Wall clock time and date at job start Tue Mar 31 2020 11:28:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47298 * 276.92483 * 3 2 1 5 5 C 1.36911 * 120.00236 * 288.74094 * 4 3 2 6 6 H 1.07999 * 119.99919 * 165.65477 * 5 4 3 7 7 C 1.39009 * 119.99628 * 345.65248 * 5 4 3 8 8 N 1.31393 * 120.00319 * 36.86987 * 7 5 4 9 9 Si 1.86801 * 120.00093 * 216.87012 * 7 5 4 10 10 H 1.48506 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47495 * 120.00242 * 9 7 5 12 12 H 1.48508 * 109.47202 * 240.00448 * 9 7 5 13 13 C 1.34774 * 119.99927 * 108.73352 * 4 3 2 14 14 O 1.21635 * 120.00521 * 186.49214 * 13 4 3 15 15 C 1.47413 * 120.00221 * 6.49481 * 13 4 3 16 16 C 1.39857 * 120.07994 * 140.86579 * 15 13 4 17 17 C 1.37594 * 119.92705 * 180.02562 * 16 15 13 18 18 C 1.39226 * 120.07308 * 0.02562 * 17 16 15 19 19 N 1.39064 * 119.92493 * 179.97438 * 18 17 16 20 20 C 1.46497 * 119.99548 * 0.02562 * 19 18 17 21 21 C 1.46498 * 120.00130 * 179.97438 * 19 18 17 22 22 C 1.53003 * 109.46769 * 90.00425 * 21 19 18 23 23 C 1.53002 * 109.46872 * 175.00033 * 22 21 19 24 24 C 1.53007 * 109.47106 * 294.99732 * 22 21 19 25 25 C 1.39232 * 120.15246 * 0.25208 * 18 17 16 26 26 C 1.37593 * 120.07601 * 359.45012 * 25 18 17 27 27 H 4.40643 * 5.51403 * 179.97438 * 4 1 2 28 28 H 1.09006 * 109.47028 * 156.92666 * 3 2 1 29 29 H 1.09000 * 109.47228 * 36.93256 * 3 2 1 30 30 H 0.96996 * 120.00032 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.03169 * 0.02562 * 16 15 13 32 32 H 1.08002 * 119.95979 * 180.02562 * 17 16 15 33 33 H 1.08999 * 109.47514 * 269.99760 * 20 19 18 34 34 H 1.09004 * 109.47387 * 30.00161 * 20 19 18 35 35 H 1.09000 * 109.46902 * 149.99918 * 20 19 18 36 36 H 1.08998 * 109.47173 * 330.00216 * 21 19 18 37 37 H 1.08997 * 109.47097 * 210.00490 * 21 19 18 38 38 H 1.08991 * 109.47294 * 54.99924 * 22 21 19 39 39 H 1.08998 * 109.46929 * 60.00088 * 23 22 21 40 40 H 1.09005 * 109.47128 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.47035 * 299.99875 * 23 22 21 42 42 H 1.09000 * 109.46638 * 300.00440 * 24 22 21 43 43 H 1.08997 * 109.46852 * 60.00057 * 24 22 21 44 44 H 1.08995 * 109.47030 * 180.02562 * 24 22 21 45 45 H 1.08005 * 119.96575 * 179.72467 * 25 18 17 46 46 H 1.07999 * 120.04364 * 180.25348 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1656 1.3711 5 6 3.0030 0.8558 2.2733 6 1 3.1434 0.6667 3.3272 7 6 2.6890 2.1362 1.8325 8 7 1.8577 2.2999 0.8282 9 14 3.4487 3.6242 2.6681 10 1 4.3436 3.1732 3.7641 11 1 4.2334 4.4021 1.6761 12 1 2.3725 4.4801 3.2290 13 6 3.7130 -1.3242 1.7444 14 8 4.0113 -1.5074 2.9093 15 6 3.9844 -2.3695 0.7411 16 6 5.1683 -3.1113 0.8042 17 6 5.4187 -4.0859 -0.1342 18 6 4.4952 -4.3335 -1.1463 19 7 4.7516 -5.3189 -2.0935 20 6 5.9921 -6.0953 -2.0253 21 6 3.7808 -5.5812 -3.1588 22 6 4.0980 -4.6974 -4.3668 23 6 3.1632 -5.0591 -5.5228 24 6 3.8983 -3.2279 -3.9901 25 6 3.3182 -3.5930 -1.2156 26 6 3.0587 -2.6211 -0.2768 27 1 -1.0500 0.0002 0.0001 28 1 3.0089 0.9463 -0.4028 29 1 3.0097 -0.8206 -0.6175 30 1 1.6383 3.1934 0.5209 31 1 5.8852 -2.9194 1.5888 32 1 6.3326 -4.6594 -0.0857 33 1 6.7672 -5.5934 -2.6044 34 1 6.3115 -6.1793 -0.9866 35 1 5.8204 -7.0909 -2.4343 36 1 2.7767 -5.3575 -2.7985 37 1 3.8366 -6.6298 -3.4511 38 1 5.1320 -4.8569 -4.6722 39 1 2.1292 -4.8995 -5.2174 40 1 3.3889 -4.4291 -6.3833 41 1 3.3055 -6.1059 -5.7912 42 1 2.8642 -3.0685 -3.6847 43 1 4.5642 -2.9703 -3.1665 44 1 4.1239 -2.5984 -4.8508 45 1 2.6059 -3.7846 -2.0046 46 1 2.1436 -2.0498 -0.3287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491013105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:19 Heat of formation + Delta-G solvation = 89.477664 kcal Electronic energy + Delta-G solvation = -26510.656657 eV Core-core repulsion = 22982.647121 eV Total energy + Delta-G solvation = -3528.009537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -39.96413 -38.58339 -36.55992 -35.16317 -34.42027 -32.14410 -31.26420 -30.72882 -29.76917 -27.66397 -27.18191 -26.41212 -25.50289 -24.11938 -22.15632 -21.33317 -20.20576 -19.15527 -17.94435 -17.41451 -16.45273 -16.30365 -15.71167 -15.18417 -14.93171 -14.77383 -14.33838 -14.17191 -14.05169 -13.60336 -13.43662 -13.35278 -13.06809 -12.79652 -12.48292 -12.27356 -12.22879 -12.13976 -11.97456 -11.87993 -11.60532 -11.28635 -11.23378 -11.02231 -10.95877 -10.82790 -10.51677 -10.23273 -10.20984 -9.54957 -9.34309 -9.08860 -8.65216 -8.43899 -8.30372 -7.99621 -7.02910 -6.44907 -3.69729 1.71840 1.83909 3.13116 3.16126 3.29489 3.38610 3.72802 3.94530 4.08888 4.23089 4.46231 4.61235 4.73184 4.82691 4.88467 5.03771 5.13083 5.16316 5.24326 5.31870 5.36732 5.42979 5.51915 5.57901 5.63284 5.64675 5.69998 5.77544 5.80848 5.85939 5.90283 5.98103 6.02602 6.17955 6.30407 6.33859 6.44329 6.54011 6.75989 6.86827 7.04766 7.11066 7.12634 7.35348 7.54186 7.66656 8.12925 8.47164 8.91889 9.17242 9.40052 9.99841 10.54316 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.003811 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.260607 B = 7345.046296 C = 8251.064518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C -0.102 4.102 3 C 0.202 3.798 4 N -0.430 5.430 5 C -0.327 4.327 6 H 0.109 0.891 7 C 0.048 3.952 8 N -0.833 5.833 9 Si 0.900 3.100 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.284 1.284 13 C 0.483 3.517 14 O -0.588 6.588 15 C -0.150 4.150 16 C -0.031 4.031 17 C -0.206 4.206 18 C 0.216 3.784 19 N -0.631 5.631 20 C 0.095 3.905 21 C 0.128 3.872 22 C -0.115 4.115 23 C -0.146 4.146 24 C -0.151 4.151 25 C -0.201 4.201 26 C -0.066 4.066 27 H 0.198 0.802 28 H 0.097 0.903 29 H 0.091 0.909 30 H 0.269 0.731 31 H 0.125 0.875 32 H 0.120 0.880 33 H 0.044 0.956 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.056 0.944 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.066 0.934 44 H 0.048 0.952 45 H 0.125 0.875 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.768 -13.792 -14.045 20.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.281 4.281 2 C -0.104 4.104 3 C 0.079 3.921 4 N -0.147 5.147 5 C -0.453 4.453 6 H 0.127 0.873 7 C -0.159 4.159 8 N -0.468 5.468 9 Si 0.725 3.275 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.210 1.210 13 C 0.274 3.726 14 O -0.474 6.474 15 C -0.155 4.155 16 C -0.051 4.051 17 C -0.228 4.228 18 C 0.115 3.885 19 N -0.342 5.342 20 C -0.048 4.048 21 C 0.004 3.996 22 C -0.135 4.135 23 C -0.204 4.204 24 C -0.208 4.208 25 C -0.223 4.223 26 C -0.085 4.085 27 H 0.215 0.785 28 H 0.115 0.885 29 H 0.108 0.892 30 H 0.079 0.921 31 H 0.143 0.857 32 H 0.138 0.862 33 H 0.063 0.937 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.086 0.914 39 H 0.075 0.925 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.085 0.915 44 H 0.067 0.933 45 H 0.142 0.858 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 3.870 -13.821 -13.687 19.832 hybrid contribution -0.075 1.031 0.192 1.051 sum 3.795 -12.790 -13.495 18.976 Atomic orbital electron populations 1.24199 0.95286 1.06363 1.02223 1.22828 0.94002 0.95344 0.98181 1.19136 0.84673 1.02631 0.85617 1.43678 1.48819 1.12732 1.09433 1.19550 1.48767 0.85416 0.91601 0.87343 1.25244 0.94904 0.99002 0.96749 1.70316 1.25097 1.23428 1.27994 0.86320 0.80026 0.81256 0.79878 1.18921 1.20453 1.21019 1.17718 0.84527 0.82419 0.87938 1.90606 1.58516 1.79493 1.18785 1.19990 0.96743 1.00641 0.98145 1.20872 0.95456 0.92463 0.96327 1.20518 1.00747 1.03468 0.98069 1.17813 0.93667 0.88471 0.88535 1.46198 1.20933 1.38259 1.28798 1.21589 0.86249 0.94778 1.02222 1.21519 0.92908 0.98447 0.86701 1.21601 0.99960 0.96624 0.95297 1.21798 0.99685 1.01021 0.97890 1.22056 1.02382 0.94732 1.01615 1.20689 0.97931 1.00593 1.03073 1.21530 0.99161 0.95331 0.92486 0.78492 0.88499 0.89198 0.92068 0.85676 0.86227 0.93743 0.91273 0.92013 0.90531 0.91237 0.91381 0.92454 0.92515 0.92903 0.92281 0.91547 0.93256 0.85776 0.84517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.57 19.24 29.55 0.57 -5.00 16 2 C -0.10 -2.34 9.63 -37.12 -0.36 -2.70 16 3 C 0.20 4.61 4.80 -6.83 -0.03 4.58 16 4 N -0.43 -11.22 2.68 -119.16 -0.32 -11.54 16 5 C -0.33 -9.23 9.09 -15.00 -0.14 -9.37 16 6 H 0.11 3.27 7.43 -52.49 -0.39 2.88 16 7 C 0.05 1.26 5.01 -17.45 -0.09 1.17 16 8 N -0.83 -21.61 9.03 55.50 0.50 -21.11 16 9 Si 0.90 20.51 29.68 -169.99 -5.04 15.46 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 13 C 0.48 12.39 7.29 -12.53 -0.09 12.30 16 14 O -0.59 -17.06 16.53 5.25 0.09 -16.97 16 15 C -0.15 -3.10 5.40 -104.95 -0.57 -3.67 16 16 C -0.03 -0.57 9.62 -39.21 -0.38 -0.94 16 17 C -0.21 -3.05 9.18 -39.45 -0.36 -3.41 16 18 C 0.22 3.00 5.39 -83.84 -0.45 2.55 16 19 N -0.63 -6.83 2.86 -179.62 -0.51 -7.35 16 20 C 0.09 0.80 10.22 59.85 0.61 1.41 16 21 C 0.13 1.15 4.99 -4.04 -0.02 1.13 16 22 C -0.11 -1.00 3.13 -90.61 -0.28 -1.28 16 23 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16 24 C -0.15 -1.59 7.63 37.16 0.28 -1.31 16 25 C -0.20 -2.97 7.09 -39.45 -0.28 -3.25 16 26 C -0.07 -1.19 7.33 -39.21 -0.29 -1.47 16 27 H 0.20 3.44 7.80 -54.09 -0.42 3.02 16 28 H 0.10 2.32 6.59 -51.93 -0.34 1.98 16 29 H 0.09 1.80 3.79 -51.93 -0.20 1.60 16 30 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16 31 H 0.13 2.26 8.05 -52.49 -0.42 1.84 16 32 H 0.12 1.47 6.11 -52.49 -0.32 1.15 16 33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 34 H 0.07 0.58 6.17 -51.93 -0.32 0.26 16 35 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16 36 H 0.08 0.73 6.18 -51.93 -0.32 0.41 16 37 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16 38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 42 H 0.06 0.63 6.63 -51.93 -0.34 0.28 16 43 H 0.07 0.84 5.85 -51.93 -0.30 0.53 16 44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.12 1.59 4.34 -52.48 -0.23 1.36 16 46 H 0.14 2.57 4.65 -52.49 -0.24 2.33 16 LS Contribution 362.86 15.07 5.47 5.47 Total: -1.00 -31.86 362.86 -7.70 -39.56 By element: Atomic # 1 Polarization: 12.78 SS G_CDS: -6.35 Total: 6.43 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: -1.53 Total: -9.96 kcal Atomic # 7 Polarization: -39.66 SS G_CDS: -0.33 Total: -39.99 kcal Atomic # 8 Polarization: -17.06 SS G_CDS: 0.09 Total: -16.97 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.04 Total: 15.46 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.86 -7.70 -39.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491013105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.036 kcal (2) G-P(sol) polarization free energy of solvation -31.862 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds