Wall clock time and date at job start Tue Mar 31 2020 10:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35848 * 117.00030 * 2 1 4 4 C 1.37794 * 120.36750 * 0.02562 * 3 2 1 5 5 C 1.39153 * 120.76103 * 179.97438 * 4 3 2 6 6 C 1.36319 * 121.10481 * 0.02562 * 5 4 3 7 7 C 1.40088 * 119.79289 * 359.76557 * 6 5 4 8 8 C 1.41328 * 121.96648 * 179.68335 * 7 6 5 9 9 N 1.38489 * 120.13787 * 0.52452 * 8 7 6 10 10 C 1.46499 * 119.99757 * 179.44993 * 9 8 7 11 11 C 1.53004 * 109.47198 * 180.27632 * 10 9 8 12 12 C 1.52998 * 109.46876 * 299.99984 * 11 10 9 13 13 C 1.53005 * 109.46795 * 60.00011 * 11 10 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 11 10 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48502 * 109.47342 * 239.99982 * 19 17 15 23 23 N 1.31899 * 119.72076 * 180.24824 * 8 7 6 24 24 C 1.32696 * 122.63983 * 0.27960 * 23 8 7 25 25 C 1.36057 * 121.96521 * 359.97438 * 24 23 8 26 26 C 1.40604 * 120.36677 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46714 * 60.00403 * 1 2 3 28 28 H 1.08999 * 109.46715 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46968 * 300.00321 * 1 2 3 30 30 H 1.08003 * 119.62064 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.45109 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.10376 * 180.02562 * 6 5 4 33 33 H 0.97001 * 120.00393 * 359.73046 * 9 8 7 34 34 H 1.09009 * 109.47454 * 300.27402 * 10 9 8 35 35 H 1.08998 * 109.47492 * 60.27696 * 10 9 8 36 36 H 1.08996 * 109.47009 * 60.00253 * 12 11 10 37 37 H 1.09004 * 109.46783 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47156 * 300.00070 * 12 11 10 39 39 H 1.09000 * 109.47011 * 60.00556 * 13 11 10 40 40 H 1.09004 * 109.46658 * 180.02562 * 13 11 10 41 41 H 1.08996 * 109.47069 * 299.99740 * 13 11 10 42 42 H 1.08995 * 109.47672 * 299.99669 * 14 11 10 43 43 H 1.09007 * 109.47288 * 60.00489 * 14 11 10 44 44 H 0.97000 * 120.00572 * 179.97438 * 18 17 15 45 45 H 1.08002 * 119.01671 * 179.97438 * 24 23 8 46 46 H 1.08000 * 120.56673 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.3027 2.3708 0.0005 5 6 1.9259 3.6150 0.0011 6 6 3.2849 3.7219 0.0006 7 6 4.0742 2.5645 0.0045 8 6 5.4863 2.6218 -0.0025 9 7 6.1325 3.8467 -0.0026 10 6 7.5964 3.9025 0.0024 11 6 8.0511 5.3634 0.0082 12 6 7.5181 6.0683 -1.2408 13 6 7.5099 6.0610 1.2578 14 6 9.5800 5.4216 0.0140 15 6 10.0278 6.8606 0.0190 16 1 9.2953 7.6541 0.0186 17 6 11.3728 7.1640 0.0242 18 7 12.2649 6.1977 0.0242 19 14 11.9279 8.9476 0.0312 20 1 10.7381 9.8363 0.0306 21 1 12.7395 9.2086 1.2471 22 1 12.7473 9.2158 -1.1779 23 7 6.1861 1.5038 -0.0034 24 6 5.6187 0.3043 -0.0035 25 6 4.2672 0.1467 -0.0020 26 6 3.4494 1.2930 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2242 2.3141 0.0005 31 1 1.3229 4.5110 0.0019 32 1 3.7517 4.6959 0.0014 33 1 5.6159 4.6677 -0.0018 34 1 7.9762 3.4003 0.8922 35 1 7.9820 3.4055 -0.8878 36 1 6.4289 6.0268 -1.2444 37 1 7.8417 7.1092 -1.2364 38 1 7.9036 5.5713 -2.1309 39 1 7.8897 5.5588 2.1475 40 1 7.8335 7.1019 1.2616 41 1 6.4207 6.0195 1.2540 42 1 9.9594 4.9196 0.9039 43 1 9.9659 4.9245 -0.8761 44 1 13.2111 6.4111 0.0275 45 1 6.2484 -0.5732 -0.0046 46 1 3.8294 -0.8405 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000450528769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:37 Heat of formation + Delta-G solvation = 6.100102 kcal Electronic energy + Delta-G solvation = -25649.770291 eV Core-core repulsion = 22118.145231 eV Total energy + Delta-G solvation = -3531.625059 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.08571 -39.29323 -37.66025 -36.59770 -34.63694 -32.40533 -31.57003 -30.56164 -28.92049 -27.65954 -27.01516 -26.50569 -25.96198 -23.76162 -23.53626 -22.50149 -21.28187 -18.84174 -18.30336 -17.87525 -16.84373 -16.40451 -16.16370 -16.06310 -15.87361 -14.83564 -14.74403 -14.66969 -14.50661 -13.91765 -13.75345 -13.40986 -13.21039 -12.89710 -12.72123 -12.66540 -12.46772 -12.11581 -12.06147 -11.85099 -11.35560 -11.23701 -11.17309 -11.03036 -10.82792 -10.65714 -10.38625 -10.23452 -10.22437 -9.79317 -9.32508 -9.25555 -9.11667 -8.90682 -8.56622 -8.35624 -7.10234 -5.99493 -4.00541 0.59222 0.88073 2.03131 2.87795 3.08709 3.30365 3.38195 3.39899 3.42969 4.17921 4.45326 4.49408 4.55533 4.71907 4.77611 4.80644 4.83372 4.91777 5.11371 5.17830 5.36147 5.37639 5.44277 5.55201 5.65605 5.72310 5.77260 5.84558 5.97857 6.18388 6.22576 6.26246 6.29407 6.30982 6.42020 6.42941 6.59141 6.63662 6.71953 7.04481 7.08275 7.10517 7.12966 7.36293 7.55067 7.65491 7.77658 7.99516 8.41469 8.44864 9.04428 9.62537 11.11961 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.031176 B = 0.002591 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.912888 B =10805.956196 C =11502.175140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.310 6.310 3 C 0.122 3.878 4 C -0.195 4.195 5 C -0.103 4.103 6 C -0.110 4.110 7 C -0.119 4.119 8 C 0.439 3.561 9 N -0.699 5.699 10 C 0.139 3.861 11 C -0.074 4.074 12 C -0.127 4.127 13 C -0.127 4.127 14 C 0.037 3.963 15 C -0.510 4.510 16 H 0.059 0.941 17 C 0.055 3.945 18 N -0.894 5.894 19 Si 0.888 3.112 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.285 1.285 23 N -0.555 5.555 24 C 0.139 3.861 25 C -0.225 4.225 26 C 0.001 3.999 27 H 0.055 0.945 28 H 0.100 0.900 29 H 0.055 0.945 30 H 0.127 0.873 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.406 0.594 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.027 0.973 37 H 0.067 0.933 38 H 0.048 0.952 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.027 0.973 42 H 0.019 0.981 43 H 0.019 0.981 44 H 0.259 0.741 45 H 0.150 0.850 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.051 -9.848 -0.062 25.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.223 6.223 3 C 0.076 3.924 4 C -0.215 4.215 5 C -0.121 4.121 6 C -0.130 4.130 7 C -0.125 4.125 8 C 0.190 3.810 9 N -0.330 5.330 10 C 0.016 3.984 11 C -0.074 4.074 12 C -0.184 4.184 13 C -0.184 4.184 14 C -0.001 4.001 15 C -0.548 4.548 16 H 0.078 0.922 17 C -0.146 4.146 18 N -0.534 5.534 19 Si 0.716 3.284 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.276 5.276 24 C -0.007 4.007 25 C -0.249 4.249 26 C -0.005 4.005 27 H 0.074 0.926 28 H 0.119 0.881 29 H 0.074 0.926 30 H 0.145 0.855 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.245 0.755 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.046 0.954 37 H 0.086 0.914 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.086 0.914 41 H 0.046 0.954 42 H 0.037 0.963 43 H 0.037 0.963 44 H 0.069 0.931 45 H 0.167 0.833 46 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -22.644 -10.104 -0.064 24.796 hybrid contribution -0.957 1.317 0.009 1.628 sum -23.600 -8.787 -0.055 25.183 Atomic orbital electron populations 1.23073 0.78336 1.03993 1.01387 1.86033 1.21237 1.26555 1.88445 1.18726 0.91049 0.84481 0.98096 1.21128 0.99888 0.92161 1.08362 1.20446 0.94384 0.96843 1.00463 1.20672 0.93906 0.97092 1.01311 1.18204 0.92870 0.93429 1.07986 1.18501 0.86359 0.87479 0.88671 1.44933 1.08032 1.03520 1.76511 1.21626 0.76854 0.98015 1.01922 1.20932 1.00402 0.91138 0.94949 1.21762 0.97217 1.02054 0.97399 1.21765 0.97190 1.02083 0.97400 1.19085 0.86088 0.97392 0.97523 1.21219 0.91375 0.92126 1.50085 0.92248 1.25015 0.97049 0.96887 0.95605 1.69971 1.01050 1.31353 1.50976 0.86599 0.78707 0.85526 0.77518 1.19830 1.21150 1.21144 1.67125 1.39950 0.97231 1.23273 1.21823 0.92424 0.93721 0.92765 1.21323 0.94434 0.98128 1.11022 1.17199 0.90201 0.93163 0.99925 0.92605 0.88144 0.92612 0.85484 0.85682 0.85748 0.75515 0.91742 0.91731 0.95429 0.91439 0.93299 0.93303 0.91437 0.95434 0.96295 0.96296 0.93109 0.83272 0.84924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.82 101.05 0.99 1.15 16 2 O -0.31 -3.23 9.83 -19.26 -0.19 -3.42 16 3 C 0.12 1.44 6.70 -38.85 -0.26 1.18 16 4 C -0.20 -1.94 9.04 -39.40 -0.36 -2.30 16 5 C -0.10 -1.02 9.94 -39.93 -0.40 -1.42 16 6 C -0.11 -1.28 9.51 -39.58 -0.38 -1.65 16 7 C -0.12 -1.67 5.75 -106.72 -0.61 -2.28 16 8 C 0.44 6.83 7.53 -155.10 -1.17 5.67 16 9 N -0.70 -10.53 5.04 -60.06 -0.30 -10.84 16 10 C 0.14 2.44 4.59 -4.04 -0.02 2.42 16 11 C -0.07 -1.40 0.54 -154.51 -0.08 -1.48 16 12 C -0.13 -2.24 8.05 37.16 0.30 -1.95 16 13 C -0.13 -2.25 8.05 37.16 0.30 -1.95 16 14 C 0.04 0.89 4.04 -27.88 -0.11 0.78 16 15 C -0.51 -13.50 7.65 -34.44 -0.26 -13.76 16 16 H 0.06 1.52 5.68 -52.49 -0.30 1.22 16 17 C 0.06 1.54 5.46 -17.82 -0.10 1.44 16 18 N -0.89 -26.35 13.29 55.43 0.74 -25.62 16 19 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 20 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 N -0.55 -9.07 9.53 -12.43 -0.12 -9.19 16 24 C 0.14 1.91 11.06 -17.96 -0.20 1.71 16 25 C -0.23 -2.95 9.64 -39.39 -0.38 -3.33 16 26 C 0.00 0.01 5.75 -106.72 -0.61 -0.61 16 27 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 28 H 0.10 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.28 7.67 -51.93 -0.40 -0.12 16 30 H 0.13 0.91 6.27 -52.48 -0.33 0.58 16 31 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 32 H 0.12 1.25 6.49 -52.49 -0.34 0.91 16 33 H 0.41 5.40 4.31 -40.82 -0.18 5.23 16 34 H 0.06 1.21 8.14 -51.92 -0.42 0.78 16 35 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 36 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 37 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 38 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 39 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 40 H 0.07 1.28 6.62 -51.93 -0.34 0.94 16 41 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 42 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 43 H 0.02 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 45 H 0.15 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.13 1.50 7.72 -52.49 -0.41 1.09 16 LS Contribution 365.85 15.07 5.51 5.51 Total: -1.00 -31.09 365.85 -9.42 -40.50 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -6.69 Total: 3.22 kcal Atomic # 6 Polarization: -13.01 SS G_CDS: -3.35 Total: -16.36 kcal Atomic # 7 Polarization: -45.96 SS G_CDS: 0.32 Total: -45.64 kcal Atomic # 8 Polarization: -3.23 SS G_CDS: -0.19 Total: -3.42 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -31.09 -9.42 -40.50 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450528769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.605 kcal (2) G-P(sol) polarization free energy of solvation -31.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.505 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds