Wall clock time and date at job start Tue Mar 31 2020 11:38:51
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52993 * 109.46976 * 2 1
4 4 C 1.50699 * 109.47082 * 120.00031 * 2 1 3
5 5 H 1.07999 * 120.00232 * 124.71767 * 4 2 1
6 6 C 1.37882 * 119.99847 * 304.71641 * 4 2 1
7 7 N 1.31517 * 119.99681 * 151.99861 * 6 4 2
8 8 Si 1.86794 * 119.99933 * 331.99948 * 6 4 2
9 9 H 1.48509 * 109.46775 * 180.02562 * 8 6 4
10 10 H 1.48500 * 109.47227 * 60.00102 * 8 6 4
11 11 H 1.48501 * 109.47307 * 299.99737 * 8 6 4
12 12 C 1.53002 * 109.47243 * 240.00045 * 2 1 3
13 13 N 1.46497 * 109.47110 * 59.99974 * 12 2 1
14 14 C 1.34773 * 119.99774 * 180.02562 * 13 12 2
15 15 O 1.21582 * 120.00485 * 359.97438 * 14 13 12
16 16 N 1.34782 * 119.99800 * 179.97438 * 14 13 12
17 17 C 1.46505 * 119.99975 * 179.97438 * 16 14 13
18 18 H 1.09004 * 115.53875 * 350.59951 * 17 16 14
19 19 C 1.53038 * 117.48203 * 205.00073 * 17 16 14
20 20 H 1.08997 * 119.41227 * 140.82553 * 19 17 16
21 21 C 1.53446 * 118.58294 * 345.17246 * 19 17 16
22 22 C 1.53647 * 105.69871 * 295.68066 * 21 19 17
23 23 C 1.38781 * 129.42482 * 179.89983 * 22 21 19
24 24 C 1.38015 * 120.30984 * 180.77206 * 23 22 21
25 25 C 1.38256 * 119.87726 * 359.97438 * 24 23 22
26 26 C 1.38009 * 119.88755 * 359.97438 * 25 24 23
27 27 C 1.37815 * 110.75461 * 0.58833 * 22 21 19
28 28 C 1.50946 * 110.48090 * 359.36092 * 27 22 21
29 29 H 1.09001 * 117.43447 * 220.74167 * 28 27 22
30 30 H 1.08994 * 109.47315 * 293.26147 * 1 2 3
31 31 H 1.08997 * 109.46861 * 53.26857 * 1 2 3
32 32 H 1.09007 * 109.47059 * 173.26434 * 1 2 3
33 33 H 1.09001 * 109.47253 * 172.46171 * 3 2 1
34 34 H 1.08998 * 109.47300 * 292.46045 * 3 2 1
35 35 H 1.09003 * 109.47341 * 52.46340 * 3 2 1
36 36 H 0.96999 * 120.00536 * 354.89289 * 7 6 4
37 37 H 1.08994 * 109.47000 * 179.97438 * 12 2 1
38 38 H 1.09004 * 109.47155 * 299.99762 * 12 2 1
39 39 H 0.97002 * 119.99998 * 359.97438 * 13 12 2
40 40 H 0.97002 * 119.99972 * 359.97438 * 16 14 13
41 41 H 1.08997 * 109.91862 * 56.34894 * 21 19 17
42 42 H 1.08997 * 109.91912 * 177.66297 * 21 19 17
43 43 H 1.07997 * 119.84473 * 0.77497 * 23 22 21
44 44 H 1.07995 * 120.06207 * 180.02562 * 24 23 22
45 45 H 1.08008 * 120.05302 * 179.97438 * 25 24 23
46 46 H 1.08001 * 119.84146 * 180.02562 * 26 25 24
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4424 0.0000
4 6 2.0323 -0.7104 1.2305
5 1 2.7146 -1.5420 1.1332
6 6 1.6210 -0.2987 2.4804
7 7 1.5706 -1.1602 3.4729
8 14 1.1351 1.4825 2.7641
9 1 0.7348 1.6665 4.1823
10 1 -0.0044 1.8319 1.8782
11 1 2.2892 2.3653 2.4575
12 6 2.0401 -0.7212 -1.2492
13 7 1.5517 -0.0306 -2.4454
14 6 1.8770 -0.4914 -3.6694
15 8 2.5760 -1.4799 -3.7810
16 7 1.4273 0.1437 -4.7699
17 6 1.7812 -0.3569 -6.1006
18 1 2.5351 -1.1439 -6.1214
19 6 1.7745 0.6455 -7.2570
20 1 2.5510 0.5880 -8.0197
21 6 1.0821 1.9993 -7.0511
22 6 -0.4054 1.6775 -6.8397
23 6 -1.4692 2.5383 -6.6086
24 6 -2.7429 2.0386 -6.4278
25 6 -2.9610 0.6743 -6.4774
26 6 -1.9044 -0.1831 -6.7081
27 6 -0.6227 0.3175 -6.8893
28 6 0.6710 -0.4149 -7.1511
29 1 0.6398 -1.2586 -7.8405
30 1 -0.3633 0.4058 0.9441
31 1 -0.3633 0.6146 -0.8236
32 1 -0.3633 -1.0206 -0.1205
33 1 3.1216 1.4455 0.1348
34 1 1.7909 1.9159 -0.9497
35 1 1.5707 1.9937 0.8149
36 1 1.7511 -2.0991 3.3098
37 1 3.1300 -0.7208 -1.2494
38 1 1.6768 -1.7490 -1.2492
39 1 0.9937 0.7578 -2.3564
40 1 0.8693 0.9321 -4.6809
41 1 1.5107 2.5081 -6.1877
42 1 1.1970 2.6147 -7.9433
43 1 -1.2995 3.6041 -6.5702
44 1 -3.5679 2.7121 -6.2486
45 1 -3.9566 0.2801 -6.3358
46 1 -2.0757 -1.2487 -6.7471
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000459264691.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:38:51
Heat of formation + Delta-G solvation = 30.974235 kcal
Electronic energy + Delta-G solvation = -26108.273927 eV
Core-core repulsion = 22577.727491 eV
Total energy + Delta-G solvation = -3530.546436 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.90 seconds
Orbital eigenvalues (eV)
-41.19312 -39.44639 -37.55748 -36.57189 -33.50725 -33.03234 -31.77530 -31.31695
-30.30551 -27.96536 -26.34589 -25.84036 -24.39608 -23.50730 -22.08314 -21.11875
-20.59337 -20.04260 -19.14951 -18.34371 -16.79521 -16.70099 -16.02262 -15.71460
-15.12370 -15.03966 -14.95823 -14.55067 -14.21882 -13.76988 -13.71793 -13.35486
-13.17109 -12.82234 -12.78268 -12.66829 -12.58483 -12.01502 -12.00293 -11.84734
-11.57276 -11.42742 -11.15084 -11.06361 -10.57413 -10.38184 -10.17606 -10.06881
-9.94273 -9.89998 -9.18485 -9.04120 -9.00344 -8.88871 -8.61127 -8.26471
-8.12943 -6.52284 -4.08099 1.07431 1.13287 2.88557 3.14292 3.33423
3.40769 3.53865 3.62228 3.69377 4.15114 4.26217 4.45819 4.47102
4.58629 4.63727 4.79998 4.84490 4.87097 5.14309 5.17897 5.25440
5.30679 5.47913 5.54163 5.60505 5.65643 5.77012 5.82959 5.91548
6.09566 6.12395 6.19271 6.27928 6.38461 6.39352 6.46451 6.55567
6.59600 6.65717 6.74397 6.75131 6.84298 7.01451 7.22542 7.28615
7.49590 8.12383 8.33045 8.35993 8.86430 8.91551 9.55685 10.84802
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.017162 B = 0.003317 C = 0.003059
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1631.123980 B = 8440.515248 C = 9152.077725
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.140 4.140
2 C 0.034 3.966
3 C -0.148 4.148
4 C -0.606 4.606
5 H 0.061 0.939
6 C 0.044 3.956
7 N -0.890 5.890
8 Si 1.050 2.950
9 H -0.299 1.299
10 H -0.277 1.277
11 H -0.288 1.288
12 C 0.161 3.839
13 N -0.736 5.736
14 C 0.703 3.297
15 O -0.595 6.595
16 N -0.721 5.721
17 C 0.153 3.847
18 H 0.150 0.850
19 C -0.171 4.171
20 H 0.128 0.872
21 C -0.054 4.054
22 C -0.105 4.105
23 C -0.107 4.107
24 C -0.120 4.120
25 C -0.119 4.119
26 C -0.101 4.101
27 C -0.057 4.057
28 C -0.143 4.143
29 H 0.122 0.878
30 H 0.055 0.945
31 H 0.020 0.980
32 H 0.045 0.955
33 H 0.053 0.947
34 H 0.027 0.973
35 H 0.040 0.960
36 H 0.272 0.728
37 H 0.057 0.943
38 H 0.058 0.942
39 H 0.392 0.608
40 H 0.396 0.604
41 H 0.085 0.915
42 H 0.084 0.916
43 H 0.121 0.879
44 H 0.124 0.876
45 H 0.124 0.876
46 H 0.120 0.880
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -6.429 8.284 -23.741 25.953
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.198 4.198
2 C 0.033 3.967
3 C -0.205 4.205
4 C -0.644 4.644
5 H 0.079 0.921
6 C -0.164 4.164
7 N -0.521 5.521
8 Si 0.882 3.118
9 H -0.227 1.227
10 H -0.205 1.205
11 H -0.215 1.215
12 C 0.039 3.961
13 N -0.390 5.390
14 C 0.403 3.597
15 O -0.474 6.474
16 N -0.375 5.375
17 C 0.045 3.955
18 H 0.167 0.833
19 C -0.191 4.191
20 H 0.145 0.855
21 C -0.091 4.091
22 C -0.105 4.105
23 C -0.125 4.125
24 C -0.138 4.138
25 C -0.137 4.137
26 C -0.119 4.119
27 C -0.057 4.057
28 C -0.163 4.163
29 H 0.140 0.860
30 H 0.074 0.926
31 H 0.039 0.961
32 H 0.064 0.936
33 H 0.073 0.927
34 H 0.046 0.954
35 H 0.059 0.941
36 H 0.082 0.918
37 H 0.075 0.925
38 H 0.076 0.924
39 H 0.226 0.774
40 H 0.230 0.770
41 H 0.103 0.897
42 H 0.103 0.897
43 H 0.139 0.861
44 H 0.142 0.858
45 H 0.142 0.858
46 H 0.138 0.862
Dipole moment (debyes) X Y Z Total
from point charges -6.224 8.395 -22.578 24.879
hybrid contribution -0.209 -0.315 -1.235 1.291
sum -6.432 8.080 -23.812 25.955
Atomic orbital electron populations
1.22209 0.97986 0.99960 0.99609 1.18668 0.92310 0.92178 0.93588
1.22353 1.01384 0.98610 0.98186 1.21647 1.32994 1.19248 0.90477
0.92121 1.25653 0.93486 1.04708 0.92505 1.70835 1.41413 1.04323
1.35575 0.84250 0.76695 0.76474 0.74356 1.22728 1.20506 1.21536
1.21390 0.98127 0.95409 0.81210 1.45535 1.55690 1.33075 1.04718
1.15981 0.80344 0.82855 0.80532 1.90887 1.43017 1.27497 1.85956
1.44522 1.56356 1.32812 1.03775 1.21550 0.97652 0.98504 0.77834
0.83260 1.23542 1.01097 0.91635 1.02803 0.85463 1.20740 0.89415
0.96132 1.02771 1.21059 0.95052 0.93756 1.00607 1.20664 0.91902
0.99376 1.00587 1.21041 0.96747 0.95531 1.00485 1.21057 0.98856
0.93523 1.00222 1.20712 0.91462 0.99981 0.99723 1.19572 0.93168
0.93504 0.99430 1.22196 0.88138 1.01095 1.04856 0.86017 0.92589
0.96126 0.93633 0.92746 0.95413 0.94130 0.91811 0.92465 0.92397
0.77368 0.77000 0.89677 0.89727 0.86140 0.85819 0.85814 0.86171
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -2.97 7.88 37.16 0.29 -2.68 16
2 C 0.03 0.77 0.50 -155.66 -0.08 0.69 16
3 C -0.15 -3.05 7.44 37.15 0.28 -2.77 16
4 C -0.61 -16.46 8.42 -34.44 -0.29 -16.75 16
5 H 0.06 1.79 7.99 -52.49 -0.42 1.37 16
6 C 0.04 1.23 5.08 -17.82 -0.09 1.14 16
7 N -0.89 -26.68 13.70 55.43 0.76 -25.92 16
8 Si 1.05 24.93 23.32 -169.99 -3.96 20.96 16
9 H -0.30 -7.30 7.11 56.52 0.40 -6.89 16
10 H -0.28 -6.02 5.62 56.52 0.32 -5.70 16
11 H -0.29 -6.50 6.80 56.52 0.38 -6.12 16
12 C 0.16 3.40 4.50 -4.04 -0.02 3.38 16
13 N -0.74 -12.80 4.93 -65.23 -0.32 -13.12 16
14 C 0.70 12.25 8.57 -86.92 -0.74 11.51 16
15 O -0.60 -12.62 15.91 5.29 0.08 -12.53 16
16 N -0.72 -9.53 5.14 -58.67 -0.30 -9.83 16
17 C 0.15 1.73 6.37 -67.93 -0.43 1.30 16
18 H 0.15 1.83 7.40 -51.93 -0.38 1.44 16
19 C -0.17 -1.46 7.04 -90.16 -0.63 -2.09 16
20 H 0.13 0.85 8.14 -51.93 -0.42 0.43 16
21 C -0.05 -0.43 6.07 -26.16 -0.16 -0.59 16
22 C -0.10 -0.99 5.38 -103.09 -0.55 -1.55 16
23 C -0.11 -0.95 10.04 -39.46 -0.40 -1.34 16
24 C -0.12 -1.04 10.05 -39.66 -0.40 -1.44 16
25 C -0.12 -1.09 10.04 -39.66 -0.40 -1.49 16
26 C -0.10 -1.03 10.04 -39.46 -0.40 -1.42 16
27 C -0.06 -0.59 5.45 -104.45 -0.57 -1.16 16
28 C -0.14 -1.39 6.87 -91.46 -0.63 -2.02 16
29 H 0.12 1.04 8.14 -51.93 -0.42 0.61 16
30 H 0.06 1.25 4.43 -51.93 -0.23 1.02 16
31 H 0.02 0.36 7.06 -51.93 -0.37 -0.01 16
32 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16
33 H 0.05 1.14 8.13 -51.93 -0.42 0.71 16
34 H 0.03 0.47 6.68 -51.93 -0.35 0.12 16
35 H 0.04 0.85 2.88 -51.93 -0.15 0.70 16
36 H 0.27 8.12 8.73 -40.82 -0.36 7.76 16
37 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16
38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16
39 H 0.39 5.99 6.23 -40.82 -0.25 5.73 16
40 H 0.40 4.64 6.83 -40.82 -0.28 4.36 16
41 H 0.08 0.67 7.91 -51.93 -0.41 0.26 16
42 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16
43 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16
44 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16
45 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16
46 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16
LS Contribution 357.64 15.07 5.39 5.39
Total: -1.00 -31.79 357.64 -10.32 -42.11
By element:
Atomic # 1 Polarization: 16.97 SS G_CDS: -6.74 Total: 10.23 kcal
Atomic # 6 Polarization: -12.07 SS G_CDS: -5.22 Total: -17.29 kcal
Atomic # 7 Polarization: -49.01 SS G_CDS: 0.14 Total: -48.87 kcal
Atomic # 8 Polarization: -12.62 SS G_CDS: 0.08 Total: -12.53 kcal
Atomic # 14 Polarization: 24.93 SS G_CDS: -3.96 Total: 20.96 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -31.79 -10.32 -42.11 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000459264691.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 73.079 kcal
(2) G-P(sol) polarization free energy of solvation -31.786 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.293 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.319 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.105 kcal
(6) G-S(sol) free energy of system = (1) + (5) 30.974 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds