Wall clock time and date at job start Tue Mar 31 2020 11:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46760 * 211.85914 * 3 2 1 5 5 C 1.36934 * 119.99697 * 269.99790 * 4 3 2 6 6 H 1.07999 * 120.00107 * 189.05921 * 5 4 3 7 7 C 1.38819 * 120.00441 * 9.07070 * 5 4 3 8 8 N 1.31613 * 119.99882 * 25.26246 * 7 5 4 9 9 Si 1.86801 * 119.99993 * 205.27547 * 7 5 4 10 10 H 1.48500 * 109.47105 * 59.98895 * 9 7 5 11 11 H 1.48495 * 109.46992 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46782 * 299.99757 * 9 7 5 13 13 C 1.46497 * 120.00077 * 90.00280 * 4 3 2 14 14 C 1.50698 * 109.47134 * 91.14202 * 13 4 3 15 15 O 1.21286 * 119.99891 * 0.02562 * 14 13 4 16 16 N 1.34774 * 120.00206 * 179.97438 * 14 13 4 17 17 C 1.46497 * 120.00068 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.47412 * 324.99814 * 17 16 14 19 19 C 1.50709 * 109.46956 * 204.99808 * 17 16 14 20 20 C 1.38239 * 119.99796 * 139.99636 * 19 17 16 21 21 C 1.38233 * 119.99671 * 179.97438 * 20 19 17 22 22 C 1.38235 * 120.00240 * 359.96144 * 21 20 19 23 23 C 1.38233 * 119.99675 * 359.97438 * 22 21 20 24 24 C 1.38231 * 119.99814 * 319.98017 * 19 17 16 25 25 C 1.52997 * 109.47532 * 85.00164 * 17 16 14 26 26 C 1.53002 * 109.47482 * 179.97438 * 25 17 16 27 27 C 1.53005 * 109.47056 * 299.99885 * 25 17 16 28 28 H 4.40645 * 5.51445 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47105 * 91.86567 * 3 2 1 30 30 H 1.08995 * 109.47139 * 331.85799 * 3 2 1 31 31 H 0.97004 * 119.99903 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46775 * 331.14549 * 13 4 3 33 33 H 1.08994 * 109.47307 * 211.14377 * 13 4 3 34 34 H 0.97005 * 119.99849 * 0.02562 * 16 14 13 35 35 H 1.07999 * 119.99775 * 359.97438 * 20 19 17 36 36 H 1.07997 * 119.99557 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.99792 * 179.71676 * 22 21 20 38 38 H 1.08008 * 119.99509 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.00574 * 359.97438 * 24 19 17 40 40 H 1.09001 * 109.47058 * 59.99433 * 25 17 16 41 41 H 1.08992 * 109.47208 * 59.99690 * 26 25 17 42 42 H 1.09005 * 109.47084 * 179.97438 * 26 25 17 43 43 H 1.08997 * 109.46807 * 299.99824 * 26 25 17 44 44 H 1.09000 * 109.46794 * 59.99555 * 27 25 17 45 45 H 1.08991 * 109.47247 * 179.97438 * 27 25 17 46 46 H 1.09004 * 109.46841 * 300.00214 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1741 0.7291 5 6 3.3614 2.3484 0.0625 6 1 3.8565 3.1668 0.5640 7 6 2.9557 2.4871 -1.2578 8 7 1.9607 1.7602 -1.7203 9 14 3.8223 3.7050 -2.3781 10 1 5.2600 3.3475 -2.4800 11 1 3.2049 3.6618 -3.7279 12 1 3.6912 5.0736 -1.8169 13 6 3.3780 1.0911 2.1712 14 6 4.8094 0.6883 2.4159 15 8 5.5525 0.4905 1.4780 16 7 5.2640 0.5489 3.6769 17 6 6.6557 0.1578 3.9148 18 1 6.9761 -0.5360 3.1376 19 6 6.7667 -0.5100 5.2613 20 6 7.5817 -1.6152 5.4196 21 6 7.6840 -2.2274 6.6547 22 6 6.9718 -1.7339 7.7318 23 6 6.1578 -0.6279 7.5738 24 6 6.0537 -0.0170 6.3381 25 6 7.5467 1.4012 3.8873 26 6 9.0000 0.9929 4.1364 27 6 7.4341 2.0793 2.5203 28 1 -1.0502 -0.0002 -0.0004 29 1 3.0093 0.0343 -1.0271 30 1 3.0097 -0.9053 0.4847 31 1 1.6775 1.8569 -2.6430 32 1 2.7115 0.3488 2.6104 33 1 3.1908 2.0629 2.6279 34 1 4.6698 0.7074 4.4271 35 1 8.1386 -2.0004 4.5782 36 1 8.3204 -3.0911 6.7782 37 1 7.0481 -2.2150 8.6957 38 1 5.6010 -0.2425 8.4153 39 1 5.4174 0.8468 6.2147 40 1 7.2263 2.0951 4.6645 41 1 9.3207 0.2989 3.3595 42 1 9.6349 1.8788 4.1163 43 1 9.0799 0.5102 5.1103 44 1 6.3986 2.3702 2.3434 45 1 8.0685 2.9653 2.5009 46 1 7.7544 1.3854 1.7431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000491675882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:06 Heat of formation + Delta-G solvation = 73.733039 kcal Electronic energy + Delta-G solvation = -26310.026164 eV Core-core repulsion = 22781.333889 eV Total energy + Delta-G solvation = -3528.692275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -40.21947 -38.71450 -36.39477 -35.35487 -33.08032 -31.45773 -31.35899 -31.13846 -30.88607 -27.56923 -26.77082 -26.01332 -25.33898 -22.91209 -22.02473 -21.63104 -19.93118 -19.62295 -17.51971 -17.40599 -16.36365 -16.22175 -15.80636 -15.31277 -15.16030 -14.89159 -14.64461 -14.09457 -13.77192 -13.57370 -13.50574 -13.22971 -13.09589 -12.62036 -12.52072 -12.41595 -12.24651 -11.88561 -11.61584 -11.38872 -11.30264 -11.20164 -11.08053 -10.93388 -10.64796 -10.56157 -10.52603 -10.26005 -9.90525 -9.27641 -9.08284 -8.94207 -8.89685 -8.68665 -8.53166 -8.30360 -7.06277 -5.75759 -3.09529 1.16911 1.22873 3.41598 3.42980 3.50540 3.52332 3.55432 3.73023 4.23054 4.44535 4.52951 4.60694 4.71551 4.81588 4.94080 5.03394 5.10629 5.27827 5.33940 5.36199 5.42146 5.52296 5.62214 5.74365 5.79194 5.80485 5.84895 5.92274 5.96566 6.06816 6.09540 6.10815 6.25508 6.26496 6.29395 6.33395 6.40003 6.51434 6.72175 6.79155 6.82025 6.94331 7.35375 7.45632 7.76892 8.00744 8.26087 8.98843 9.12612 9.24602 9.78910 10.20268 11.27680 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.003607 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.253074 B = 7761.610245 C = 8889.478067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.304 4.304 2 C -0.090 4.090 3 C 0.271 3.729 4 N -0.563 5.563 5 C -0.257 4.257 6 H 0.074 0.926 7 C 0.007 3.993 8 N -0.887 5.887 9 Si 0.896 3.104 10 H -0.283 1.283 11 H -0.292 1.292 12 H -0.285 1.285 13 C 0.133 3.867 14 C 0.479 3.521 15 O -0.512 6.512 16 N -0.741 5.741 17 C 0.189 3.811 18 H 0.092 0.908 19 C -0.078 4.078 20 C -0.109 4.109 21 C -0.119 4.119 22 C -0.126 4.126 23 C -0.117 4.117 24 C -0.114 4.114 25 C -0.097 4.097 26 C -0.145 4.145 27 C -0.139 4.139 28 H 0.190 0.810 29 H 0.099 0.901 30 H 0.036 0.964 31 H 0.255 0.745 32 H 0.069 0.931 33 H 0.077 0.923 34 H 0.392 0.608 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.122 0.878 40 H 0.066 0.934 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.054 0.946 44 H 0.063 0.937 45 H 0.041 0.959 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.692 -5.850 18.461 21.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.323 4.323 2 C -0.093 4.093 3 C 0.146 3.854 4 N -0.281 5.281 5 C -0.385 4.385 6 H 0.092 0.908 7 C -0.192 4.192 8 N -0.530 5.530 9 Si 0.725 3.275 10 H -0.210 1.210 11 H -0.218 1.218 12 H -0.211 1.211 13 C 0.001 3.999 14 C 0.264 3.736 15 O -0.385 6.385 16 N -0.396 5.396 17 C 0.083 3.917 18 H 0.109 0.891 19 C -0.079 4.079 20 C -0.127 4.127 21 C -0.137 4.137 22 C -0.144 4.144 23 C -0.135 4.135 24 C -0.133 4.133 25 C -0.117 4.117 26 C -0.203 4.203 27 C -0.196 4.196 28 H 0.207 0.793 29 H 0.117 0.883 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.087 0.913 33 H 0.095 0.905 34 H 0.226 0.774 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.140 0.860 40 H 0.085 0.915 41 H 0.074 0.926 42 H 0.072 0.928 43 H 0.073 0.927 44 H 0.082 0.918 45 H 0.060 0.940 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.145 -5.959 17.492 21.081 hybrid contribution -0.087 0.856 -0.231 0.891 sum 10.059 -5.103 17.261 20.619 Atomic orbital electron populations 1.24148 0.95276 1.06162 1.06751 1.24230 0.95175 0.94984 0.94893 1.17806 0.82628 0.86505 0.98474 1.43614 1.73707 1.09505 1.01229 1.19047 1.32720 0.92179 0.94553 0.90789 1.24729 0.97103 0.99176 0.98184 1.70162 1.23910 1.43373 1.15572 0.86464 0.80179 0.80636 0.80200 1.20987 1.21784 1.21129 1.20661 0.90342 1.00905 0.87990 1.23141 0.92781 0.76160 0.81565 1.90655 1.57963 1.47640 1.42211 1.46498 1.11086 1.73165 1.08874 1.19809 0.83358 0.95468 0.93048 0.89051 1.20034 0.96917 0.95641 0.95269 1.21041 0.98752 0.95278 0.97654 1.21126 0.99690 0.99892 0.92960 1.21137 0.97526 0.96945 0.98789 1.21125 0.98926 0.96244 0.97252 1.20964 0.99658 1.00097 0.92559 1.21488 0.94872 0.96404 0.98934 1.21835 0.95715 1.01322 1.01413 1.21872 1.02529 0.99569 0.95614 0.79304 0.88345 0.94598 0.93471 0.91295 0.90484 0.77395 0.85958 0.86134 0.86304 0.86099 0.86027 0.91545 0.92614 0.92758 0.92693 0.91793 0.93992 0.91818 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.30 -6.99 19.25 29.55 0.57 -6.42 16 2 C -0.09 -2.22 11.45 -37.12 -0.43 -2.64 16 3 C 0.27 6.66 5.46 -6.82 -0.04 6.62 16 4 N -0.56 -13.81 1.98 -177.95 -0.35 -14.16 16 5 C -0.26 -6.99 9.69 -15.06 -0.15 -7.13 16 6 H 0.07 1.99 7.95 -52.49 -0.42 1.57 16 7 C 0.01 0.18 4.88 -17.43 -0.09 0.10 16 8 N -0.89 -25.44 9.18 55.49 0.51 -24.93 16 9 Si 0.90 22.20 29.62 -169.99 -5.04 17.17 16 10 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 11 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 12 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.13 2.57 6.15 -5.20 -0.03 2.54 16 14 C 0.48 8.71 6.25 -10.99 -0.07 8.64 16 15 O -0.51 -11.33 13.55 5.55 0.08 -11.25 16 16 N -0.74 -10.15 4.91 -54.93 -0.27 -10.42 16 17 C 0.19 2.42 2.05 -69.08 -0.14 2.28 16 18 H 0.09 1.37 7.44 -51.93 -0.39 0.98 16 19 C -0.08 -0.84 4.05 -104.62 -0.42 -1.27 16 20 C -0.11 -1.10 8.71 -39.58 -0.34 -1.44 16 21 C -0.12 -1.05 10.05 -39.58 -0.40 -1.44 16 22 C -0.13 -1.06 10.05 -39.58 -0.40 -1.46 16 23 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 24 C -0.11 -1.11 9.05 -39.58 -0.36 -1.47 16 25 C -0.10 -1.22 2.68 -90.62 -0.24 -1.46 16 26 C -0.15 -1.56 8.79 37.16 0.33 -1.24 16 27 C -0.14 -2.16 7.72 37.16 0.29 -1.87 16 28 H 0.19 3.63 7.80 -54.08 -0.42 3.21 16 29 H 0.10 2.69 6.35 -51.93 -0.33 2.36 16 30 H 0.04 0.80 8.07 -51.93 -0.42 0.38 16 31 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.07 1.20 8.06 -51.93 -0.42 0.78 16 33 H 0.08 1.40 8.05 -51.93 -0.42 0.98 16 34 H 0.39 4.36 6.87 -40.82 -0.28 4.08 16 35 H 0.12 1.14 8.04 -52.49 -0.42 0.72 16 36 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 37 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 38 H 0.12 0.81 8.06 -52.48 -0.42 0.38 16 39 H 0.12 1.03 6.92 -52.49 -0.36 0.67 16 40 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.05 0.55 6.64 -51.93 -0.34 0.21 16 44 H 0.06 1.16 5.77 -51.93 -0.30 0.86 16 45 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 1.11 7.53 -51.93 -0.39 0.71 16 LS Contribution 377.42 15.07 5.69 5.69 Total: -1.00 -32.10 377.42 -8.71 -40.81 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -7.01 Total: 6.19 kcal Atomic # 6 Polarization: -6.77 SS G_CDS: -2.32 Total: -9.08 kcal Atomic # 7 Polarization: -49.40 SS G_CDS: -0.11 Total: -49.52 kcal Atomic # 8 Polarization: -11.33 SS G_CDS: 0.08 Total: -11.25 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.04 Total: 17.17 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -32.10 -8.71 -40.81 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491675882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.540 kcal (2) G-P(sol) polarization free energy of solvation -32.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.733 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds