Wall clock time and date at job start Tue Mar 31 2020 11:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47300 * 2 1 4 4 C 1.53001 * 109.47033 * 239.99999 * 2 1 3 5 5 C 1.47196 * 109.47194 * 60.00217 * 4 2 1 6 6 N 3.43553 * 83.99640 * 278.55356 * 2 1 3 7 7 C 1.53005 * 109.47135 * 120.00120 * 2 1 3 8 8 N 1.46506 * 109.46773 * 300.00013 * 7 2 1 9 9 C 1.34773 * 119.99707 * 179.97438 * 8 7 2 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09000 * 109.47339 * 299.99935 * 1 2 3 29 29 H 1.09001 * 109.47364 * 60.00112 * 1 2 3 30 30 H 1.09002 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47751 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47286 * 300.00271 * 3 2 1 33 33 H 1.09003 * 109.47358 * 59.99687 * 3 2 1 34 34 H 1.09007 * 109.46765 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.46969 * 299.99851 * 4 2 1 36 36 H 1.08999 * 109.47178 * 180.02562 * 7 2 1 37 37 H 1.08992 * 109.47341 * 59.99764 * 7 2 1 38 38 H 0.97001 * 120.00254 * 0.02562 * 8 7 2 39 39 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 40 40 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 41 41 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 42 42 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 43 43 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 44 44 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 45 45 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5493 -0.0273 -2.4511 6 7 1.1706 0.5082 -3.3787 7 6 2.0400 -0.7213 1.2493 8 7 1.5516 -0.0306 2.4454 9 6 1.8767 -0.4914 3.6695 10 8 2.5740 -1.4775 3.7808 11 6 1.3749 0.2193 4.8999 12 6 1.8847 -0.5020 6.1492 13 1 2.9695 -0.5956 6.0975 14 6 1.2653 -1.8736 6.2252 15 1 0.2830 -2.0463 5.8108 16 6 1.9526 -2.9082 6.8237 17 7 3.0893 -2.6721 7.4414 18 14 1.2690 -4.6455 6.7574 19 1 2.1898 -5.5673 7.4699 20 1 -0.0656 -4.6775 7.4080 21 1 1.1396 -5.0727 5.3411 22 6 1.5066 0.2885 7.3753 23 6 0.1747 0.4624 7.7020 24 6 -0.1721 1.1842 8.8287 25 6 0.8129 1.7392 9.6243 26 6 2.1446 1.5697 9.2946 27 6 2.4914 0.8446 8.1700 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 3.1300 -0.7209 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.9936 0.7578 2.3564 39 1 0.2849 0.2202 4.8999 40 1 1.7390 1.2468 4.9000 41 1 3.4829 -1.7861 7.4109 42 1 -0.5949 0.0320 7.0783 43 1 -1.2126 1.3168 9.0861 44 1 0.5418 2.3053 10.5032 45 1 2.9141 2.0036 9.9159 46 1 3.5319 0.7119 7.9128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000458045863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:02 Heat of formation + Delta-G solvation = -7.769184 kcal Electronic energy + Delta-G solvation = -25700.303057 eV Core-core repulsion = 22168.076580 eV Total energy + Delta-G solvation = -3532.226477 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.67599 -38.65550 -37.96529 -36.15531 -34.29352 -33.13547 -31.32287 -30.12094 -29.16288 -28.63923 -27.61402 -26.62849 -24.64569 -22.85218 -21.69027 -20.42831 -19.77801 -19.51397 -17.52511 -16.99898 -16.44135 -15.90918 -15.55493 -15.34764 -14.88213 -14.82104 -14.37120 -14.08007 -13.77753 -13.72050 -13.63231 -13.10752 -12.91239 -12.87295 -12.70998 -12.57309 -12.35817 -12.30307 -11.98063 -11.87053 -11.80485 -11.46497 -11.21323 -11.11635 -11.01470 -10.89277 -10.71100 -10.44102 -10.14399 -10.04781 -9.66028 -9.06045 -8.68011 -8.59145 -8.26710 -8.14989 -7.64239 -6.23468 -3.91213 2.18077 2.23888 2.46605 2.53257 3.45090 3.49680 3.50099 3.54925 3.70388 3.81520 4.39819 4.41522 4.54879 4.60247 4.66489 4.93301 5.14422 5.23658 5.36768 5.39012 5.50822 5.52760 5.58785 5.61076 5.62341 5.72602 5.73957 5.75417 5.86219 5.97983 6.00350 6.02389 6.07929 6.16203 6.30683 6.41372 6.67843 6.78019 6.83279 6.92364 7.19284 7.21671 7.29817 7.37356 7.71150 7.84960 7.98844 8.22282 8.50325 8.96392 9.00530 9.78149 11.16899 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.003399 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.584889 B = 8235.408264 C = 9563.317924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.070 4.070 3 C -0.147 4.147 4 C -0.020 4.020 5 C 0.215 3.785 6 N -0.443 5.443 7 C 0.134 3.866 8 N -0.747 5.747 9 C 0.514 3.486 10 O -0.498 6.498 11 C -0.118 4.118 12 C 0.073 3.927 13 H 0.051 0.949 14 C -0.568 4.568 15 H 0.045 0.955 16 C 0.033 3.967 17 N -0.905 5.905 18 Si 1.062 2.938 19 H -0.284 1.284 20 H -0.291 1.291 21 H -0.288 1.288 22 C -0.031 4.031 23 C -0.108 4.108 24 C -0.130 4.130 25 C -0.153 4.153 26 C -0.124 4.124 27 C -0.130 4.130 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.064 0.936 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.392 0.608 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.270 0.730 42 H 0.114 0.886 43 H 0.107 0.893 44 H 0.106 0.894 45 H 0.107 0.893 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.444 8.318 -10.346 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.072 4.072 3 C -0.205 4.205 4 C -0.061 4.061 5 C -0.102 4.102 6 N -0.120 5.120 7 C 0.009 3.991 8 N -0.404 5.404 9 C 0.300 3.700 10 O -0.370 6.370 11 C -0.158 4.158 12 C 0.054 3.946 13 H 0.069 0.931 14 C -0.605 4.605 15 H 0.063 0.937 16 C -0.173 4.173 17 N -0.541 5.541 18 Si 0.891 3.109 19 H -0.210 1.210 20 H -0.218 1.218 21 H -0.215 1.215 22 C -0.032 4.032 23 C -0.126 4.126 24 C -0.148 4.148 25 C -0.171 4.171 26 C -0.143 4.143 27 C -0.148 4.148 28 H 0.083 0.917 29 H 0.073 0.927 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.132 0.868 35 H 0.132 0.868 36 H 0.086 0.914 37 H 0.088 0.912 38 H 0.227 0.773 39 H 0.097 0.903 40 H 0.083 0.917 41 H 0.081 0.919 42 H 0.132 0.868 43 H 0.125 0.875 44 H 0.124 0.876 45 H 0.125 0.875 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -3.200 6.798 -11.105 13.408 hybrid contribution -0.508 1.673 -0.142 1.755 sum -3.708 8.471 -11.247 14.560 Atomic orbital electron populations 1.21964 0.93428 1.02913 1.02202 1.20771 0.96834 0.96285 0.93321 1.21962 1.01781 0.94501 1.02216 1.19393 1.02629 0.98963 0.85098 1.29060 0.93297 0.93622 0.94264 1.81242 1.09370 1.09606 1.11789 1.21166 0.99181 0.96021 0.82687 1.46187 1.56011 1.32709 1.05513 1.20832 0.80416 0.84917 0.83820 1.90755 1.35662 1.24508 1.86026 1.21686 1.01533 0.98250 0.94336 1.17858 0.98200 0.93337 0.85245 0.93093 1.21520 1.04029 0.92775 1.42220 0.93691 1.25568 0.95451 1.03711 0.92561 1.70759 1.19151 1.25971 1.38216 0.83649 0.75215 0.75805 0.76182 1.20975 1.21804 1.21504 1.20835 0.92543 0.91260 0.98517 1.20914 0.96544 0.98230 0.96951 1.21014 0.98290 0.99442 0.96030 1.20826 0.93300 1.02871 1.00144 1.20965 0.95788 1.00075 0.97422 1.21067 0.99157 0.98663 0.95956 0.91663 0.92702 0.91621 0.91712 0.92687 0.91693 0.86808 0.86761 0.91374 0.91201 0.77336 0.90339 0.91741 0.91865 0.86751 0.87474 0.87607 0.87478 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 8.05 37.16 0.30 -0.81 16 2 C -0.07 -0.51 0.55 -154.51 -0.09 -0.59 16 3 C -0.15 -1.06 8.05 37.16 0.30 -0.76 16 4 C -0.02 -0.12 4.79 -29.52 -0.14 -0.26 16 5 C 0.22 1.86 12.89 -20.76 -0.27 1.59 16 6 N -0.44 -5.19 18.54 42.15 0.78 -4.41 16 7 C 0.13 1.39 4.57 -4.04 -0.02 1.37 16 8 N -0.75 -9.41 4.96 -60.29 -0.30 -9.71 16 9 C 0.51 9.37 7.58 -10.99 -0.08 9.29 16 10 O -0.50 -11.66 15.02 5.55 0.08 -11.58 16 11 C -0.12 -2.15 4.94 -27.88 -0.14 -2.29 16 12 C 0.07 1.68 1.31 -92.92 -0.12 1.56 16 13 H 0.05 1.33 6.23 -51.93 -0.32 1.01 16 14 C -0.57 -15.01 6.40 -34.44 -0.22 -15.23 16 15 H 0.04 1.19 7.82 -52.49 -0.41 0.78 16 16 C 0.03 0.92 5.45 -17.82 -0.10 0.83 16 17 N -0.91 -27.15 13.63 55.43 0.76 -26.40 16 18 Si 1.06 25.72 29.91 -169.99 -5.08 20.64 16 19 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 20 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 21 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 22 C -0.03 -0.67 4.77 -104.62 -0.50 -1.16 16 23 C -0.11 -2.16 8.88 -39.59 -0.35 -2.51 16 24 C -0.13 -2.29 10.05 -39.58 -0.40 -2.68 16 25 C -0.15 -2.61 10.05 -39.58 -0.40 -3.01 16 26 C -0.12 -2.24 10.05 -39.59 -0.40 -2.64 16 27 C -0.13 -2.67 9.67 -39.59 -0.38 -3.05 16 28 H 0.06 0.49 6.86 -51.93 -0.36 0.14 16 29 H 0.05 0.43 7.23 -51.93 -0.38 0.06 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.05 0.42 7.23 -51.93 -0.38 0.04 16 33 H 0.06 0.47 6.86 -51.93 -0.36 0.11 16 34 H 0.11 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.11 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.39 3.88 6.16 -40.82 -0.25 3.63 16 39 H 0.08 1.34 7.87 -51.93 -0.41 0.93 16 40 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.27 8.00 6.68 -40.82 -0.27 7.72 16 42 H 0.11 2.21 7.80 -52.48 -0.41 1.80 16 43 H 0.11 1.59 8.06 -52.48 -0.42 1.16 16 44 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 45 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 46 H 0.11 2.22 7.95 -52.49 -0.42 1.80 16 LS Contribution 381.27 15.07 5.75 5.75 Total: -1.00 -34.37 381.27 -8.00 -42.37 By element: Atomic # 1 Polarization: 10.68 SS G_CDS: -6.98 Total: 3.70 kcal Atomic # 6 Polarization: -17.36 SS G_CDS: -3.00 Total: -20.36 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 1.24 Total: -40.52 kcal Atomic # 8 Polarization: -11.66 SS G_CDS: 0.08 Total: -11.58 kcal Atomic # 14 Polarization: 25.72 SS G_CDS: -5.08 Total: 20.64 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -34.37 -8.00 -42.37 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.605 kcal (2) G-P(sol) polarization free energy of solvation -34.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.230 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds