Wall clock time and date at job start Tue Mar 31 2020 11:03:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47300 * 2 1 4 4 C 1.53001 * 109.47033 * 239.99999 * 2 1 3 5 5 C 1.47196 * 109.47194 * 60.00217 * 4 2 1 6 6 N 3.43553 * 83.99640 * 278.55356 * 2 1 3 7 7 C 1.53005 * 109.47135 * 120.00120 * 2 1 3 8 8 N 1.46506 * 109.46773 * 300.00013 * 7 2 1 9 9 C 1.34773 * 119.99707 * 179.97438 * 8 7 2 10 10 O 1.21284 * 120.00085 * 0.02562 * 9 8 7 11 11 C 1.50697 * 119.99804 * 179.97438 * 9 8 7 12 12 C 1.53001 * 109.47066 * 180.02562 * 11 9 8 13 13 H 1.08997 * 109.47486 * 54.05268 * 12 11 9 14 14 C 1.50698 * 109.46901 * 294.05498 * 12 11 9 15 15 H 1.08002 * 120.00397 * 330.08136 * 14 12 11 16 16 C 1.37877 * 119.99983 * 150.08139 * 14 12 11 17 17 N 1.31513 * 120.00147 * 6.55933 * 16 14 12 18 18 Si 1.86806 * 120.00054 * 186.55449 * 16 14 12 19 19 H 1.48501 * 109.47229 * 179.97438 * 18 16 14 20 20 H 1.48498 * 109.47340 * 300.00345 * 18 16 14 21 21 H 1.48505 * 109.46728 * 60.00313 * 18 16 14 22 22 C 1.50704 * 109.47322 * 174.05774 * 12 11 9 23 23 C 1.38232 * 120.00156 * 64.30019 * 22 12 11 24 24 C 1.38227 * 120.00423 * 179.81276 * 23 22 12 25 25 C 1.38243 * 119.99751 * 0.39675 * 24 23 22 26 26 C 1.38236 * 119.99618 * 359.85625 * 25 24 23 27 27 C 1.38229 * 120.00074 * 359.95579 * 26 25 24 28 28 H 1.09000 * 109.47339 * 299.99935 * 1 2 3 29 29 H 1.09001 * 109.47364 * 60.00112 * 1 2 3 30 30 H 1.09002 * 109.47121 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.47751 * 179.97438 * 3 2 1 32 32 H 1.09006 * 109.47286 * 300.00271 * 3 2 1 33 33 H 1.09003 * 109.47358 * 59.99687 * 3 2 1 34 34 H 1.09007 * 109.46765 * 180.02562 * 4 2 1 35 35 H 1.09002 * 109.46969 * 299.99851 * 4 2 1 36 36 H 1.08999 * 109.47178 * 180.02562 * 7 2 1 37 37 H 1.08992 * 109.47341 * 59.99764 * 7 2 1 38 38 H 0.97001 * 120.00254 * 0.02562 * 8 7 2 39 39 H 1.08997 * 109.47426 * 60.00323 * 11 9 8 40 40 H 1.09004 * 109.47237 * 299.99638 * 11 9 8 41 41 H 0.96997 * 119.99910 * 354.72326 * 17 16 14 42 42 H 1.08007 * 119.99790 * 359.97438 * 23 22 12 43 43 H 1.08004 * 120.00499 * 180.23296 * 24 23 22 44 44 H 1.08002 * 119.99679 * 179.83680 * 25 24 23 45 45 H 1.07995 * 119.99385 * 179.97438 * 26 25 24 46 46 H 1.08000 * 119.99707 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.5493 -0.0273 -2.4511 6 7 1.1706 0.5082 -3.3787 7 6 2.0400 -0.7213 1.2493 8 7 1.5516 -0.0306 2.4454 9 6 1.8767 -0.4914 3.6695 10 8 2.5740 -1.4775 3.7808 11 6 1.3749 0.2193 4.8999 12 6 1.8847 -0.5020 6.1492 13 1 2.9695 -0.5956 6.0975 14 6 1.2653 -1.8736 6.2252 15 1 0.2830 -2.0463 5.8108 16 6 1.9526 -2.9082 6.8237 17 7 3.0893 -2.6721 7.4414 18 14 1.2690 -4.6455 6.7574 19 1 2.1898 -5.5673 7.4699 20 1 -0.0656 -4.6775 7.4080 21 1 1.1396 -5.0727 5.3411 22 6 1.5066 0.2885 7.3753 23 6 0.1747 0.4624 7.7020 24 6 -0.1721 1.1842 8.8287 25 6 0.8129 1.7392 9.6243 26 6 2.1446 1.5697 9.2946 27 6 2.4914 0.8446 8.1700 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 3.1300 1.4425 0.0005 32 1 1.6766 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 3.1300 -0.7216 -1.2490 35 1 1.6766 -1.7489 -1.2492 36 1 3.1300 -0.7209 1.2495 37 1 1.6767 -1.7489 1.2493 38 1 0.9936 0.7578 2.3564 39 1 0.2849 0.2202 4.8999 40 1 1.7390 1.2468 4.9000 41 1 3.4829 -1.7861 7.4109 42 1 -0.5949 0.0320 7.0783 43 1 -1.2126 1.3168 9.0861 44 1 0.5418 2.3053 10.5032 45 1 2.9141 2.0036 9.9159 46 1 3.5319 0.7119 7.9128 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000458045863.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:03:01 Heat of formation + Delta-G solvation = -27.976603 kcal Electronic energy + Delta-G solvation = -25701.179316 eV Core-core repulsion = 22168.076580 eV Total energy + Delta-G solvation = -3533.102736 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -40.89187 -39.97074 -39.10177 -37.03986 -36.02484 -34.32682 -33.19014 -31.58317 -30.55486 -29.28097 -28.22309 -27.86392 -26.33486 -24.49193 -23.17549 -21.84890 -21.07873 -20.55053 -18.76070 -18.16139 -17.94689 -17.24983 -16.68352 -16.36415 -16.04979 -15.80857 -15.60955 -15.57507 -15.45961 -14.87817 -14.67236 -14.36452 -14.25318 -14.00904 -13.92080 -13.55550 -13.53726 -13.38464 -13.32894 -13.09313 -12.81510 -12.59024 -12.50402 -12.38363 -12.03878 -11.92945 -11.89857 -11.71449 -11.69650 -11.66773 -11.43256 -10.67646 -10.55729 -10.25929 -9.83464 -9.61824 -9.23826 -8.39492 -6.05372 0.70196 0.76667 1.52611 1.63034 1.76202 1.78069 1.86003 2.00774 2.45523 2.66066 3.06604 3.13664 3.43938 3.76552 3.78452 3.88612 4.16552 4.20232 4.28521 4.31129 4.34274 4.47722 4.53562 4.58978 4.67684 4.76695 4.80533 4.84812 4.85672 4.87068 4.91419 5.00822 5.04421 5.09647 5.17714 5.27112 5.34604 5.38456 5.44405 5.47185 5.70770 5.77002 5.85498 5.98794 6.28662 6.34652 6.43959 6.63602 6.79901 6.84556 7.62989 7.70552 9.01013 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013645 B = 0.003399 C = 0.002927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2051.584889 B = 8235.408264 C = 9563.317924 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.056 4.056 3 C -0.148 4.148 4 C -0.019 4.019 5 C 0.242 3.758 6 N -0.499 5.499 7 C 0.132 3.868 8 N -0.724 5.724 9 C 0.513 3.487 10 O -0.559 6.559 11 C -0.114 4.114 12 C 0.074 3.926 13 H 0.008 0.992 14 C -0.556 4.556 15 H 0.040 0.960 16 C -0.024 4.024 17 N -0.943 5.943 18 Si 1.098 2.902 19 H -0.291 1.291 20 H -0.271 1.271 21 H -0.281 1.281 22 C -0.055 4.055 23 C -0.123 4.123 24 C -0.125 4.125 25 C -0.146 4.146 26 C -0.126 4.126 27 C -0.153 4.153 28 H 0.064 0.936 29 H 0.052 0.948 30 H 0.067 0.933 31 H 0.069 0.931 32 H 0.052 0.948 33 H 0.065 0.935 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.067 0.933 37 H 0.063 0.937 38 H 0.409 0.591 39 H 0.094 0.906 40 H 0.090 0.910 41 H 0.258 0.742 42 H 0.115 0.885 43 H 0.142 0.858 44 H 0.145 0.855 45 H 0.134 0.866 46 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.253 9.594 -10.130 14.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.057 4.057 3 C -0.205 4.205 4 C -0.059 4.059 5 C -0.074 4.074 6 N -0.177 5.177 7 C 0.009 3.991 8 N -0.379 5.379 9 C 0.300 3.700 10 O -0.436 6.436 11 C -0.154 4.154 12 C 0.055 3.945 13 H 0.026 0.974 14 C -0.594 4.594 15 H 0.058 0.942 16 C -0.222 4.222 17 N -0.582 5.582 18 Si 0.923 3.077 19 H -0.217 1.217 20 H -0.196 1.196 21 H -0.207 1.207 22 C -0.055 4.055 23 C -0.141 4.141 24 C -0.143 4.143 25 C -0.164 4.164 26 C -0.144 4.144 27 C -0.172 4.172 28 H 0.083 0.917 29 H 0.071 0.929 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.071 0.929 33 H 0.084 0.916 34 H 0.156 0.844 35 H 0.154 0.846 36 H 0.085 0.915 37 H 0.081 0.919 38 H 0.246 0.754 39 H 0.113 0.887 40 H 0.108 0.892 41 H 0.068 0.932 42 H 0.133 0.867 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.152 0.848 46 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.061 8.131 -10.934 14.536 hybrid contribution 0.026 1.411 -0.206 1.426 sum -5.034 9.542 -11.141 15.509 Atomic orbital electron populations 1.21977 0.93434 1.03056 1.02124 1.20603 0.96642 0.96131 0.92368 1.21973 1.02162 0.94228 1.02141 1.19596 1.04098 0.99377 0.82867 1.29436 0.91752 0.92311 0.93927 1.81274 1.11333 1.11443 1.13626 1.21293 0.99192 0.95903 0.82752 1.45913 1.54751 1.32650 1.04631 1.20830 0.79723 0.84116 0.85321 1.90738 1.38596 1.27210 1.87022 1.21583 1.02305 0.98959 0.92579 1.17688 0.95424 0.93006 0.88375 0.97384 1.21793 1.03266 0.94430 1.39908 0.94160 1.26701 0.95549 1.07110 0.92868 1.70851 1.20792 1.25387 1.41155 0.83180 0.75474 0.72489 0.76560 1.21739 1.19593 1.20722 1.20666 0.93826 0.92872 0.98160 1.21010 0.95563 0.99246 0.98312 1.21406 1.00349 0.97840 0.94721 1.21298 0.92445 1.01867 1.00790 1.21293 0.97450 0.99106 0.96519 1.21133 0.98441 1.00218 0.97384 0.91671 0.92871 0.91407 0.91190 0.92914 0.91632 0.84400 0.84580 0.91513 0.91870 0.75395 0.88744 0.89213 0.93170 0.86718 0.84049 0.83719 0.84846 0.88633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 8.05 71.98 0.58 -1.36 16 2 C -0.06 -0.69 0.55 -52.18 -0.03 -0.71 16 3 C -0.15 -1.83 8.05 71.98 0.58 -1.25 16 4 C -0.02 -0.17 4.79 28.79 0.14 -0.03 16 5 C 0.24 3.79 12.89 89.44 1.15 4.94 16 6 N -0.50 -11.31 18.54 20.01 0.37 -10.94 16 7 C 0.13 2.56 4.57 86.38 0.39 2.96 16 8 N -0.72 -17.35 4.96 -463.05 -2.30 -19.65 16 9 C 0.51 18.80 7.58 87.66 0.66 19.46 16 10 O -0.56 -27.06 15.02 -3.04 -0.05 -27.11 16 11 C -0.11 -4.16 4.94 29.85 0.15 -4.01 16 12 C 0.07 3.54 1.31 -12.29 -0.02 3.53 16 13 H 0.01 0.44 6.23 -2.39 -0.01 0.43 16 14 C -0.56 -30.09 6.40 25.60 0.16 -29.93 16 15 H 0.04 2.15 7.82 -2.91 -0.02 2.13 16 16 C -0.02 -1.39 5.45 84.65 0.46 -0.93 16 17 N -0.94 -59.15 13.63 21.45 0.29 -58.85 16 18 Si 1.10 52.74 29.91 68.60 2.05 54.79 16 19 H -0.29 -14.21 7.11 99.48 0.71 -13.50 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 21 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 22 C -0.05 -2.38 4.77 -19.87 -0.09 -2.48 16 23 C -0.12 -4.75 8.88 22.27 0.20 -4.55 16 24 C -0.13 -4.01 10.05 22.27 0.22 -3.79 16 25 C -0.15 -4.45 10.05 22.27 0.22 -4.23 16 26 C -0.13 -4.30 10.05 22.27 0.22 -4.07 16 27 C -0.15 -6.38 9.67 22.27 0.22 -6.16 16 28 H 0.06 0.85 6.86 -2.39 -0.02 0.83 16 29 H 0.05 0.74 7.23 -2.39 -0.02 0.72 16 30 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 31 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.05 0.71 7.23 -2.38 -0.02 0.69 16 33 H 0.06 0.80 6.86 -2.39 -0.02 0.78 16 34 H 0.14 0.67 8.14 -2.38 -0.02 0.65 16 35 H 0.14 0.73 8.14 -2.39 -0.02 0.71 16 36 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 37 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 38 H 0.41 7.25 6.16 -92.71 -0.57 6.68 16 39 H 0.09 3.12 7.87 -2.39 -0.02 3.10 16 40 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 41 H 0.26 16.26 6.68 -92.71 -0.62 15.64 16 42 H 0.11 4.30 7.80 -2.91 -0.02 4.28 16 43 H 0.14 3.53 8.06 -2.91 -0.02 3.51 16 44 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 45 H 0.13 3.76 8.06 -2.91 -0.02 3.74 16 46 H 0.10 4.11 7.95 -2.91 -0.02 4.09 16 Total: -1.00 -79.15 381.27 6.15 -72.99 By element: Atomic # 1 Polarization: 20.84 SS G_CDS: 0.55 Total: 21.39 kcal Atomic # 6 Polarization: -37.85 SS G_CDS: 5.23 Total: -32.62 kcal Atomic # 7 Polarization: -87.81 SS G_CDS: -1.63 Total: -89.44 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -0.05 Total: -27.11 kcal Atomic # 14 Polarization: 52.74 SS G_CDS: 2.05 Total: 54.79 kcal Total: -79.15 6.15 -72.99 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000458045863.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.017 kcal (2) G-P(sol) polarization free energy of solvation -79.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.993 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.977 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds