Wall clock time and date at job start Tue Mar 31 2020 10:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32617 * 119.99768 * 2 1 4 4 C 1.47762 * 119.99560 * 180.27650 * 3 2 1 5 5 C 1.39601 * 120.07416 * 359.44600 * 4 3 2 6 6 C 1.37814 * 119.92472 * 179.81134 * 5 4 3 7 7 C 1.38999 * 120.07518 * 0.45043 * 6 5 4 8 8 N 1.39823 * 119.93047 * 179.76757 * 7 6 5 9 9 C 1.34774 * 119.99794 * 213.45249 * 8 7 6 10 10 O 1.21589 * 119.99990 * 5.31012 * 9 8 7 11 11 N 1.34781 * 120.00106 * 185.31763 * 9 8 7 12 12 C 1.46495 * 119.99993 * 179.97438 * 11 9 8 13 13 H 1.08999 * 110.01773 * 326.38699 * 12 11 9 14 14 C 1.54270 * 110.03210 * 87.83126 * 12 11 9 15 15 C 1.54895 * 104.19176 * 95.67238 * 14 12 11 16 16 C 1.54886 * 102.74952 * 37.94479 * 15 14 12 17 17 H 1.08997 * 110.48633 * 80.73449 * 16 15 14 18 18 C 1.50702 * 110.48251 * 203.37642 * 16 15 14 19 19 H 1.08004 * 120.00164 * 114.77777 * 18 16 15 20 20 C 1.37878 * 120.00297 * 294.77420 * 18 16 15 21 21 N 1.31512 * 119.99752 * 359.97438 * 20 18 16 22 22 Si 1.86794 * 120.00173 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47044 * 119.99682 * 22 20 18 25 25 H 1.48495 * 109.47178 * 239.99695 * 22 20 18 26 26 C 1.53875 * 110.03045 * 204.99781 * 12 11 9 27 27 C 1.39006 * 120.14052 * 359.78459 * 7 6 5 28 28 C 1.37817 * 120.07258 * 359.97438 * 27 7 6 29 29 H 1.09004 * 109.46785 * 60.00170 * 1 2 3 30 30 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47044 * 299.99741 * 1 2 3 32 32 H 1.07995 * 120.00338 * 180.02562 * 2 1 3 33 33 H 1.07995 * 119.99894 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.03516 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.96163 * 180.19144 * 6 5 4 36 36 H 0.96997 * 120.00318 * 33.44748 * 8 7 6 37 37 H 0.97001 * 119.99192 * 359.97438 * 11 9 8 38 38 H 1.08996 * 110.48339 * 214.34474 * 14 12 11 39 39 H 1.08994 * 110.48592 * 336.99312 * 14 12 11 40 40 H 1.09002 * 110.75658 * 279.62524 * 15 14 12 41 41 H 1.09005 * 110.90986 * 156.32746 * 15 14 12 42 42 H 0.97004 * 120.00220 * 180.02562 * 21 20 18 43 43 H 1.08997 * 110.03222 * 359.97438 * 26 12 11 44 44 H 1.08996 * 110.03300 * 121.43447 * 26 12 11 45 45 H 1.07997 * 119.96106 * 179.97438 * 27 7 6 46 46 H 1.07994 * 120.03416 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1700 1.1485 0.0000 4 6 3.6476 1.1485 -0.0062 5 6 4.3472 -0.0596 -0.0003 6 6 5.7253 -0.0561 -0.0101 7 6 6.4188 1.1486 -0.0162 8 7 7.8170 1.1486 -0.0211 9 6 8.4930 2.1244 0.6169 10 8 7.8913 2.9494 1.2770 11 7 9.8362 2.1860 0.5231 12 6 10.5710 3.2471 1.2162 13 1 9.9765 4.1605 1.2367 14 6 10.9092 2.8030 2.6544 15 6 12.3504 2.2450 2.5505 16 6 13.0196 3.2122 1.5427 17 1 13.3292 4.1299 2.0428 18 6 14.1983 2.5487 0.8782 19 1 14.1777 2.3481 -0.1828 20 6 15.3031 2.1978 1.6247 21 7 15.3285 2.4425 2.9166 22 14 16.7644 1.3760 0.8009 23 1 16.4882 1.2135 -0.6492 24 1 17.9738 2.2182 0.9836 25 1 16.9926 0.0426 1.4133 26 6 11.9128 3.5072 0.5094 27 6 5.7252 2.3532 -0.0171 28 6 4.3470 2.3566 -0.0124 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.0470 -0.9352 -0.0004 33 1 1.6300 2.0838 0.0004 34 1 3.8090 -0.9958 0.0083 35 1 6.2671 -0.9903 -0.0087 36 1 8.3004 0.4463 -0.4837 37 1 10.3162 1.5277 -0.0033 38 1 10.8780 3.6547 3.3338 39 1 10.2216 2.0246 2.9849 40 1 12.3432 1.2265 2.1621 41 1 12.8536 2.2849 3.5166 42 1 16.1060 2.1960 3.4418 43 1 12.0174 2.8437 -0.3490 44 1 11.9699 4.5470 0.1878 45 1 6.2669 3.2875 -0.0215 46 1 3.8088 3.2929 -0.0127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000455435558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:08 Heat of formation + Delta-G solvation = -3.756594 kcal Electronic energy + Delta-G solvation = -24777.647126 eV Core-core repulsion = 21245.594648 eV Total energy + Delta-G solvation = -3532.052478 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.63003 -39.04581 -37.34367 -35.65406 -34.12600 -33.56152 -31.95824 -31.09496 -30.04531 -28.18822 -27.25576 -26.10890 -23.95189 -23.40286 -22.23037 -21.12412 -19.66416 -19.47739 -19.20469 -18.22927 -17.59184 -16.58709 -16.24270 -15.69972 -14.99603 -14.89927 -14.64681 -14.36768 -14.06444 -14.00671 -13.70981 -13.60692 -13.24943 -13.02163 -12.97751 -12.80657 -12.39475 -11.85156 -11.73191 -11.55573 -11.21174 -11.05871 -11.05346 -10.90705 -10.69992 -10.55222 -10.45278 -9.99939 -9.90680 -9.60837 -9.48474 -9.25292 -9.02918 -8.84333 -8.65320 -8.39151 -7.73085 -6.04428 -4.07674 0.76917 1.33651 2.26970 2.71840 3.26054 3.27018 3.34853 3.37262 3.86949 4.29305 4.40617 4.51425 4.59614 4.81052 4.96058 5.07668 5.24229 5.27430 5.28853 5.30474 5.44299 5.46222 5.54611 5.63450 5.65189 5.79696 5.91014 6.02798 6.21805 6.25334 6.29297 6.32054 6.39743 6.46998 6.55493 6.62084 6.67367 6.71320 6.87818 6.90070 6.97696 7.03645 7.23631 7.34100 7.67566 7.83010 7.98757 8.07188 8.39531 8.65849 8.95202 9.56594 11.05017 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.002063 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.787874 B =13571.711751 C =13856.795526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.162 4.162 3 C -0.113 4.113 4 C -0.084 4.084 5 C -0.094 4.094 6 C -0.152 4.152 7 C 0.179 3.821 8 N -0.692 5.692 9 C 0.699 3.301 10 O -0.577 6.577 11 N -0.723 5.723 12 C 0.157 3.843 13 H 0.078 0.922 14 C -0.137 4.137 15 C -0.099 4.099 16 C 0.047 3.953 17 H 0.034 0.966 18 C -0.514 4.514 19 H 0.055 0.945 20 C 0.062 3.938 21 N -0.888 5.888 22 Si 0.888 3.112 23 H -0.274 1.274 24 H -0.284 1.284 25 H -0.285 1.285 26 C -0.122 4.122 27 C -0.121 4.121 28 C -0.087 4.087 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.112 0.888 33 H 0.116 0.884 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.406 0.594 37 H 0.397 0.603 38 H 0.062 0.938 39 H 0.050 0.950 40 H 0.045 0.955 41 H 0.067 0.933 42 H 0.259 0.741 43 H 0.061 0.939 44 H 0.055 0.945 45 H 0.138 0.862 46 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.694 -5.243 -7.222 25.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.180 4.180 3 C -0.131 4.131 4 C -0.085 4.085 5 C -0.112 4.112 6 C -0.172 4.172 7 C 0.083 3.917 8 N -0.339 5.339 9 C 0.400 3.600 10 O -0.454 6.454 11 N -0.376 5.376 12 C 0.053 3.947 13 H 0.096 0.904 14 C -0.176 4.176 15 C -0.137 4.137 16 C 0.029 3.971 17 H 0.052 0.948 18 C -0.552 4.552 19 H 0.073 0.927 20 C -0.139 4.139 21 N -0.526 5.526 22 Si 0.717 3.283 23 H -0.199 1.199 24 H -0.211 1.211 25 H -0.211 1.211 26 C -0.161 4.161 27 C -0.141 4.141 28 C -0.106 4.106 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.130 0.870 33 H 0.134 0.866 34 H 0.143 0.857 35 H 0.143 0.857 36 H 0.241 0.759 37 H 0.232 0.768 38 H 0.081 0.919 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.085 0.915 42 H 0.069 0.931 43 H 0.080 0.920 44 H 0.074 0.926 45 H 0.156 0.844 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -23.996 -4.438 -6.451 25.241 hybrid contribution 1.464 -1.237 -0.750 2.058 sum -22.531 -5.675 -7.201 24.325 Atomic orbital electron populations 1.20829 0.92902 1.02359 1.01981 1.23315 0.96077 0.98057 1.00510 1.21612 0.91926 0.98336 1.01273 1.18974 0.92976 0.93187 1.03398 1.20988 0.93166 0.97463 0.99586 1.20771 0.94383 0.96459 1.05630 1.17603 0.81723 0.93952 0.98442 1.42735 1.04675 1.29726 1.56744 1.16023 0.82448 0.81670 0.79862 1.90920 1.67915 1.41796 1.44810 1.45547 1.04089 1.33674 1.54335 1.21719 0.92445 0.88325 0.92225 0.90425 1.22865 0.99373 1.00225 0.95141 1.22456 0.91080 0.98702 1.01511 1.19479 0.91132 0.95355 0.91175 0.94829 1.21198 1.00333 1.39250 0.94464 0.92670 1.24986 0.98291 0.95822 0.94851 1.69967 1.29735 1.47341 1.05545 0.86600 0.82926 0.79199 0.79620 1.19863 1.21065 1.21135 1.22623 0.93339 1.00226 0.99876 1.21165 0.93985 0.97965 1.01007 1.21121 0.93486 0.97289 0.98706 0.91636 0.92047 0.91609 0.87036 0.86649 0.85700 0.85690 0.75852 0.76840 0.91923 0.93157 0.93587 0.91470 0.93101 0.91992 0.92647 0.84385 0.85725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.70 10.18 36.01 0.37 -0.33 16 2 C -0.16 -1.20 9.68 -36.21 -0.35 -1.55 16 3 C -0.11 -0.98 9.55 -37.59 -0.36 -1.34 16 4 C -0.08 -0.89 5.87 -104.99 -0.62 -1.50 16 5 C -0.09 -0.93 9.39 -39.23 -0.37 -1.30 16 6 C -0.15 -1.59 9.94 -39.45 -0.39 -1.99 16 7 C 0.18 2.25 6.28 -83.65 -0.53 1.73 16 8 N -0.69 -8.44 5.34 -14.19 -0.08 -8.51 16 9 C 0.70 10.93 8.29 -86.92 -0.72 10.21 16 10 O -0.58 -11.01 13.68 5.29 0.07 -10.94 16 11 N -0.72 -10.95 5.03 -57.58 -0.29 -11.24 16 12 C 0.16 2.78 3.25 -66.81 -0.22 2.56 16 13 H 0.08 1.41 7.56 -51.93 -0.39 1.02 16 14 C -0.14 -2.64 6.54 -25.07 -0.16 -2.80 16 15 C -0.10 -2.22 5.75 -24.74 -0.14 -2.36 16 16 C 0.05 1.11 2.72 -90.11 -0.25 0.87 16 17 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 18 C -0.51 -13.45 8.46 -34.44 -0.29 -13.74 16 19 H 0.06 1.42 7.54 -52.48 -0.40 1.02 16 20 C 0.06 1.68 5.35 -17.82 -0.10 1.58 16 21 N -0.89 -24.96 12.29 55.43 0.68 -24.27 16 22 Si 0.89 20.70 29.54 -169.99 -5.02 15.68 16 23 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 24 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 25 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 26 C -0.12 -2.34 6.13 -25.61 -0.16 -2.50 16 27 C -0.12 -1.61 8.63 -39.45 -0.34 -1.95 16 28 C -0.09 -0.99 9.77 -39.23 -0.38 -1.38 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 32 H 0.11 0.76 6.03 -52.49 -0.32 0.44 16 33 H 0.12 0.86 8.05 -52.49 -0.42 0.44 16 34 H 0.13 0.96 6.16 -52.49 -0.32 0.64 16 35 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.41 3.65 8.83 -40.82 -0.36 3.28 16 37 H 0.40 5.19 8.34 -40.82 -0.34 4.85 16 38 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 39 H 0.05 0.96 8.04 -51.93 -0.42 0.54 16 40 H 0.05 1.04 8.05 -51.93 -0.42 0.63 16 41 H 0.07 1.66 7.55 -51.93 -0.39 1.27 16 42 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 43 H 0.06 1.14 7.13 -51.93 -0.37 0.77 16 44 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 45 H 0.14 2.06 6.41 -52.49 -0.34 1.72 16 46 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 375.96 15.07 5.67 5.67 Total: -1.00 -30.63 375.96 -10.97 -41.61 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.00 Total: 7.80 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: -5.00 Total: -15.79 kcal Atomic # 7 Polarization: -44.34 SS G_CDS: 0.32 Total: -44.02 kcal Atomic # 8 Polarization: -11.01 SS G_CDS: 0.07 Total: -10.94 kcal Atomic # 14 Polarization: 20.70 SS G_CDS: -5.02 Total: 15.68 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.63 -10.97 -41.61 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455435558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.849 kcal (2) G-P(sol) polarization free energy of solvation -30.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.605 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds