750 * 180.02562 * 25 24 23 46 46 H 1.08001 * 120.07773 * 180.02562 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2493 5 6 1.5378 -0.0109 -2.4797 6 1 0.9166 0.8670 -2.3807 7 6 1.8713 -0.4817 -3.7319 8 7 2.6281 -1.5505 -3.8526 9 14 1.2482 0.3985 -5.2572 10 1 1.7422 1.7988 -5.2571 11 1 1.7433 -0.3016 -6.4697 12 1 -0.2369 0.3974 -5.2574 13 6 2.0399 -0.7213 1.2492 14 7 1.5503 -0.0288 2.4486 15 6 2.0217 -0.6945 3.6703 16 6 1.5011 0.0428 4.8771 17 7 2.0578 1.1209 5.4489 18 6 1.3327 1.4785 6.4716 19 8 0.2894 0.6446 6.5804 20 6 0.3807 -0.2606 5.5815 21 6 -0.5559 -1.3719 5.3113 22 6 -0.9797 -2.2001 6.3518 23 6 -1.8543 -3.2352 6.0930 24 6 -2.3117 -3.4528 4.8054 25 6 -1.8963 -2.6350 3.7697 26 6 -1.0220 -1.5964 4.0149 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 3.1300 1.4424 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6767 1.9563 0.8899 33 1 3.1301 -0.7217 -1.2490 34 1 1.6767 -1.7490 -1.2492 35 1 2.8630 -1.8815 -4.7336 36 1 3.1300 -0.7209 1.2495 37 1 1.6766 -1.7490 1.2493 38 1 1.8197 0.9435 2.4402 39 1 3.1116 -0.6940 3.6869 40 1 1.6586 -1.7221 3.6873 41 1 1.5396 2.3125 7.1258 42 1 -0.6238 -2.0309 7.3574 43 1 -2.1795 -3.8794 6.8964 44 1 -2.9959 -4.2648 4.6081 45 1 -2.2574 -2.8100 2.7670 46 1 -0.6988 -0.9584 3.2057 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000370558265.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:55:28 Heat of formation + Delta-G solvation = 14.715181 kcal Electronic energy + Delta-G solvation = -25851.328516 eV Core-core repulsion = 22320.077035 eV Total energy + Delta-G solvation = -3531.251481 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.28815 -39.91652 -39.23012 -36.73797 -35.21470 -34.19062 -33.26614 -31.85443 -30.16259 -28.95532 -27.89532 -27.59529 -25.90939 -24.43978 -23.99426 -23.41457 -22.52741 -21.69545 -19.59785 -18.64116 -18.30884 -17.64462 -17.53793 -16.69683 -16.60205 -16.44050 -15.94452 -15.64845 -15.53706 -15.24228 -14.70254 -14.60131 -14.32461 -14.26942 -13.94606 -13.83390 -13.64283 -13.30171 -13.12201 -12.74959 -12.71460 -12.44097 -12.34326 -12.28673 -12.23230 -12.11742 -12.00492 -11.91559 -11.57622 -11.37068 -10.86190 -10.76630 -10.48197 -10.43877 -9.88165 -9.44784 -9.20612 -8.12336 -6.19078 -0.15252 0.47718 0.75615 1.41826 1.43803 1.51058 1.60583 1.79442 2.45002 2.85492 3.13953 3.21606 3.46177 3.66763 3.73195 4.02661 4.10440 4.15409 4.21521 4.29042 4.37115 4.45007 4.50917 4.55450 4.61972 4.75389 4.77213 4.82043 4.85339 4.96191 5.01767 5.08314 5.16637 5.21303 5.22902 5.32328 5.51296 5.53020 5.54554 5.56180 5.59921 5.61746 5.65521 5.88184 5.93874 5.98741 6.02257 6.37156 6.39375 6.70611 6.95756 7.48044 8.99765 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016300 B = 0.003116 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.349403 B = 8984.173355 C =10131.991499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.053 4.053 3 C -0.122 4.122 4 C 0.042 3.958 5 C -0.514 4.514 6 H 0.065 0.935 7 C -0.003 4.003 8 N -0.937 5.937 9 Si 0.954 3.046 10 H -0.269 1.269 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.083 3.917 14 N -0.671 5.671 15 C 0.144 3.856 16 C -0.003 4.003 17 N -0.514 5.514 18 C 0.187 3.813 19 O -0.205 6.205 20 C 0.004 3.996 21 C -0.041 4.041 22 C -0.103 4.103 23 C -0.123 4.123 24 C -0.106 4.106 25 C -0.129 4.129 26 C -0.094 4.094 27 H 0.063 0.937 28 H 0.037 0.963 29 H 0.036 0.964 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.061 0.939 33 H -0.017 1.017 34 H -0.012 1.012 35 H 0.259 0.741 36 H 0.018 0.982 37 H 0.065 0.935 38 H 0.343 0.657 39 H 0.041 0.959 40 H 0.088 0.912 41 H 0.298 0.702 42 H 0.133 0.867 43 H 0.154 0.846 44 H 0.150 0.850 45 H 0.137 0.863 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.399 0.560 24.746 26.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.053 4.053 3 C -0.179 4.179 4 C 0.004 3.996 5 C -0.553 4.553 6 H 0.083 0.917 7 C -0.200 4.200 8 N -0.579 5.579 9 Si 0.780 3.220 10 H -0.194 1.194 11 H -0.214 1.214 12 H -0.193 1.193 13 C -0.046 4.046 14 N -0.303 5.303 15 C 0.014 3.986 16 C -0.123 4.123 17 N -0.243 5.243 18 C -0.038 4.038 19 O -0.092 6.092 20 C -0.050 4.050 21 C -0.042 4.042 22 C -0.121 4.121 23 C -0.141 4.141 24 C -0.123 4.123 25 C -0.147 4.147 26 C -0.113 4.113 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.066 0.934 32 H 0.080 0.920 33 H 0.001 0.999 34 H 0.006 0.994 35 H 0.068 0.932 36 H 0.037 0.963 37 H 0.084 0.916 38 H 0.163 0.837 39 H 0.059 0.941 40 H 0.106 0.894 41 H 0.313 0.687 42 H 0.151 0.849 43 H 0.171 0.829 44 H 0.168 0.832 45 H 0.155 0.845 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -8.398 0.442 24.460 25.865 hybrid contribution 0.677 0.265 -0.991 1.229 sum -7.721 0.707 23.469 24.716 Atomic orbital electron populations 1.21491 0.94069 1.00397 1.00333 1.20475 0.96456 0.95284 0.93100 1.21676 0.99385 0.95948 1.00901 1.18982 0.93901 0.94211 0.92463 1.21587 1.30236 1.11953 0.91480 0.91696 1.25892 0.95712 0.95889 1.02474 1.70102 1.38772 1.24935 1.24057 0.85663 0.78983 0.78753 0.78636 1.19449 1.21370 1.19268 1.21858 0.96029 0.97791 0.88929 1.60571 1.62996 1.06636 1.00082 1.20076 0.97066 0.96630 0.84804 1.21576 0.94551 0.96180 0.99952 1.70225 1.31374 1.13047 1.09624 1.29118 0.81588 0.96174 0.96962 1.84524 1.45088 1.34598 1.44944 1.21327 0.98429 0.94395 0.90865 1.17697 0.98230 0.93338 0.94935 1.21446 0.97257 0.95015 0.98390 1.21398 0.97104 0.97672 0.97922 1.21674 0.98992 0.99112 0.92567 1.21376 0.97559 0.95091 1.00671 1.21556 0.95811 0.98300 0.95588 0.91761 0.94345 0.94437 0.94622 0.93371 0.92034 0.99890 0.99378 0.93180 0.96343 0.91613 0.83742 0.94124 0.89381 0.68733 0.84871 0.82855 0.83225 0.84490 0.84914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.95 8.06 71.98 0.58 -3.37 16 2 C -0.05 -2.10 0.60 -52.18 -0.03 -2.13 16 3 C -0.12 -4.54 7.89 71.98 0.57 -3.97 16 4 C 0.04 2.17 4.04 29.85 0.12 2.29 16 5 C -0.51 -28.48 7.65 25.60 0.20 -28.29 16 6 H 0.06 3.45 5.68 -2.91 -0.02 3.43 16 7 C 0.00 -0.17 5.46 84.65 0.46 0.30 16 8 N -0.94 -57.38 13.29 21.45 0.28 -57.09 16 9 Si 0.95 44.55 29.54 68.60 2.03 46.58 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 12 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 13 C 0.08 2.84 4.65 86.30 0.40 3.25 16 14 N -0.67 -19.48 4.92 -517.93 -2.55 -22.03 16 15 C 0.14 3.89 5.36 85.56 0.46 4.35 16 16 C 0.00 -0.07 6.63 41.63 0.28 0.21 16 17 N -0.51 -12.82 11.27 -303.11 -3.42 -16.23 16 18 C 0.19 3.26 13.22 130.46 1.72 4.98 16 19 O -0.20 -4.39 10.79 -7.77 -0.08 -4.47 16 20 C 0.00 0.09 6.79 24.24 0.16 0.25 16 21 C -0.04 -0.96 5.49 -20.09 -0.11 -1.07 16 22 C -0.10 -1.92 9.79 22.53 0.22 -1.70 16 23 C -0.12 -1.86 10.03 22.23 0.22 -1.64 16 24 C -0.11 -1.68 10.04 22.32 0.22 -1.45 16 25 C -0.13 -2.59 10.03 22.23 0.22 -2.36 16 26 C -0.09 -2.24 8.65 22.53 0.19 -2.05 16 27 H 0.06 2.10 7.60 -2.39 -0.02 2.09 16 28 H 0.04 1.54 6.62 -2.39 -0.02 1.53 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.38 16 30 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 31 H 0.05 1.94 6.62 -2.39 -0.02 1.92 16 32 H 0.06 1.94 6.57 -2.39 -0.02 1.92 16 33 H -0.02 -0.99 8.14 -2.38 -0.02 -1.01 16 34 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 35 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 36 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.07 2.29 8.14 -2.38 -0.02 2.27 16 38 H 0.34 10.16 6.76 -89.69 -0.61 9.56 16 39 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.09 2.33 7.27 -2.39 -0.02 2.32 16 41 H 0.30 1.52 8.06 -2.91 -0.02 1.49 16 42 H 0.13 2.09 8.06 -2.91 -0.02 2.07 16 43 H 0.15 1.39 8.06 -2.91 -0.02 1.37 16 44 H 0.15 1.56 8.06 -2.91 -0.02 1.54 16 45 H 0.14 2.48 8.06 -2.91 -0.02 2.45 16 46 H 0.13 3.56 6.94 -2.91 -0.02 3.54 16 Total: -1.00 -68.96 375.15 2.53 -66.44 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.37 Total: 19.22 kcal Atomic # 6 Polarization: -38.30 SS G_CDS: 5.89 Total: -32.40 kcal Atomic # 7 Polarization: -89.67 SS G_CDS: -5.68 Total: -95.35 kcal Atomic # 8 Polarization: -4.39 SS G_CDS: -0.08 Total: -4.47 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Total: -68.96 2.53 -66.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000370558265.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.152 kcal (2) G-P(sol) polarization free energy of solvation -68.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds