Wall clock time and date at job start Tue Mar 31 2020 11:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47205 * 179.97438 * 2 1 4 4 N 1.46507 * 109.46760 * 211.85914 * 3 2 1 5 5 C 1.36934 * 119.99697 * 269.99790 * 4 3 2 6 6 H 1.07999 * 120.00107 * 189.05921 * 5 4 3 7 7 C 1.38819 * 120.00441 * 9.07070 * 5 4 3 8 8 N 1.31613 * 119.99882 * 25.26246 * 7 5 4 9 9 Si 1.86801 * 119.99993 * 205.27547 * 7 5 4 10 10 H 1.48500 * 109.47105 * 59.98895 * 9 7 5 11 11 H 1.48495 * 109.46992 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.46782 * 299.99757 * 9 7 5 13 13 C 1.46497 * 120.00077 * 90.00280 * 4 3 2 14 14 C 1.50698 * 109.47134 * 91.14202 * 13 4 3 15 15 O 1.21286 * 119.99891 * 0.02562 * 14 13 4 16 16 N 1.34774 * 120.00206 * 179.97438 * 14 13 4 17 17 C 1.46497 * 120.00068 * 180.02562 * 16 14 13 18 18 H 1.09001 * 109.47412 * 324.99814 * 17 16 14 19 19 C 1.50709 * 109.46956 * 204.99808 * 17 16 14 20 20 C 1.38239 * 119.99796 * 139.99636 * 19 17 16 21 21 C 1.38233 * 119.99671 * 179.97438 * 20 19 17 22 22 C 1.38235 * 120.00240 * 359.96144 * 21 20 19 23 23 C 1.38233 * 119.99675 * 359.97438 * 22 21 20 24 24 C 1.38231 * 119.99814 * 319.98017 * 19 17 16 25 25 C 1.52997 * 109.47532 * 85.00164 * 17 16 14 26 26 C 1.53002 * 109.47482 * 179.97438 * 25 17 16 27 27 C 1.53005 * 109.47056 * 299.99885 * 25 17 16 28 28 H 4.40645 * 5.51445 * 179.97438 * 4 1 2 29 29 H 1.09000 * 109.47105 * 91.86567 * 3 2 1 30 30 H 1.08995 * 109.47139 * 331.85799 * 3 2 1 31 31 H 0.97004 * 119.99903 * 180.02562 * 8 7 5 32 32 H 1.09003 * 109.46775 * 331.14549 * 13 4 3 33 33 H 1.08994 * 109.47307 * 211.14377 * 13 4 3 34 34 H 0.97005 * 119.99849 * 0.02562 * 16 14 13 35 35 H 1.07999 * 119.99775 * 359.97438 * 20 19 17 36 36 H 1.07997 * 119.99557 * 179.97438 * 21 20 19 37 37 H 1.07997 * 119.99792 * 179.71676 * 22 21 20 38 38 H 1.08008 * 119.99509 * 179.97438 * 23 22 21 39 39 H 1.07996 * 120.00574 * 359.97438 * 24 19 17 40 40 H 1.09001 * 109.47058 * 59.99433 * 25 17 16 41 41 H 1.08992 * 109.47208 * 59.99690 * 26 25 17 42 42 H 1.09005 * 109.47084 * 179.97438 * 26 25 17 43 43 H 1.08997 * 109.46807 * 299.99824 * 26 25 17 44 44 H 1.09000 * 109.46794 * 59.99555 * 27 25 17 45 45 H 1.08991 * 109.47247 * 179.97438 * 27 25 17 46 46 H 1.09004 * 109.46841 * 300.00214 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1741 0.7291 5 6 3.3614 2.3484 0.0625 6 1 3.8565 3.1668 0.5640 7 6 2.9557 2.4871 -1.2578 8 7 1.9607 1.7602 -1.7203 9 14 3.8223 3.7050 -2.3781 10 1 5.2600 3.3475 -2.4800 11 1 3.2049 3.6618 -3.7279 12 1 3.6912 5.0736 -1.8169 13 6 3.3780 1.0911 2.1712 14 6 4.8094 0.6883 2.4159 15 8 5.5525 0.4905 1.4780 16 7 5.2640 0.5489 3.6769 17 6 6.6557 0.1578 3.9148 18 1 6.9761 -0.5360 3.1376 19 6 6.7667 -0.5100 5.2613 20 6 7.5817 -1.6152 5.4196 21 6 7.6840 -2.2274 6.6547 22 6 6.9718 -1.7339 7.7318 23 6 6.1578 -0.6279 7.5738 24 6 6.0537 -0.0170 6.3381 25 6 7.5467 1.4012 3.8873 26 6 9.0000 0.9929 4.1364 27 6 7.4341 2.0793 2.5203 28 1 -1.0502 -0.0002 -0.0004 29 1 3.0093 0.0343 -1.0271 30 1 3.0097 -0.9053 0.4847 31 1 1.6775 1.8569 -2.6430 32 1 2.7115 0.3488 2.6104 33 1 3.1908 2.0629 2.6279 34 1 4.6698 0.7074 4.4271 35 1 8.1386 -2.0004 4.5782 36 1 8.3204 -3.0911 6.7782 37 1 7.0481 -2.2150 8.6957 38 1 5.6010 -0.2425 8.4153 39 1 5.4174 0.8468 6.2147 40 1 7.2263 2.0951 4.6645 41 1 9.3207 0.2989 3.3595 42 1 9.6349 1.8788 4.1163 43 1 9.0799 0.5102 5.1103 44 1 6.3986 2.3702 2.3434 45 1 8.0685 2.9653 2.5009 46 1 7.7544 1.3854 1.7431 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000491675882.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:19:05 Heat of formation + Delta-G solvation = 56.642055 kcal Electronic energy + Delta-G solvation = -26310.767285 eV Core-core repulsion = 22781.333889 eV Total energy + Delta-G solvation = -3529.433396 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -41.29480 -39.84634 -37.83975 -36.88086 -34.33153 -33.43484 -33.07872 -32.02276 -31.70106 -29.12028 -27.97326 -27.82389 -26.58278 -23.91654 -23.49363 -22.52908 -21.26874 -20.75045 -19.43308 -18.55085 -17.94264 -17.55471 -17.02134 -16.70712 -16.47417 -16.10146 -15.59914 -15.56118 -15.29904 -14.94872 -14.83076 -14.41367 -14.22853 -14.11710 -13.69979 -13.38086 -13.34512 -13.22879 -13.21992 -12.99982 -12.74222 -12.53535 -12.45753 -12.25160 -12.10496 -11.93221 -11.87767 -11.70883 -11.55391 -10.99120 -10.77640 -10.55197 -10.24027 -9.90386 -9.76984 -9.56783 -9.00850 -7.84697 -5.17855 0.44239 0.54283 1.42855 1.49084 1.55056 1.96855 2.20115 2.49060 2.55122 2.63232 2.93505 3.29340 3.61375 3.79012 3.94926 3.99445 4.09255 4.13765 4.20085 4.27199 4.32135 4.41384 4.55237 4.57346 4.66755 4.68553 4.74686 4.78999 4.84576 4.90218 4.98969 5.02141 5.12627 5.18221 5.20633 5.34585 5.37896 5.49433 5.56590 5.60588 5.62056 5.67324 5.69550 5.82993 6.14250 6.21227 6.77514 7.07893 7.39075 7.58055 7.82050 8.19126 9.16644 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.017266 B = 0.003607 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1621.253074 B = 7761.610245 C = 8889.478067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.287 4.287 2 C -0.131 4.131 3 C 0.278 3.722 4 N -0.579 5.579 5 C -0.258 4.258 6 H 0.071 0.929 7 C -0.042 4.042 8 N -0.907 5.907 9 Si 0.948 3.052 10 H -0.293 1.293 11 H -0.294 1.294 12 H -0.276 1.276 13 C 0.130 3.870 14 C 0.487 3.513 15 O -0.557 6.557 16 N -0.720 5.720 17 C 0.194 3.806 18 H 0.065 0.935 19 C -0.091 4.091 20 C -0.121 4.121 21 C -0.123 4.123 22 C -0.126 4.126 23 C -0.120 4.120 24 C -0.121 4.121 25 C -0.091 4.091 26 C -0.138 4.138 27 C -0.132 4.132 28 H 0.225 0.775 29 H 0.063 0.937 30 H 0.051 0.949 31 H 0.247 0.753 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.408 0.592 35 H 0.121 0.879 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.143 0.857 39 H 0.132 0.868 40 H 0.079 0.921 41 H 0.049 0.951 42 H 0.062 0.938 43 H 0.066 0.934 44 H 0.035 0.965 45 H 0.052 0.948 46 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.816 -5.995 21.550 24.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.306 4.306 2 C -0.134 4.134 3 C 0.153 3.847 4 N -0.298 5.298 5 C -0.387 4.387 6 H 0.088 0.912 7 C -0.238 4.238 8 N -0.553 5.553 9 Si 0.778 3.222 10 H -0.220 1.220 11 H -0.220 1.220 12 H -0.202 1.202 13 C -0.001 4.001 14 C 0.272 3.728 15 O -0.434 6.434 16 N -0.376 5.376 17 C 0.089 3.911 18 H 0.083 0.917 19 C -0.092 4.092 20 C -0.140 4.140 21 C -0.140 4.140 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.140 4.140 25 C -0.110 4.110 26 C -0.196 4.196 27 C -0.189 4.189 28 H 0.241 0.759 29 H 0.081 0.919 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.245 0.755 35 H 0.139 0.861 36 H 0.158 0.842 37 H 0.161 0.839 38 H 0.161 0.839 39 H 0.149 0.851 40 H 0.097 0.903 41 H 0.068 0.932 42 H 0.081 0.919 43 H 0.085 0.915 44 H 0.054 0.946 45 H 0.071 0.929 46 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges 10.278 -6.103 20.667 23.876 hybrid contribution -0.104 0.839 -1.037 1.338 sum 10.174 -5.265 19.630 22.728 Atomic orbital electron populations 1.24977 0.96224 1.04495 1.04882 1.24430 0.95771 0.96568 0.96585 1.17547 0.83142 0.87233 0.96816 1.43701 1.74266 1.08602 1.03204 1.19252 1.31482 0.92924 0.95029 0.91162 1.25303 0.97946 1.01207 0.99304 1.70295 1.25013 1.44920 1.15030 0.85622 0.78461 0.79474 0.78661 1.21993 1.22015 1.20194 1.20879 0.91296 1.02398 0.85509 1.22630 0.91999 0.75834 0.82384 1.90653 1.58815 1.49972 1.43922 1.46186 1.12045 1.71469 1.07865 1.19739 0.82190 0.95293 0.93867 0.91664 1.19819 0.98614 0.96497 0.94231 1.21153 0.98978 0.95358 0.98477 1.21391 0.99875 1.00312 0.92471 1.21502 0.96566 0.96624 0.99654 1.21430 0.98846 0.96092 0.97420 1.21121 0.99606 1.00552 0.92674 1.21435 0.96223 0.96182 0.97199 1.21767 0.94318 1.01653 1.01828 1.21772 1.00683 0.99654 0.96819 0.75864 0.91947 0.93060 0.94346 0.88998 0.89213 0.75510 0.86074 0.84244 0.83922 0.83880 0.85054 0.90307 0.93204 0.91868 0.91476 0.94619 0.92876 0.94403 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.29 -12.81 19.25 74.32 1.43 -11.38 16 2 C -0.13 -6.45 11.45 31.13 0.36 -6.10 16 3 C 0.28 13.98 5.46 84.57 0.46 14.45 16 4 N -0.58 -28.84 1.98 -716.90 -1.42 -30.26 16 5 C -0.26 -14.28 9.69 84.04 0.81 -13.46 16 6 H 0.07 3.85 7.95 -2.91 -0.02 3.82 16 7 C -0.04 -2.36 4.88 84.86 0.41 -1.95 16 8 N -0.91 -53.20 9.18 21.65 0.20 -53.00 16 9 Si 0.95 46.78 29.62 68.60 2.03 48.82 16 10 H -0.29 -14.73 7.11 99.48 0.71 -14.02 16 11 H -0.29 -14.47 7.11 99.48 0.71 -13.76 16 12 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 13 C 0.13 4.95 6.15 85.63 0.53 5.48 16 14 C 0.49 17.83 6.25 87.66 0.55 18.37 16 15 O -0.56 -25.57 13.55 -3.05 -0.04 -25.61 16 16 N -0.72 -19.26 4.91 -446.09 -2.19 -21.46 16 17 C 0.19 4.91 2.05 44.25 0.09 5.00 16 18 H 0.07 2.02 7.44 -2.39 -0.02 2.00 16 19 C -0.09 -1.83 4.05 -19.86 -0.08 -1.91 16 20 C -0.12 -2.26 8.71 22.27 0.19 -2.07 16 21 C -0.12 -1.84 10.05 22.27 0.22 -1.62 16 22 C -0.13 -1.68 10.05 22.27 0.22 -1.45 16 23 C -0.12 -1.67 10.05 22.27 0.22 -1.45 16 24 C -0.12 -2.03 9.05 22.27 0.20 -1.83 16 25 C -0.09 -2.21 2.68 -10.79 -0.03 -2.24 16 26 C -0.14 -2.81 8.79 71.98 0.63 -2.18 16 27 C -0.13 -4.20 7.72 71.98 0.56 -3.64 16 28 H 0.22 7.96 7.80 -4.41 -0.03 7.93 16 29 H 0.06 3.57 6.35 -2.39 -0.02 3.56 16 30 H 0.05 2.34 8.07 -2.39 -0.02 2.32 16 31 H 0.25 14.33 8.31 -92.71 -0.77 13.56 16 32 H 0.09 3.06 8.06 -2.39 -0.02 3.04 16 33 H 0.09 3.18 8.05 -2.39 -0.02 3.16 16 34 H 0.41 8.34 6.87 -92.70 -0.64 7.71 16 35 H 0.12 2.20 8.04 -2.91 -0.02 2.17 16 36 H 0.14 1.50 8.06 -2.91 -0.02 1.48 16 37 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 38 H 0.14 1.33 8.06 -2.91 -0.02 1.30 16 39 H 0.13 1.85 6.92 -2.91 -0.02 1.83 16 40 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 41 H 0.05 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 43 H 0.07 1.22 6.64 -2.39 -0.02 1.20 16 44 H 0.03 1.32 5.77 -2.39 -0.01 1.30 16 45 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 46 H 0.04 1.37 7.53 -2.38 -0.02 1.35 16 Total: -1.00 -70.98 377.42 5.69 -65.29 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: 0.33 Total: 24.19 kcal Atomic # 6 Polarization: -14.76 SS G_CDS: 6.79 Total: -7.97 kcal Atomic # 7 Polarization: -101.30 SS G_CDS: -3.41 Total: -104.71 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: -0.04 Total: -25.61 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.82 kcal Total: -70.98 5.69 -65.29 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000491675882.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.928 kcal (2) G-P(sol) polarization free energy of solvation -70.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.286 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds