Wall clock time and date at job start Tue Mar 31 2020 11:28:19
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.17396 * 1
3 3 C 1.47202 * 179.97438 * 2 1
4 4 N 1.46495 * 109.47298 * 276.92483 * 3 2 1
5 5 C 1.36911 * 120.00236 * 288.74094 * 4 3 2
6 6 H 1.07999 * 119.99919 * 165.65477 * 5 4 3
7 7 C 1.39009 * 119.99628 * 345.65248 * 5 4 3
8 8 N 1.31393 * 120.00319 * 36.86987 * 7 5 4
9 9 Si 1.86801 * 120.00093 * 216.87012 * 7 5 4
10 10 H 1.48506 * 109.46994 * 359.97438 * 9 7 5
11 11 H 1.48497 * 109.47495 * 120.00242 * 9 7 5
12 12 H 1.48508 * 109.47202 * 240.00448 * 9 7 5
13 13 C 1.34774 * 119.99927 * 108.73352 * 4 3 2
14 14 O 1.21635 * 120.00521 * 186.49214 * 13 4 3
15 15 C 1.47413 * 120.00221 * 6.49481 * 13 4 3
16 16 C 1.39857 * 120.07994 * 140.86579 * 15 13 4
17 17 C 1.37594 * 119.92705 * 180.02562 * 16 15 13
18 18 C 1.39226 * 120.07308 * 0.02562 * 17 16 15
19 19 N 1.39064 * 119.92493 * 179.97438 * 18 17 16
20 20 C 1.46497 * 119.99548 * 0.02562 * 19 18 17
21 21 C 1.46498 * 120.00130 * 179.97438 * 19 18 17
22 22 C 1.53003 * 109.46769 * 90.00425 * 21 19 18
23 23 C 1.53002 * 109.46872 * 175.00033 * 22 21 19
24 24 C 1.53007 * 109.47106 * 294.99732 * 22 21 19
25 25 C 1.39232 * 120.15246 * 0.25208 * 18 17 16
26 26 C 1.37593 * 120.07601 * 359.45012 * 25 18 17
27 27 H 4.40643 * 5.51403 * 179.97438 * 4 1 2
28 28 H 1.09006 * 109.47028 * 156.92666 * 3 2 1
29 29 H 1.09000 * 109.47228 * 36.93256 * 3 2 1
30 30 H 0.96996 * 120.00032 * 179.97438 * 8 7 5
31 31 H 1.07999 * 120.03169 * 0.02562 * 16 15 13
32 32 H 1.08002 * 119.95979 * 180.02562 * 17 16 15
33 33 H 1.08999 * 109.47514 * 269.99760 * 20 19 18
34 34 H 1.09004 * 109.47387 * 30.00161 * 20 19 18
35 35 H 1.09000 * 109.46902 * 149.99918 * 20 19 18
36 36 H 1.08998 * 109.47173 * 330.00216 * 21 19 18
37 37 H 1.08997 * 109.47097 * 210.00490 * 21 19 18
38 38 H 1.08991 * 109.47294 * 54.99924 * 22 21 19
39 39 H 1.08998 * 109.46929 * 60.00088 * 23 22 21
40 40 H 1.09005 * 109.47128 * 179.97438 * 23 22 21
41 41 H 1.09003 * 109.47035 * 299.99875 * 23 22 21
42 42 H 1.09000 * 109.46638 * 300.00440 * 24 22 21
43 43 H 1.08997 * 109.46852 * 60.00057 * 24 22 21
44 44 H 1.08995 * 109.47030 * 180.02562 * 24 22 21
45 45 H 1.08005 * 119.96575 * 179.72467 * 25 18 17
46 46 H 1.07999 * 120.04364 * 180.25348 * 26 25 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.1740 0.0000 0.0000
3 6 2.6460 0.0007 0.0000
4 7 3.1344 -0.1656 1.3711
5 6 3.0030 0.8558 2.2733
6 1 3.1434 0.6667 3.3272
7 6 2.6890 2.1362 1.8325
8 7 1.8577 2.2999 0.8282
9 14 3.4487 3.6242 2.6681
10 1 4.3436 3.1732 3.7641
11 1 4.2334 4.4021 1.6761
12 1 2.3725 4.4801 3.2290
13 6 3.7130 -1.3242 1.7444
14 8 4.0113 -1.5074 2.9093
15 6 3.9844 -2.3695 0.7411
16 6 5.1683 -3.1113 0.8042
17 6 5.4187 -4.0859 -0.1342
18 6 4.4952 -4.3335 -1.1463
19 7 4.7516 -5.3189 -2.0935
20 6 5.9921 -6.0953 -2.0253
21 6 3.7808 -5.5812 -3.1588
22 6 4.0980 -4.6974 -4.3668
23 6 3.1632 -5.0591 -5.5228
24 6 3.8983 -3.2279 -3.9901
25 6 3.3182 -3.5930 -1.2156
26 6 3.0587 -2.6211 -0.2768
27 1 -1.0500 0.0002 0.0001
28 1 3.0089 0.9463 -0.4028
29 1 3.0097 -0.8206 -0.6175
30 1 1.6383 3.1934 0.5209
31 1 5.8852 -2.9194 1.5888
32 1 6.3326 -4.6594 -0.0857
33 1 6.7672 -5.5934 -2.6044
34 1 6.3115 -6.1793 -0.9866
35 1 5.8204 -7.0909 -2.4343
36 1 2.7767 -5.3575 -2.7985
37 1 3.8366 -6.6298 -3.4511
38 1 5.1320 -4.8569 -4.6722
39 1 2.1292 -4.8995 -5.2174
40 1 3.3889 -4.4291 -6.3833
41 1 3.3055 -6.1059 -5.7912
42 1 2.8642 -3.0685 -3.6847
43 1 4.5642 -2.9703 -3.1665
44 1 4.1239 -2.5984 -4.8508
45 1 2.6059 -3.7846 -2.0046
46 1 2.1436 -2.0498 -0.3287
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000491013105.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 11:28:19
Heat of formation + Delta-G solvation = 89.477664 kcal
Electronic energy + Delta-G solvation = -26510.656657 eV
Core-core repulsion = 22982.647121 eV
Total energy + Delta-G solvation = -3528.009537 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-39.96413 -38.58339 -36.55992 -35.16317 -34.42027 -32.14410 -31.26420 -30.72882
-29.76917 -27.66397 -27.18191 -26.41212 -25.50289 -24.11938 -22.15632 -21.33317
-20.20576 -19.15527 -17.94435 -17.41451 -16.45273 -16.30365 -15.71167 -15.18417
-14.93171 -14.77383 -14.33838 -14.17191 -14.05169 -13.60336 -13.43662 -13.35278
-13.06809 -12.79652 -12.48292 -12.27356 -12.22879 -12.13976 -11.97456 -11.87993
-11.60532 -11.28635 -11.23378 -11.02231 -10.95877 -10.82790 -10.51677 -10.23273
-10.20984 -9.54957 -9.34309 -9.08860 -8.65216 -8.43899 -8.30372 -7.99621
-7.02910 -6.44907 -3.69729 1.71840 1.83909 3.13116 3.16126 3.29489
3.38610 3.72802 3.94530 4.08888 4.23089 4.46231 4.61235 4.73184
4.82691 4.88467 5.03771 5.13083 5.16316 5.24326 5.31870 5.36732
5.42979 5.51915 5.57901 5.63284 5.64675 5.69998 5.77544 5.80848
5.85939 5.90283 5.98103 6.02602 6.17955 6.30407 6.33859 6.44329
6.54011 6.75989 6.86827 7.04766 7.11066 7.12634 7.35348 7.54186
7.66656 8.12925 8.47164 8.91889 9.17242 9.40052 9.99841 10.54316
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.017559 B = 0.003811 C = 0.003393
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1594.260607 B = 7345.046296 C = 8251.064518
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.262 4.262
2 C -0.102 4.102
3 C 0.202 3.798
4 N -0.430 5.430
5 C -0.327 4.327
6 H 0.109 0.891
7 C 0.048 3.952
8 N -0.833 5.833
9 Si 0.900 3.100
10 H -0.265 1.265
11 H -0.279 1.279
12 H -0.284 1.284
13 C 0.483 3.517
14 O -0.588 6.588
15 C -0.150 4.150
16 C -0.031 4.031
17 C -0.206 4.206
18 C 0.216 3.784
19 N -0.631 5.631
20 C 0.095 3.905
21 C 0.128 3.872
22 C -0.115 4.115
23 C -0.146 4.146
24 C -0.151 4.151
25 C -0.201 4.201
26 C -0.066 4.066
27 H 0.198 0.802
28 H 0.097 0.903
29 H 0.091 0.909
30 H 0.269 0.731
31 H 0.125 0.875
32 H 0.120 0.880
33 H 0.044 0.956
34 H 0.069 0.931
35 H 0.061 0.939
36 H 0.076 0.924
37 H 0.069 0.931
38 H 0.068 0.932
39 H 0.056 0.944
40 H 0.056 0.944
41 H 0.052 0.948
42 H 0.058 0.942
43 H 0.066 0.934
44 H 0.048 0.952
45 H 0.125 0.875
46 H 0.137 0.863
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.768 -13.792 -14.045 20.042
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.281 4.281
2 C -0.104 4.104
3 C 0.079 3.921
4 N -0.147 5.147
5 C -0.453 4.453
6 H 0.127 0.873
7 C -0.159 4.159
8 N -0.468 5.468
9 Si 0.725 3.275
10 H -0.189 1.189
11 H -0.205 1.205
12 H -0.210 1.210
13 C 0.274 3.726
14 O -0.474 6.474
15 C -0.155 4.155
16 C -0.051 4.051
17 C -0.228 4.228
18 C 0.115 3.885
19 N -0.342 5.342
20 C -0.048 4.048
21 C 0.004 3.996
22 C -0.135 4.135
23 C -0.204 4.204
24 C -0.208 4.208
25 C -0.223 4.223
26 C -0.085 4.085
27 H 0.215 0.785
28 H 0.115 0.885
29 H 0.108 0.892
30 H 0.079 0.921
31 H 0.143 0.857
32 H 0.138 0.862
33 H 0.063 0.937
34 H 0.087 0.913
35 H 0.080 0.920
36 H 0.095 0.905
37 H 0.088 0.912
38 H 0.086 0.914
39 H 0.075 0.925
40 H 0.075 0.925
41 H 0.071 0.929
42 H 0.077 0.923
43 H 0.085 0.915
44 H 0.067 0.933
45 H 0.142 0.858
46 H 0.155 0.845
Dipole moment (debyes) X Y Z Total
from point charges 3.870 -13.821 -13.687 19.832
hybrid contribution -0.075 1.031 0.192 1.051
sum 3.795 -12.790 -13.495 18.976
Atomic orbital electron populations
1.24199 0.95286 1.06363 1.02223 1.22828 0.94002 0.95344 0.98181
1.19136 0.84673 1.02631 0.85617 1.43678 1.48819 1.12732 1.09433
1.19550 1.48767 0.85416 0.91601 0.87343 1.25244 0.94904 0.99002
0.96749 1.70316 1.25097 1.23428 1.27994 0.86320 0.80026 0.81256
0.79878 1.18921 1.20453 1.21019 1.17718 0.84527 0.82419 0.87938
1.90606 1.58516 1.79493 1.18785 1.19990 0.96743 1.00641 0.98145
1.20872 0.95456 0.92463 0.96327 1.20518 1.00747 1.03468 0.98069
1.17813 0.93667 0.88471 0.88535 1.46198 1.20933 1.38259 1.28798
1.21589 0.86249 0.94778 1.02222 1.21519 0.92908 0.98447 0.86701
1.21601 0.99960 0.96624 0.95297 1.21798 0.99685 1.01021 0.97890
1.22056 1.02382 0.94732 1.01615 1.20689 0.97931 1.00593 1.03073
1.21530 0.99161 0.95331 0.92486 0.78492 0.88499 0.89198 0.92068
0.85676 0.86227 0.93743 0.91273 0.92013 0.90531 0.91237 0.91381
0.92454 0.92515 0.92903 0.92281 0.91547 0.93256 0.85776 0.84517
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 17.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.26 -5.57 19.24 29.55 0.57 -5.00 16
2 C -0.10 -2.34 9.63 -37.12 -0.36 -2.70 16
3 C 0.20 4.61 4.80 -6.83 -0.03 4.58 16
4 N -0.43 -11.22 2.68 -119.16 -0.32 -11.54 16
5 C -0.33 -9.23 9.09 -15.00 -0.14 -9.37 16
6 H 0.11 3.27 7.43 -52.49 -0.39 2.88 16
7 C 0.05 1.26 5.01 -17.45 -0.09 1.17 16
8 N -0.83 -21.61 9.03 55.50 0.50 -21.11 16
9 Si 0.90 20.51 29.68 -169.99 -5.04 15.46 16
10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16
11 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16
12 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16
13 C 0.48 12.39 7.29 -12.53 -0.09 12.30 16
14 O -0.59 -17.06 16.53 5.25 0.09 -16.97 16
15 C -0.15 -3.10 5.40 -104.95 -0.57 -3.67 16
16 C -0.03 -0.57 9.62 -39.21 -0.38 -0.94 16
17 C -0.21 -3.05 9.18 -39.45 -0.36 -3.41 16
18 C 0.22 3.00 5.39 -83.84 -0.45 2.55 16
19 N -0.63 -6.83 2.86 -179.62 -0.51 -7.35 16
20 C 0.09 0.80 10.22 59.85 0.61 1.41 16
21 C 0.13 1.15 4.99 -4.04 -0.02 1.13 16
22 C -0.11 -1.00 3.13 -90.61 -0.28 -1.28 16
23 C -0.15 -1.05 9.19 37.16 0.34 -0.71 16
24 C -0.15 -1.59 7.63 37.16 0.28 -1.31 16
25 C -0.20 -2.97 7.09 -39.45 -0.28 -3.25 16
26 C -0.07 -1.19 7.33 -39.21 -0.29 -1.47 16
27 H 0.20 3.44 7.80 -54.09 -0.42 3.02 16
28 H 0.10 2.32 6.59 -51.93 -0.34 1.98 16
29 H 0.09 1.80 3.79 -51.93 -0.20 1.60 16
30 H 0.27 6.59 8.31 -40.82 -0.34 6.26 16
31 H 0.13 2.26 8.05 -52.49 -0.42 1.84 16
32 H 0.12 1.47 6.11 -52.49 -0.32 1.15 16
33 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16
34 H 0.07 0.58 6.17 -51.93 -0.32 0.26 16
35 H 0.06 0.41 7.89 -51.93 -0.41 0.00 16
36 H 0.08 0.73 6.18 -51.93 -0.32 0.41 16
37 H 0.07 0.51 7.89 -51.93 -0.41 0.10 16
38 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16
39 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16
40 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16
41 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16
42 H 0.06 0.63 6.63 -51.93 -0.34 0.28 16
43 H 0.07 0.84 5.85 -51.93 -0.30 0.53 16
44 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16
45 H 0.12 1.59 4.34 -52.48 -0.23 1.36 16
46 H 0.14 2.57 4.65 -52.49 -0.24 2.33 16
LS Contribution 362.86 15.07 5.47 5.47
Total: -1.00 -31.86 362.86 -7.70 -39.56
By element:
Atomic # 1 Polarization: 12.78 SS G_CDS: -6.35 Total: 6.43 kcal
Atomic # 6 Polarization: -8.43 SS G_CDS: -1.53 Total: -9.96 kcal
Atomic # 7 Polarization: -39.66 SS G_CDS: -0.33 Total: -39.99 kcal
Atomic # 8 Polarization: -17.06 SS G_CDS: 0.09 Total: -16.97 kcal
Atomic # 14 Polarization: 20.51 SS G_CDS: -5.04 Total: 15.46 kcal
Total LS contribution 5.47 Total: 5.47 kcal
Total: -31.86 -7.70 -39.56 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000491013105.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 129.036 kcal
(2) G-P(sol) polarization free energy of solvation -31.862 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.174 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.696 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.558 kcal
(6) G-S(sol) free energy of system = (1) + (5) 89.478 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds