Wall clock time and date at job start Tue Mar 31 2020 10:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35848 * 117.00030 * 2 1 4 4 C 1.37794 * 120.36750 * 0.02562 * 3 2 1 5 5 C 1.39153 * 120.76103 * 179.97438 * 4 3 2 6 6 C 1.36319 * 121.10481 * 0.02562 * 5 4 3 7 7 C 1.40088 * 119.79289 * 359.76557 * 6 5 4 8 8 C 1.41328 * 121.96648 * 179.68335 * 7 6 5 9 9 N 1.38489 * 120.13787 * 0.52452 * 8 7 6 10 10 C 1.46499 * 119.99757 * 179.44993 * 9 8 7 11 11 C 1.53004 * 109.47198 * 180.27632 * 10 9 8 12 12 C 1.52998 * 109.46876 * 299.99984 * 11 10 9 13 13 C 1.53005 * 109.46795 * 60.00011 * 11 10 9 14 14 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 15 15 C 1.50703 * 109.46940 * 179.97438 * 14 11 10 16 16 H 1.08001 * 120.00043 * 0.02562 * 15 14 11 17 17 C 1.37875 * 120.00213 * 180.02562 * 15 14 11 18 18 N 1.31512 * 120.00116 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 120.00201 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47135 * 0.02562 * 19 17 15 21 21 H 1.48504 * 109.47080 * 119.99899 * 19 17 15 22 22 H 1.48502 * 109.47342 * 239.99982 * 19 17 15 23 23 N 1.31899 * 119.72076 * 180.24824 * 8 7 6 24 24 C 1.32696 * 122.63983 * 0.27960 * 23 8 7 25 25 C 1.36057 * 121.96521 * 359.97438 * 24 23 8 26 26 C 1.40604 * 120.36677 * 180.02562 * 3 2 1 27 27 H 1.09000 * 109.46714 * 60.00403 * 1 2 3 28 28 H 1.08999 * 109.46715 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.46968 * 300.00321 * 1 2 3 30 30 H 1.08003 * 119.62064 * 359.97438 * 4 3 2 31 31 H 1.07998 * 119.45109 * 180.02562 * 5 4 3 32 32 H 1.08001 * 120.10376 * 180.02562 * 6 5 4 33 33 H 0.97001 * 120.00393 * 359.73046 * 9 8 7 34 34 H 1.09009 * 109.47454 * 300.27402 * 10 9 8 35 35 H 1.08998 * 109.47492 * 60.27696 * 10 9 8 36 36 H 1.08996 * 109.47009 * 60.00253 * 12 11 10 37 37 H 1.09004 * 109.46783 * 179.97438 * 12 11 10 38 38 H 1.08998 * 109.47156 * 300.00070 * 12 11 10 39 39 H 1.09000 * 109.47011 * 60.00556 * 13 11 10 40 40 H 1.09004 * 109.46658 * 180.02562 * 13 11 10 41 41 H 1.08996 * 109.47069 * 299.99740 * 13 11 10 42 42 H 1.08995 * 109.47672 * 299.99669 * 14 11 10 43 43 H 1.09007 * 109.47288 * 60.00489 * 14 11 10 44 44 H 0.97000 * 120.00572 * 179.97438 * 18 17 15 45 45 H 1.08002 * 119.01671 * 179.97438 * 24 23 8 46 46 H 1.08000 * 120.56673 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 6 1.3027 2.3708 0.0005 5 6 1.9259 3.6150 0.0011 6 6 3.2849 3.7219 0.0006 7 6 4.0742 2.5645 0.0045 8 6 5.4863 2.6218 -0.0025 9 7 6.1325 3.8467 -0.0026 10 6 7.5964 3.9025 0.0024 11 6 8.0511 5.3634 0.0082 12 6 7.5181 6.0683 -1.2408 13 6 7.5099 6.0610 1.2578 14 6 9.5800 5.4216 0.0140 15 6 10.0278 6.8606 0.0190 16 1 9.2953 7.6541 0.0186 17 6 11.3728 7.1640 0.0242 18 7 12.2649 6.1977 0.0242 19 14 11.9279 8.9476 0.0312 20 1 10.7381 9.8363 0.0306 21 1 12.7395 9.2086 1.2471 22 1 12.7473 9.2158 -1.1779 23 7 6.1861 1.5038 -0.0034 24 6 5.6187 0.3043 -0.0035 25 6 4.2672 0.1467 -0.0020 26 6 3.4494 1.2930 -0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8899 30 1 0.2242 2.3141 0.0005 31 1 1.3229 4.5110 0.0019 32 1 3.7517 4.6959 0.0014 33 1 5.6159 4.6677 -0.0018 34 1 7.9762 3.4003 0.8922 35 1 7.9820 3.4055 -0.8878 36 1 6.4289 6.0268 -1.2444 37 1 7.8417 7.1092 -1.2364 38 1 7.9036 5.5713 -2.1309 39 1 7.8897 5.5588 2.1475 40 1 7.8335 7.1019 1.2616 41 1 6.4207 6.0195 1.2540 42 1 9.9594 4.9196 0.9039 43 1 9.9659 4.9245 -0.8761 44 1 13.2111 6.4111 0.0275 45 1 6.2484 -0.5732 -0.0046 46 1 3.8294 -0.8405 -0.0017 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000450528769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:36 Heat of formation + Delta-G solvation = -10.767374 kcal Electronic energy + Delta-G solvation = -25650.501719 eV Core-core repulsion = 22118.145231 eV Total energy + Delta-G solvation = -3532.356488 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.01450 -40.19216 -39.06338 -37.47743 -35.99696 -34.32650 -32.56735 -31.57871 -29.94490 -28.89951 -28.21057 -27.96475 -27.35878 -25.06421 -24.69048 -23.83654 -22.28241 -20.06946 -19.27805 -19.06770 -18.36057 -17.75017 -17.15236 -17.01864 -16.72285 -16.45017 -16.00473 -15.68747 -15.50322 -15.19892 -15.06772 -14.75539 -14.31295 -14.24753 -13.98396 -13.93731 -13.73269 -13.18337 -13.16932 -12.88509 -12.68663 -12.61428 -12.59959 -12.34459 -12.20597 -12.07562 -11.94648 -11.91587 -11.62119 -11.18997 -11.01516 -10.82713 -10.50929 -10.30080 -10.20942 -9.51927 -8.12971 -8.12860 -6.20351 -0.33497 -0.04970 1.06052 1.42048 1.43077 1.54772 2.06907 2.19167 2.38027 2.46196 3.17178 3.21551 3.60931 3.69332 3.90486 3.94024 3.96756 4.06922 4.12266 4.25081 4.25330 4.42961 4.43083 4.50319 4.57148 4.71765 4.76698 4.76832 4.84196 4.87045 4.92204 4.97727 5.12211 5.13174 5.15410 5.36054 5.42120 5.45691 5.50570 5.51822 5.55597 5.59418 5.71107 5.81982 5.91249 6.15096 6.33166 6.40368 6.45765 6.94811 7.37420 7.47155 8.99803 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.031176 B = 0.002591 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 897.912888 B =10805.956196 C =11502.175140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.114 3.886 4 C -0.190 4.190 5 C -0.090 4.090 6 C -0.126 4.126 7 C -0.127 4.127 8 C 0.422 3.578 9 N -0.694 5.694 10 C 0.160 3.840 11 C -0.065 4.065 12 C -0.121 4.121 13 C -0.121 4.121 14 C 0.041 3.959 15 C -0.511 4.511 16 H 0.072 0.928 17 C -0.006 4.006 18 N -0.938 5.938 19 Si 0.958 3.042 20 H -0.257 1.257 21 H -0.285 1.285 22 H -0.284 1.284 23 N -0.588 5.588 24 C 0.114 3.886 25 C -0.215 4.215 26 C -0.029 4.029 27 H 0.068 0.932 28 H 0.119 0.881 29 H 0.068 0.932 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.140 0.860 33 H 0.415 0.585 34 H 0.045 0.955 35 H 0.045 0.955 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.036 0.964 39 H 0.036 0.964 40 H 0.056 0.944 41 H 0.065 0.935 42 H -0.013 1.013 43 H -0.013 1.013 44 H 0.259 0.741 45 H 0.167 0.833 46 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.030 -8.477 -0.064 29.284 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.068 3.932 4 C -0.210 4.210 5 C -0.108 4.108 6 C -0.146 4.146 7 C -0.133 4.133 8 C 0.173 3.827 9 N -0.329 5.329 10 C 0.035 3.965 11 C -0.066 4.066 12 C -0.178 4.178 13 C -0.178 4.178 14 C 0.004 3.996 15 C -0.549 4.549 16 H 0.090 0.910 17 C -0.203 4.203 18 N -0.579 5.579 19 Si 0.784 3.216 20 H -0.181 1.181 21 H -0.211 1.211 22 H -0.211 1.211 23 N -0.309 5.309 24 C -0.031 4.031 25 C -0.239 4.239 26 C -0.035 4.035 27 H 0.086 0.914 28 H 0.137 0.863 29 H 0.086 0.914 30 H 0.177 0.823 31 H 0.177 0.823 32 H 0.158 0.842 33 H 0.256 0.744 34 H 0.063 0.937 35 H 0.063 0.937 36 H 0.084 0.916 37 H 0.075 0.925 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.005 0.995 43 H 0.005 0.995 44 H 0.068 0.932 45 H 0.184 0.816 46 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -26.677 -8.756 -0.066 28.077 hybrid contribution 0.076 0.749 0.010 0.753 sum -26.600 -8.006 -0.056 27.779 Atomic orbital electron populations 1.23407 0.75991 1.05780 1.02537 1.86012 1.23650 1.26147 1.88266 1.18819 0.90522 0.85731 0.98093 1.21549 1.01519 0.91428 1.06464 1.20899 0.93987 0.98178 0.97770 1.20914 0.94708 0.96899 1.02115 1.18325 0.92137 0.94647 1.08159 1.18674 0.87326 0.87158 0.89557 1.44567 1.06432 1.04084 1.77773 1.21111 0.78788 0.96484 1.00093 1.20721 0.96522 0.92529 0.96795 1.21682 0.99553 1.00703 0.95871 1.21685 0.99520 1.00735 0.95874 1.18956 0.90245 0.96039 0.94402 1.21614 0.91654 0.93138 1.48515 0.91015 1.25950 0.97458 1.01335 0.95572 1.70126 1.01328 1.33785 1.52682 0.85494 0.78553 0.80320 0.77253 1.18086 1.21077 1.21064 1.67063 1.41399 0.98345 1.24130 1.22113 0.93295 0.93576 0.94070 1.21532 0.94163 0.98921 1.09240 1.17514 0.91654 0.93199 1.01087 0.91361 0.86285 0.91369 0.82284 0.82299 0.84230 0.74392 0.93712 0.93696 0.91624 0.92515 0.94435 0.94443 0.92513 0.91630 0.99511 0.99513 0.93203 0.81608 0.83527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.15 9.82 113.37 1.11 1.26 16 2 O -0.33 -6.09 9.83 -91.84 -0.90 -6.99 16 3 C 0.11 2.44 6.70 22.74 0.15 2.59 16 4 C -0.19 -3.04 9.04 22.38 0.20 -2.84 16 5 C -0.09 -1.43 9.94 22.04 0.22 -1.21 16 6 C -0.13 -2.60 9.51 22.27 0.21 -2.39 16 7 C -0.13 -3.44 5.75 -21.22 -0.12 -3.56 16 8 C 0.42 13.22 7.53 133.93 1.01 14.23 16 9 N -0.69 -20.74 5.04 -343.92 -1.73 -22.47 16 10 C 0.16 5.83 4.59 86.38 0.40 6.22 16 11 C -0.07 -2.51 0.54 -52.18 -0.03 -2.54 16 12 C -0.12 -4.17 8.05 71.98 0.58 -3.59 16 13 C -0.12 -4.17 8.05 71.98 0.58 -3.59 16 14 C 0.04 2.11 4.04 29.85 0.12 2.23 16 15 C -0.51 -27.55 7.65 25.60 0.20 -27.36 16 16 H 0.07 3.63 5.68 -2.91 -0.02 3.61 16 17 C -0.01 -0.36 5.46 84.65 0.46 0.10 16 18 N -0.94 -57.32 13.29 21.45 0.28 -57.03 16 19 Si 0.96 43.87 29.54 68.60 2.03 45.89 16 20 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 21 H -0.28 -12.92 7.11 99.48 0.71 -12.22 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 N -0.59 -19.99 9.53 -193.23 -1.84 -21.83 16 24 C 0.11 3.23 11.06 84.05 0.93 4.16 16 25 C -0.22 -5.62 9.64 22.39 0.22 -5.40 16 26 C -0.03 -0.77 5.75 -21.22 -0.12 -0.89 16 27 H 0.07 0.43 7.67 -2.39 -0.02 0.41 16 28 H 0.12 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.43 7.67 -2.39 -0.02 0.41 16 30 H 0.16 1.46 6.27 -2.91 -0.02 1.44 16 31 H 0.16 1.45 8.06 -2.91 -0.02 1.42 16 32 H 0.14 2.34 6.49 -2.91 -0.02 2.32 16 33 H 0.42 10.26 4.31 -92.71 -0.40 9.86 16 34 H 0.04 1.79 8.14 -2.38 -0.02 1.77 16 35 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 37 H 0.06 2.08 6.62 -2.38 -0.02 2.06 16 38 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 39 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.06 2.08 6.62 -2.38 -0.02 2.06 16 41 H 0.06 1.76 6.86 -2.39 -0.02 1.74 16 42 H -0.01 -0.77 8.14 -2.39 -0.02 -0.79 16 43 H -0.01 -0.77 8.14 -2.38 -0.02 -0.79 16 44 H 0.26 15.00 8.31 -92.71 -0.77 14.23 16 45 H 0.17 3.82 8.06 -2.91 -0.02 3.80 16 46 H 0.15 3.25 7.72 -2.91 -0.02 3.22 16 Total: -1.00 -70.73 365.85 4.54 -66.19 By element: Atomic # 1 Polarization: 18.23 SS G_CDS: 0.59 Total: 18.82 kcal Atomic # 6 Polarization: -28.69 SS G_CDS: 6.11 Total: -22.57 kcal Atomic # 7 Polarization: -98.05 SS G_CDS: -3.29 Total: -101.34 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.90 Total: -6.99 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.89 kcal Total: -70.73 4.54 -66.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000450528769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.419 kcal (2) G-P(sol) polarization free energy of solvation -70.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.186 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.767 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds