Wall clock time and date at job start Tue Mar 31 2020 10:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.32617 * 119.99768 * 2 1 4 4 C 1.47762 * 119.99560 * 180.27650 * 3 2 1 5 5 C 1.39601 * 120.07416 * 359.44600 * 4 3 2 6 6 C 1.37814 * 119.92472 * 179.81134 * 5 4 3 7 7 C 1.38999 * 120.07518 * 0.45043 * 6 5 4 8 8 N 1.39823 * 119.93047 * 179.76757 * 7 6 5 9 9 C 1.34774 * 119.99794 * 213.45249 * 8 7 6 10 10 O 1.21589 * 119.99990 * 5.31012 * 9 8 7 11 11 N 1.34781 * 120.00106 * 185.31763 * 9 8 7 12 12 C 1.46495 * 119.99993 * 179.97438 * 11 9 8 13 13 H 1.08999 * 110.01773 * 326.38699 * 12 11 9 14 14 C 1.54270 * 110.03210 * 87.83126 * 12 11 9 15 15 C 1.54895 * 104.19176 * 95.67238 * 14 12 11 16 16 C 1.54886 * 102.74952 * 37.94479 * 15 14 12 17 17 H 1.08997 * 110.48633 * 80.73449 * 16 15 14 18 18 C 1.50702 * 110.48251 * 203.37642 * 16 15 14 19 19 H 1.08004 * 120.00164 * 114.77777 * 18 16 15 20 20 C 1.37878 * 120.00297 * 294.77420 * 18 16 15 21 21 N 1.31512 * 119.99752 * 359.97438 * 20 18 16 22 22 Si 1.86794 * 120.00173 * 180.02562 * 20 18 16 23 23 H 1.48502 * 109.47100 * 359.97438 * 22 20 18 24 24 H 1.48504 * 109.47044 * 119.99682 * 22 20 18 25 25 H 1.48495 * 109.47178 * 239.99695 * 22 20 18 26 26 C 1.53875 * 110.03045 * 204.99781 * 12 11 9 27 27 C 1.39006 * 120.14052 * 359.78459 * 7 6 5 28 28 C 1.37817 * 120.07258 * 359.97438 * 27 7 6 29 29 H 1.09004 * 109.46785 * 60.00170 * 1 2 3 30 30 H 1.09000 * 109.46962 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47044 * 299.99741 * 1 2 3 32 32 H 1.07995 * 120.00338 * 180.02562 * 2 1 3 33 33 H 1.07995 * 119.99894 * 0.02562 * 3 2 1 34 34 H 1.07994 * 120.03516 * 0.02562 * 5 4 3 35 35 H 1.07997 * 119.96163 * 180.19144 * 6 5 4 36 36 H 0.96997 * 120.00318 * 33.44748 * 8 7 6 37 37 H 0.97001 * 119.99192 * 359.97438 * 11 9 8 38 38 H 1.08996 * 110.48339 * 214.34474 * 14 12 11 39 39 H 1.08994 * 110.48592 * 336.99312 * 14 12 11 40 40 H 1.09002 * 110.75658 * 279.62524 * 15 14 12 41 41 H 1.09005 * 110.90986 * 156.32746 * 15 14 12 42 42 H 0.97004 * 120.00220 * 180.02562 * 21 20 18 43 43 H 1.08997 * 110.03222 * 359.97438 * 26 12 11 44 44 H 1.08996 * 110.03300 * 121.43447 * 26 12 11 45 45 H 1.07997 * 119.96106 * 179.97438 * 27 7 6 46 46 H 1.07994 * 120.03416 * 179.97438 * 28 27 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1700 1.1485 0.0000 4 6 3.6476 1.1485 -0.0062 5 6 4.3472 -0.0596 -0.0003 6 6 5.7253 -0.0561 -0.0101 7 6 6.4188 1.1486 -0.0162 8 7 7.8170 1.1486 -0.0211 9 6 8.4930 2.1244 0.6169 10 8 7.8913 2.9494 1.2770 11 7 9.8362 2.1860 0.5231 12 6 10.5710 3.2471 1.2162 13 1 9.9765 4.1605 1.2367 14 6 10.9092 2.8030 2.6544 15 6 12.3504 2.2450 2.5505 16 6 13.0196 3.2122 1.5427 17 1 13.3292 4.1299 2.0428 18 6 14.1983 2.5487 0.8782 19 1 14.1777 2.3481 -0.1828 20 6 15.3031 2.1978 1.6247 21 7 15.3285 2.4425 2.9166 22 14 16.7644 1.3760 0.8009 23 1 16.4882 1.2135 -0.6492 24 1 17.9738 2.2182 0.9836 25 1 16.9926 0.0426 1.4133 26 6 11.9128 3.5072 0.5094 27 6 5.7252 2.3532 -0.0171 28 6 4.3470 2.3566 -0.0124 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 2.0470 -0.9352 -0.0004 33 1 1.6300 2.0838 0.0004 34 1 3.8090 -0.9958 0.0083 35 1 6.2671 -0.9903 -0.0087 36 1 8.3004 0.4463 -0.4837 37 1 10.3162 1.5277 -0.0033 38 1 10.8780 3.6547 3.3338 39 1 10.2216 2.0246 2.9849 40 1 12.3432 1.2265 2.1621 41 1 12.8536 2.2849 3.5166 42 1 16.1060 2.1960 3.4418 43 1 12.0174 2.8437 -0.3490 44 1 11.9699 4.5470 0.1878 45 1 6.2669 3.2875 -0.0215 46 1 3.8088 3.2929 -0.0127 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000455435558.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:24:07 Heat of formation + Delta-G solvation = -20.011362 kcal Electronic energy + Delta-G solvation = -24778.351986 eV Core-core repulsion = 21245.594648 eV Total energy + Delta-G solvation = -3532.757337 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.74697 -40.07987 -38.80333 -36.55489 -35.32158 -34.89507 -33.65700 -31.92856 -30.88809 -29.94051 -28.74144 -26.96231 -25.75411 -24.33469 -23.13761 -22.21812 -21.14173 -20.97260 -20.17228 -19.39025 -18.66800 -18.39280 -17.16604 -16.89939 -16.54759 -16.21080 -15.92332 -15.74511 -15.32590 -15.09655 -14.60610 -14.38333 -14.25719 -14.07507 -13.95279 -13.72053 -13.67265 -13.54001 -12.96360 -12.77890 -12.55824 -12.47442 -12.33454 -12.30790 -12.15401 -11.89422 -11.69348 -11.56486 -11.44828 -11.19881 -11.06864 -10.79344 -10.45041 -10.32765 -9.95632 -9.88611 -8.55725 -8.09282 -6.18669 -0.02208 0.49321 1.41915 1.44714 1.49262 1.54850 1.63703 2.12149 2.45438 3.01945 3.20327 3.22291 3.85031 3.90185 3.94578 4.02684 4.05150 4.22638 4.30876 4.42948 4.47934 4.61486 4.67508 4.71418 4.75570 4.83344 4.88907 4.92859 5.00729 5.09403 5.11039 5.14751 5.19711 5.24197 5.31545 5.36108 5.43795 5.53238 5.55692 5.67668 5.69777 5.78269 5.91642 5.97431 5.98850 6.03196 6.11318 6.39352 6.92712 6.98964 7.47757 7.49130 8.99823 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.036844 B = 0.002063 C = 0.002020 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 759.787874 B =13571.711751 C =13856.795526 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.145 4.145 3 C -0.138 4.138 4 C -0.083 4.083 5 C -0.098 4.098 6 C -0.144 4.144 7 C 0.152 3.848 8 N -0.676 5.676 9 C 0.700 3.300 10 O -0.614 6.614 11 N -0.716 5.716 12 C 0.171 3.829 13 H 0.077 0.923 14 C -0.127 4.127 15 C -0.088 4.088 16 C 0.038 3.962 17 H 0.001 0.999 18 C -0.525 4.525 19 H 0.060 0.940 20 C 0.010 3.990 21 N -0.921 5.921 22 Si 0.952 3.048 23 H -0.263 1.263 24 H -0.286 1.286 25 H -0.284 1.284 26 C -0.109 4.109 27 C -0.141 4.141 28 C -0.100 4.100 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.120 0.880 33 H 0.123 0.877 34 H 0.152 0.848 35 H 0.150 0.850 36 H 0.422 0.578 37 H 0.409 0.591 38 H 0.061 0.939 39 H 0.054 0.946 40 H 0.040 0.960 41 H 0.035 0.965 42 H 0.258 0.742 43 H 0.073 0.927 44 H 0.064 0.936 45 H 0.114 0.886 46 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.491 -7.250 -8.775 27.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.163 4.163 3 C -0.155 4.155 4 C -0.083 4.083 5 C -0.116 4.116 6 C -0.165 4.165 7 C 0.057 3.943 8 N -0.324 5.324 9 C 0.400 3.600 10 O -0.494 6.494 11 N -0.371 5.371 12 C 0.065 3.935 13 H 0.095 0.905 14 C -0.165 4.165 15 C -0.126 4.126 16 C 0.019 3.981 17 H 0.019 0.981 18 C -0.563 4.563 19 H 0.078 0.922 20 C -0.189 4.189 21 N -0.561 5.561 22 Si 0.778 3.222 23 H -0.187 1.187 24 H -0.212 1.212 25 H -0.210 1.210 26 C -0.147 4.147 27 C -0.161 4.161 28 C -0.119 4.119 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.138 0.862 33 H 0.141 0.859 34 H 0.169 0.831 35 H 0.168 0.832 36 H 0.261 0.739 37 H 0.246 0.754 38 H 0.080 0.920 39 H 0.072 0.928 40 H 0.059 0.941 41 H 0.054 0.946 42 H 0.067 0.933 43 H 0.092 0.908 44 H 0.083 0.917 45 H 0.132 0.868 46 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -25.808 -6.486 -8.052 27.802 hybrid contribution 1.879 -0.643 -0.263 2.003 sum -23.929 -7.129 -8.314 26.317 Atomic orbital electron populations 1.20897 0.91574 1.03349 1.02491 1.23604 0.97166 0.97879 0.97655 1.21657 0.90978 0.99369 1.03540 1.19262 0.94141 0.93019 1.01920 1.21345 0.93146 0.98340 0.98819 1.21039 0.94775 0.96511 1.04167 1.17798 0.81670 0.94569 1.00282 1.42471 1.04720 1.29161 1.56056 1.16097 0.82294 0.81859 0.79722 1.90901 1.68597 1.43409 1.46505 1.45278 1.04066 1.33429 1.54283 1.21363 0.91946 0.89044 0.91107 0.90530 1.22749 0.97197 1.00103 0.96493 1.22215 0.92686 0.98266 0.99428 1.19459 0.92208 0.93968 0.92439 0.98126 1.21590 1.01158 1.38737 0.94783 0.92173 1.25771 1.01082 0.96647 0.95361 1.70106 1.30430 1.48647 1.06903 0.85594 0.79476 0.77960 0.79132 1.18666 1.21195 1.21021 1.22429 0.92276 1.01136 0.98901 1.21109 0.94874 0.97516 1.02631 1.21277 0.92939 0.98503 0.99135 0.90963 0.90871 0.91181 0.86215 0.85946 0.83088 0.83234 0.73939 0.75407 0.92033 0.92752 0.94086 0.94638 0.93280 0.90834 0.91716 0.86814 0.84709 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.06 10.18 71.24 0.73 -0.33 16 2 C -0.15 -1.74 9.68 24.52 0.24 -1.50 16 3 C -0.14 -2.11 9.55 23.63 0.23 -1.88 16 4 C -0.08 -1.61 5.87 -20.10 -0.12 -1.73 16 5 C -0.10 -1.71 9.39 22.50 0.21 -1.50 16 6 C -0.14 -2.72 9.94 22.35 0.22 -2.50 16 7 C 0.15 3.70 6.28 38.23 0.24 3.94 16 8 N -0.68 -15.72 5.34 -317.06 -1.69 -17.41 16 9 C 0.70 21.44 8.29 179.05 1.48 22.93 16 10 O -0.61 -23.63 13.68 -4.00 -0.05 -23.68 16 11 N -0.72 -20.87 5.03 -454.35 -2.29 -23.15 16 12 C 0.17 5.93 3.25 45.72 0.15 6.08 16 13 H 0.08 2.75 7.56 -2.39 -0.02 2.73 16 14 C -0.13 -4.88 6.54 31.67 0.21 -4.68 16 15 C -0.09 -4.00 5.75 31.89 0.18 -3.82 16 16 C 0.04 1.82 2.72 -10.47 -0.03 1.79 16 17 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 18 C -0.52 -27.45 8.46 25.60 0.22 -27.24 16 19 H 0.06 3.02 7.54 -2.91 -0.02 3.00 16 20 C 0.01 0.54 5.35 84.66 0.45 0.99 16 21 N -0.92 -52.99 12.29 21.45 0.26 -52.73 16 22 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 23 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 24 H -0.29 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.28 -12.54 7.11 99.48 0.71 -11.84 16 26 C -0.11 -4.10 6.13 31.32 0.19 -3.91 16 27 C -0.14 -3.81 8.63 22.35 0.19 -3.62 16 28 C -0.10 -2.27 9.77 22.50 0.22 -2.05 16 29 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 30 H 0.07 0.46 8.14 -2.39 -0.02 0.44 16 31 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 32 H 0.12 1.21 6.03 -2.91 -0.02 1.19 16 33 H 0.12 1.64 8.05 -2.91 -0.02 1.62 16 34 H 0.15 1.77 6.16 -2.91 -0.02 1.75 16 35 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.42 6.75 8.83 -92.71 -0.82 5.94 16 37 H 0.41 9.94 8.34 -92.71 -0.77 9.17 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.05 2.05 8.04 -2.39 -0.02 2.03 16 40 H 0.04 1.87 8.05 -2.39 -0.02 1.85 16 41 H 0.03 1.82 7.55 -2.38 -0.02 1.80 16 42 H 0.26 14.21 8.31 -92.70 -0.77 13.44 16 43 H 0.07 2.59 7.13 -2.39 -0.02 2.57 16 44 H 0.06 2.31 8.14 -2.39 -0.02 2.29 16 45 H 0.11 3.58 6.41 -2.91 -0.02 3.57 16 46 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 Total: -1.00 -67.10 375.96 2.67 -64.43 By element: Atomic # 1 Polarization: 27.68 SS G_CDS: -0.60 Total: 27.08 kcal Atomic # 6 Polarization: -24.04 SS G_CDS: 5.01 Total: -19.03 kcal Atomic # 7 Polarization: -89.57 SS G_CDS: -3.72 Total: -93.29 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Total: -67.10 2.67 -64.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000455435558.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.417 kcal (2) G-P(sol) polarization free energy of solvation -67.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.428 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds