Wall clock time and date at job start Tue Mar 31 2020 11:28:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47298 * 276.92483 * 3 2 1 5 5 C 1.36911 * 120.00236 * 288.74094 * 4 3 2 6 6 H 1.07999 * 119.99919 * 165.65477 * 5 4 3 7 7 C 1.39009 * 119.99628 * 345.65248 * 5 4 3 8 8 N 1.31393 * 120.00319 * 36.86987 * 7 5 4 9 9 Si 1.86801 * 120.00093 * 216.87012 * 7 5 4 10 10 H 1.48506 * 109.46994 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47495 * 120.00242 * 9 7 5 12 12 H 1.48508 * 109.47202 * 240.00448 * 9 7 5 13 13 C 1.34774 * 119.99927 * 108.73352 * 4 3 2 14 14 O 1.21635 * 120.00521 * 186.49214 * 13 4 3 15 15 C 1.47413 * 120.00221 * 6.49481 * 13 4 3 16 16 C 1.39857 * 120.07994 * 140.86579 * 15 13 4 17 17 C 1.37594 * 119.92705 * 180.02562 * 16 15 13 18 18 C 1.39226 * 120.07308 * 0.02562 * 17 16 15 19 19 N 1.39064 * 119.92493 * 179.97438 * 18 17 16 20 20 C 1.46497 * 119.99548 * 0.02562 * 19 18 17 21 21 C 1.46498 * 120.00130 * 179.97438 * 19 18 17 22 22 C 1.53003 * 109.46769 * 90.00425 * 21 19 18 23 23 C 1.53002 * 109.46872 * 175.00033 * 22 21 19 24 24 C 1.53007 * 109.47106 * 294.99732 * 22 21 19 25 25 C 1.39232 * 120.15246 * 0.25208 * 18 17 16 26 26 C 1.37593 * 120.07601 * 359.45012 * 25 18 17 27 27 H 4.40643 * 5.51403 * 179.97438 * 4 1 2 28 28 H 1.09006 * 109.47028 * 156.92666 * 3 2 1 29 29 H 1.09000 * 109.47228 * 36.93256 * 3 2 1 30 30 H 0.96996 * 120.00032 * 179.97438 * 8 7 5 31 31 H 1.07999 * 120.03169 * 0.02562 * 16 15 13 32 32 H 1.08002 * 119.95979 * 180.02562 * 17 16 15 33 33 H 1.08999 * 109.47514 * 269.99760 * 20 19 18 34 34 H 1.09004 * 109.47387 * 30.00161 * 20 19 18 35 35 H 1.09000 * 109.46902 * 149.99918 * 20 19 18 36 36 H 1.08998 * 109.47173 * 330.00216 * 21 19 18 37 37 H 1.08997 * 109.47097 * 210.00490 * 21 19 18 38 38 H 1.08991 * 109.47294 * 54.99924 * 22 21 19 39 39 H 1.08998 * 109.46929 * 60.00088 * 23 22 21 40 40 H 1.09005 * 109.47128 * 179.97438 * 23 22 21 41 41 H 1.09003 * 109.47035 * 299.99875 * 23 22 21 42 42 H 1.09000 * 109.46638 * 300.00440 * 24 22 21 43 43 H 1.08997 * 109.46852 * 60.00057 * 24 22 21 44 44 H 1.08995 * 109.47030 * 180.02562 * 24 22 21 45 45 H 1.08005 * 119.96575 * 179.72467 * 25 18 17 46 46 H 1.07999 * 120.04364 * 180.25348 * 26 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.1656 1.3711 5 6 3.0030 0.8558 2.2733 6 1 3.1434 0.6667 3.3272 7 6 2.6890 2.1362 1.8325 8 7 1.8577 2.2999 0.8282 9 14 3.4487 3.6242 2.6681 10 1 4.3436 3.1732 3.7641 11 1 4.2334 4.4021 1.6761 12 1 2.3725 4.4801 3.2290 13 6 3.7130 -1.3242 1.7444 14 8 4.0113 -1.5074 2.9093 15 6 3.9844 -2.3695 0.7411 16 6 5.1683 -3.1113 0.8042 17 6 5.4187 -4.0859 -0.1342 18 6 4.4952 -4.3335 -1.1463 19 7 4.7516 -5.3189 -2.0935 20 6 5.9921 -6.0953 -2.0253 21 6 3.7808 -5.5812 -3.1588 22 6 4.0980 -4.6974 -4.3668 23 6 3.1632 -5.0591 -5.5228 24 6 3.8983 -3.2279 -3.9901 25 6 3.3182 -3.5930 -1.2156 26 6 3.0587 -2.6211 -0.2768 27 1 -1.0500 0.0002 0.0001 28 1 3.0089 0.9463 -0.4028 29 1 3.0097 -0.8206 -0.6175 30 1 1.6383 3.1934 0.5209 31 1 5.8852 -2.9194 1.5888 32 1 6.3326 -4.6594 -0.0857 33 1 6.7672 -5.5934 -2.6044 34 1 6.3115 -6.1793 -0.9866 35 1 5.8204 -7.0909 -2.4343 36 1 2.7767 -5.3575 -2.7985 37 1 3.8366 -6.6298 -3.4511 38 1 5.1320 -4.8569 -4.6722 39 1 2.1292 -4.8995 -5.2174 40 1 3.3889 -4.4291 -6.3833 41 1 3.3055 -6.1059 -5.7912 42 1 2.8642 -3.0685 -3.6847 43 1 4.5642 -2.9703 -3.1665 44 1 4.1239 -2.5984 -4.8508 45 1 2.6059 -3.7846 -2.0046 46 1 2.1436 -2.0498 -0.3287 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491013105.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:28:17 Heat of formation + Delta-G solvation = 72.209622 kcal Electronic energy + Delta-G solvation = -26511.405456 eV Core-core repulsion = 22982.647121 eV Total energy + Delta-G solvation = -3528.758335 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.34591 -40.07921 -37.73219 -37.14127 -35.33826 -34.03393 -33.10926 -32.00664 -31.09402 -28.50015 -28.16262 -27.91902 -27.06931 -25.53543 -23.40035 -22.61392 -21.32891 -20.47276 -19.82669 -18.65083 -18.15109 -17.96754 -16.87484 -16.61146 -16.08181 -15.99798 -15.89750 -15.86770 -15.30753 -14.91550 -14.85033 -14.51435 -14.13336 -14.06410 -13.86016 -13.74960 -13.56232 -13.26191 -13.14842 -12.92466 -12.89419 -12.65351 -12.49682 -12.38563 -12.13584 -11.99373 -11.87992 -11.68299 -11.28889 -11.17590 -11.00925 -10.65109 -10.54827 -10.25206 -10.03018 -9.74782 -8.46428 -8.13509 -5.80623 0.32422 0.53733 1.32185 1.40125 1.54067 1.97496 2.16284 2.23800 2.33642 2.39471 2.83241 3.00418 3.35789 3.84424 3.94560 3.96771 4.04823 4.07012 4.10933 4.21273 4.41871 4.48426 4.52129 4.64294 4.65606 4.69970 4.77314 4.79044 4.86143 4.93166 4.99334 5.00625 5.08549 5.13030 5.15897 5.31194 5.31911 5.37190 5.43613 5.45756 5.49049 5.54160 5.69439 5.83643 6.06415 6.41667 6.45463 6.57345 7.13132 7.18199 7.41466 8.02265 8.51596 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017559 B = 0.003811 C = 0.003393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.260607 B = 7345.046296 C = 8251.064518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.143 4.143 3 C 0.209 3.791 4 N -0.440 5.440 5 C -0.376 4.376 6 H 0.071 0.929 7 C 0.026 3.974 8 N -0.837 5.837 9 Si 0.965 3.035 10 H -0.280 1.280 11 H -0.263 1.263 12 H -0.273 1.273 13 C 0.473 3.527 14 O -0.641 6.641 15 C -0.189 4.189 16 C -0.037 4.037 17 C -0.201 4.201 18 C 0.236 3.764 19 N -0.623 5.623 20 C 0.085 3.915 21 C 0.120 3.880 22 C -0.107 4.107 23 C -0.143 4.143 24 C -0.152 4.152 25 C -0.194 4.194 26 C -0.067 4.067 27 H 0.234 0.766 28 H 0.080 0.920 29 H 0.116 0.884 30 H 0.276 0.724 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.053 0.947 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.074 0.926 37 H 0.098 0.902 38 H 0.070 0.930 39 H 0.057 0.943 40 H 0.056 0.944 41 H 0.067 0.933 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.050 0.950 45 H 0.149 0.851 46 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.752 -15.610 -17.177 23.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C -0.145 4.145 3 C 0.088 3.912 4 N -0.156 5.156 5 C -0.502 4.502 6 H 0.089 0.911 7 C -0.182 4.182 8 N -0.471 5.471 9 Si 0.788 3.212 10 H -0.205 1.205 11 H -0.188 1.188 12 H -0.198 1.198 13 C 0.266 3.734 14 O -0.531 6.531 15 C -0.195 4.195 16 C -0.057 4.057 17 C -0.223 4.223 18 C 0.131 3.869 19 N -0.331 5.331 20 C -0.057 4.057 21 C -0.002 4.002 22 C -0.127 4.127 23 C -0.201 4.201 24 C -0.209 4.209 25 C -0.216 4.216 26 C -0.086 4.086 27 H 0.251 0.749 28 H 0.098 0.902 29 H 0.133 0.867 30 H 0.087 0.913 31 H 0.132 0.868 32 H 0.168 0.832 33 H 0.072 0.928 34 H 0.089 0.911 35 H 0.107 0.893 36 H 0.092 0.908 37 H 0.116 0.884 38 H 0.089 0.911 39 H 0.076 0.924 40 H 0.075 0.925 41 H 0.087 0.913 42 H 0.074 0.926 43 H 0.062 0.938 44 H 0.069 0.931 45 H 0.166 0.834 46 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.841 -15.660 -16.900 23.358 hybrid contribution -0.081 1.430 1.007 1.751 sum 3.760 -14.230 -15.892 21.661 Atomic orbital electron populations 1.25083 0.96244 1.04625 1.00387 1.23083 0.94609 0.96961 0.99845 1.19113 0.85167 1.02701 0.84262 1.43821 1.49072 1.12492 1.10244 1.19334 1.52478 0.87542 0.90833 0.91064 1.25850 0.94239 1.00430 0.97664 1.70356 1.24234 1.24370 1.28154 0.85378 0.79052 0.77973 0.78807 1.20509 1.18754 1.19838 1.18602 0.83308 0.83153 0.88384 1.90529 1.60470 1.80799 1.21254 1.19659 0.99328 1.01417 0.99051 1.20871 0.94559 0.93207 0.97109 1.20711 1.02003 1.02461 0.97139 1.17897 0.92556 0.88092 0.88331 1.46514 1.22011 1.36732 1.27852 1.21850 0.85190 0.95819 1.02823 1.21763 0.92225 1.00180 0.86044 1.21527 1.00546 0.94974 0.95665 1.21765 0.99191 1.02000 0.97106 1.22051 1.01554 0.96449 1.00879 1.20832 0.98797 0.99469 1.02477 1.21356 0.98211 0.96420 0.92656 0.74949 0.90231 0.86686 0.91308 0.86804 0.83209 0.92849 0.91130 0.89321 0.90790 0.88423 0.91146 0.92434 0.92522 0.91349 0.92566 0.93792 0.93050 0.83400 0.85656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -10.27 19.24 74.32 1.43 -8.84 16 2 C -0.14 -6.72 9.63 31.13 0.30 -6.42 16 3 C 0.21 9.98 4.80 84.58 0.41 10.39 16 4 N -0.44 -24.52 2.68 -649.17 -1.74 -26.26 16 5 C -0.38 -22.62 9.09 84.09 0.76 -21.85 16 6 H 0.07 4.70 7.43 -2.91 -0.02 4.68 16 7 C 0.03 1.39 5.01 84.94 0.43 1.81 16 8 N -0.84 -43.96 9.03 21.67 0.20 -43.76 16 9 Si 0.96 43.27 29.68 68.60 2.04 45.30 16 10 H -0.28 -13.18 7.11 99.48 0.71 -12.47 16 11 H -0.26 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.27 -11.72 7.11 99.48 0.71 -11.02 16 13 C 0.47 26.12 7.29 86.66 0.63 26.75 16 14 O -0.64 -40.39 16.53 -4.14 -0.07 -40.46 16 15 C -0.19 -8.23 5.40 -20.07 -0.11 -8.33 16 16 C -0.04 -1.40 9.62 22.51 0.22 -1.18 16 17 C -0.20 -5.65 9.18 22.36 0.21 -5.44 16 18 C 0.24 6.00 5.39 38.47 0.21 6.20 16 19 N -0.62 -11.08 2.86 -722.18 -2.06 -13.14 16 20 C 0.09 1.06 10.22 127.77 1.31 2.36 16 21 C 0.12 1.66 4.99 86.38 0.43 2.09 16 22 C -0.11 -1.47 3.13 -10.79 -0.03 -1.51 16 23 C -0.14 -1.52 9.19 71.98 0.66 -0.86 16 24 C -0.15 -2.87 7.63 71.98 0.55 -2.32 16 25 C -0.19 -5.46 7.09 22.36 0.16 -5.30 16 26 C -0.07 -2.46 7.33 22.51 0.17 -2.30 16 27 H 0.23 7.59 7.80 -4.42 -0.03 7.55 16 28 H 0.08 3.99 6.59 -2.38 -0.02 3.97 16 29 H 0.12 4.81 3.79 -2.39 -0.01 4.80 16 30 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 31 H 0.11 4.38 8.05 -2.91 -0.02 4.36 16 32 H 0.15 3.25 6.11 -2.91 -0.02 3.24 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.90 6.17 -2.38 -0.01 0.88 16 35 H 0.09 0.69 7.89 -2.39 -0.02 0.67 16 36 H 0.07 1.11 6.18 -2.39 -0.01 1.09 16 37 H 0.10 0.90 7.89 -2.39 -0.02 0.88 16 38 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 39 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 40 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 41 H 0.07 0.54 8.14 -2.39 -0.02 0.52 16 42 H 0.06 1.08 6.63 -2.39 -0.02 1.06 16 43 H 0.04 1.02 5.85 -2.39 -0.01 1.01 16 44 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.15 3.43 4.34 -2.91 -0.01 3.42 16 46 H 0.13 4.85 4.65 -2.91 -0.01 4.84 16 Total: -1.00 -74.63 362.86 7.07 -67.56 By element: Atomic # 1 Polarization: 24.52 SS G_CDS: 0.99 Total: 25.51 kcal Atomic # 6 Polarization: -22.46 SS G_CDS: 7.72 Total: -14.75 kcal Atomic # 7 Polarization: -79.56 SS G_CDS: -3.61 Total: -83.16 kcal Atomic # 8 Polarization: -40.39 SS G_CDS: -0.07 Total: -40.46 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 2.04 Total: 45.30 kcal Total: -74.63 7.07 -67.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491013105.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.772 kcal (2) G-P(sol) polarization free energy of solvation -74.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.563 kcal (6) G-S(sol) free energy of system = (1) + (5) 72.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds