Wall clock time and date at job start Tue Mar 31 2020 12:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 H 1.09003 * 109.47191 * 305.38040 * 3 2 1 5 5 C 1.52990 * 109.47330 * 185.37347 * 3 2 1 6 6 C 1.50704 * 109.47142 * 65.00410 * 5 3 2 7 7 C 1.38232 * 120.00192 * 89.99731 * 6 5 3 8 8 C 1.38234 * 120.00373 * 180.02562 * 7 6 5 9 9 C 1.38234 * 119.99691 * 0.02562 * 8 7 6 10 10 C 1.38240 * 120.00232 * 0.25198 * 9 8 7 11 11 C 1.38234 * 119.99871 * 270.02204 * 6 5 3 12 12 C 1.50707 * 109.46775 * 65.37505 * 3 2 1 13 13 O 1.21279 * 119.99859 * 34.96499 * 12 3 2 14 14 N 1.34772 * 119.99702 * 214.97074 * 12 3 2 15 15 C 1.46507 * 119.99726 * 174.90394 * 14 12 3 16 16 C 1.50699 * 109.46768 * 89.99812 * 15 14 12 17 17 H 1.07996 * 120.00633 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99740 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99940 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99970 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46792 * 90.00131 * 20 18 16 22 22 H 1.48501 * 109.47041 * 209.99645 * 20 18 16 23 23 H 1.48493 * 109.47051 * 329.99966 * 20 18 16 24 24 C 1.46499 * 120.00267 * 354.89926 * 14 12 3 25 25 C 1.53002 * 109.47027 * 94.77788 * 24 14 12 26 26 C 1.47196 * 109.47133 * 184.99579 * 25 24 14 27 27 N 6.33077 * 79.85158 * 331.93761 * 2 1 3 28 28 H 1.08990 * 109.47467 * 64.86435 * 1 2 3 29 29 H 1.09006 * 109.46238 * 184.86498 * 1 2 3 30 30 H 1.08995 * 109.46530 * 304.86142 * 1 2 3 31 31 H 1.09001 * 109.47085 * 240.00827 * 2 1 3 32 32 H 1.08999 * 109.47481 * 120.00532 * 2 1 3 33 33 H 1.08998 * 109.47616 * 305.00033 * 5 3 2 34 34 H 1.09003 * 109.47461 * 184.99854 * 5 3 2 35 35 H 1.08001 * 119.99712 * 0.02562 * 7 6 5 36 36 H 1.07999 * 120.00489 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.99990 * 179.97438 * 9 8 7 38 38 H 1.08002 * 120.00299 * 179.72112 * 10 9 8 39 39 H 1.08005 * 120.00097 * 0.02562 * 11 6 5 40 40 H 1.09003 * 109.46840 * 209.99524 * 15 14 12 41 41 H 1.08998 * 109.47235 * 329.99665 * 15 14 12 42 42 H 0.97002 * 119.99950 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47142 * 214.77324 * 24 14 12 44 44 H 1.08992 * 109.47508 * 334.77848 * 24 14 12 45 45 H 1.09005 * 109.46629 * 304.99382 * 25 24 14 46 46 H 1.09000 * 109.47494 * 64.99423 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6002 1.9834 -0.8379 5 6 3.5640 1.4447 -0.1351 6 6 3.9499 0.8855 -1.4803 7 6 4.0836 1.7293 -2.5670 8 6 4.4370 1.2163 -3.8010 9 6 4.6562 -0.1406 -3.9484 10 6 4.5169 -0.9852 -2.8630 11 6 4.1696 -0.4713 -1.6275 12 6 1.6493 2.1134 1.2917 13 8 1.6247 1.4757 2.3230 14 7 1.3270 3.4220 1.3007 15 6 0.8400 4.0480 2.5325 16 6 2.0078 4.5888 3.3167 17 1 3.0121 4.4777 2.9355 18 6 1.7938 5.2263 4.5204 19 7 2.8128 5.6986 5.2045 20 14 0.0565 5.4203 5.1787 21 1 -0.2870 4.2474 6.0223 22 1 -0.0285 6.6584 5.9942 23 1 -0.8961 5.5092 4.0430 24 6 1.4638 4.2185 0.0787 25 6 0.1214 4.2628 -0.6541 26 6 0.2869 4.9606 -1.9395 27 7 0.4146 5.4991 -2.9316 28 1 -0.3634 0.4365 -0.9302 29 1 -0.3632 -1.0241 0.0872 30 1 -0.3632 0.5874 0.8432 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9995 0.8298 0.6525 34 1 3.9352 2.4657 -0.0461 35 1 3.9119 2.7893 -2.4519 36 1 4.5411 1.8755 -4.6502 37 1 4.9319 -0.5414 -4.9126 38 1 4.6837 -2.0459 -2.9791 39 1 4.0643 -1.1307 -0.7787 40 1 0.1617 4.8636 2.2819 41 1 0.3115 3.3070 3.1322 42 1 2.6624 6.1468 6.0515 43 1 1.7697 5.2321 0.3381 44 1 2.2158 3.7662 -0.5676 45 1 -0.2275 3.2460 -0.8348 46 1 -0.6086 4.7942 -0.0435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000522124087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:35 Heat of formation + Delta-G solvation = 1.060955 kcal Electronic energy + Delta-G solvation = -26426.484668 eV Core-core repulsion = 22894.641095 eV Total energy + Delta-G solvation = -3531.843573 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.14950 -39.04993 -36.96231 -35.58040 -35.09319 -32.75240 -32.07960 -31.01956 -30.96034 -29.22524 -27.73230 -24.71477 -24.00454 -23.23610 -22.53012 -21.48642 -20.58763 -18.37495 -17.66911 -17.17401 -16.80610 -16.59027 -15.76018 -15.28051 -15.20047 -14.85560 -14.59382 -14.14558 -14.00246 -13.78976 -13.56160 -13.49847 -13.22495 -12.90364 -12.70845 -12.60490 -12.52258 -12.49274 -12.22961 -11.83986 -11.81910 -11.61004 -11.18109 -11.12546 -11.09564 -10.96720 -10.90745 -10.74985 -10.62006 -10.52107 -10.22075 -9.59157 -9.07853 -8.96935 -8.71408 -8.62567 -7.90234 -6.11906 -4.11157 1.25768 1.30856 2.67438 2.76101 3.20601 3.25567 3.30826 3.33557 3.55105 3.72253 4.11147 4.35675 4.62834 4.72565 4.88283 4.89615 4.91616 5.02014 5.03807 5.11446 5.16709 5.21157 5.31623 5.36929 5.41158 5.44869 5.50709 5.67806 5.69789 5.73622 5.84168 5.91116 6.00268 6.01710 6.06950 6.16600 6.32115 6.37137 6.39725 6.41660 6.57681 6.61115 6.85450 6.92025 7.20505 7.51957 7.55909 8.09690 8.41996 8.85575 8.93059 9.47790 11.01426 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.004051 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.893443 B = 6910.400675 C = 7601.437625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.111 4.111 3 C -0.104 4.104 4 H 0.087 0.913 5 C -0.074 4.074 6 C -0.070 4.070 7 C -0.116 4.116 8 C -0.119 4.119 9 C -0.128 4.128 10 C -0.121 4.121 11 C -0.114 4.114 12 C 0.516 3.484 13 O -0.526 6.526 14 N -0.593 5.593 15 C 0.215 3.785 16 C -0.529 4.529 17 H 0.075 0.925 18 C 0.073 3.927 19 N -0.896 5.896 20 Si 0.874 3.126 21 H -0.274 1.274 22 H -0.286 1.286 23 H -0.265 1.265 24 C 0.116 3.884 25 C -0.053 4.053 26 C 0.215 3.785 27 N -0.442 5.442 28 H 0.049 0.951 29 H 0.053 0.947 30 H 0.059 0.941 31 H 0.070 0.930 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.080 0.920 35 H 0.121 0.879 36 H 0.119 0.881 37 H 0.117 0.883 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.031 0.969 41 H 0.037 0.963 42 H 0.265 0.735 43 H 0.096 0.904 44 H 0.079 0.921 45 H 0.108 0.892 46 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.624 -10.652 -16.478 19.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.149 4.149 3 C -0.125 4.125 4 H 0.105 0.895 5 C -0.112 4.112 6 C -0.071 4.071 7 C -0.135 4.135 8 C -0.137 4.137 9 C -0.146 4.146 10 C -0.139 4.139 11 C -0.132 4.132 12 C 0.303 3.697 13 O -0.402 6.402 14 N -0.324 5.324 15 C 0.095 3.905 16 C -0.567 4.567 17 H 0.093 0.907 18 C -0.130 4.130 19 N -0.534 5.534 20 Si 0.701 3.299 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.190 1.190 24 C -0.010 4.010 25 C -0.094 4.094 26 C -0.103 4.103 27 N -0.119 5.119 28 H 0.068 0.932 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.088 0.912 32 H 0.094 0.906 33 H 0.102 0.898 34 H 0.098 0.902 35 H 0.139 0.861 36 H 0.137 0.863 37 H 0.135 0.865 38 H 0.137 0.863 39 H 0.141 0.859 40 H 0.049 0.951 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.114 0.886 44 H 0.098 0.902 45 H 0.126 0.874 46 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -1.410 -10.077 -17.195 19.980 hybrid contribution -0.851 0.128 0.805 1.179 sum -2.261 -9.949 -16.389 19.306 Atomic orbital electron populations 1.21790 0.95844 1.01810 1.01591 1.21511 0.96029 0.94489 1.02847 1.21439 0.96243 0.98055 0.96794 0.89529 1.20556 0.93966 1.02509 0.94145 1.19864 0.98326 0.93652 0.95213 1.21095 1.00050 0.99756 0.92551 1.21129 0.99764 0.95439 0.97363 1.21113 1.01045 0.93790 0.98700 1.21134 1.00067 0.99622 0.93041 1.21123 0.99617 0.94846 0.97594 1.20302 0.77434 0.81880 0.90081 1.90684 1.51617 1.63808 1.34072 1.47906 1.65154 1.08414 1.10917 1.19706 0.95804 0.93078 0.81959 1.21297 0.94104 1.36483 1.04851 0.90653 1.24857 0.96807 0.94963 0.96325 1.69892 1.30338 1.38447 1.14755 0.86889 0.85280 0.78002 0.79715 1.19944 1.21141 1.18997 1.21360 0.93896 0.99120 0.86636 1.19927 1.02227 1.00632 0.86638 1.29066 0.93263 0.93446 0.94496 1.81214 1.08560 1.09860 1.12272 0.93182 0.92743 0.92217 0.91174 0.90585 0.89783 0.90166 0.86103 0.86299 0.86461 0.86275 0.85853 0.95076 0.94468 0.92545 0.88585 0.90234 0.87404 0.86636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 9.81 37.16 0.36 -1.37 16 2 C -0.11 -1.33 4.90 -26.73 -0.13 -1.46 16 3 C -0.10 -1.33 1.35 -91.77 -0.12 -1.45 16 4 H 0.09 0.94 5.83 -51.93 -0.30 0.64 16 5 C -0.07 -0.92 4.64 -27.89 -0.13 -1.05 16 6 C -0.07 -0.78 4.72 -104.62 -0.49 -1.27 16 7 C -0.12 -1.24 9.70 -39.59 -0.38 -1.62 16 8 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 9 C -0.13 -1.18 10.05 -39.58 -0.40 -1.58 16 10 C -0.12 -1.12 10.05 -39.58 -0.40 -1.52 16 11 C -0.11 -1.17 7.87 -39.58 -0.31 -1.48 16 12 C 0.52 9.02 5.63 -10.98 -0.06 8.96 16 13 O -0.53 -11.61 15.65 5.56 0.09 -11.53 16 14 N -0.59 -10.29 2.46 -175.06 -0.43 -10.72 16 15 C 0.21 4.66 4.21 -5.19 -0.02 4.64 16 16 C -0.53 -14.17 9.94 -34.44 -0.34 -14.51 16 17 H 0.08 2.23 8.06 -52.49 -0.42 1.81 16 18 C 0.07 2.03 5.47 -17.82 -0.10 1.93 16 19 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 20 Si 0.87 20.48 27.47 -169.99 -4.67 15.81 16 21 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.27 -5.70 6.54 56.52 0.37 -5.33 16 24 C 0.12 1.50 4.94 -4.04 -0.02 1.48 16 25 C -0.05 -0.53 5.83 -29.52 -0.17 -0.70 16 26 C 0.22 2.49 15.43 -20.76 -0.32 2.17 16 27 N -0.44 -6.25 18.54 42.15 0.78 -5.46 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.06 0.80 7.14 -51.93 -0.37 0.43 16 31 H 0.07 0.74 5.89 -51.93 -0.31 0.43 16 32 H 0.08 1.03 7.67 -51.93 -0.40 0.63 16 33 H 0.08 1.13 8.09 -51.93 -0.42 0.71 16 34 H 0.08 1.03 7.56 -51.93 -0.39 0.64 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 37 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.44 16 39 H 0.12 1.16 7.98 -52.48 -0.42 0.74 16 40 H 0.03 0.63 7.13 -51.93 -0.37 0.26 16 41 H 0.04 0.87 6.93 -51.93 -0.36 0.51 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 43 H 0.10 1.32 8.11 -51.93 -0.42 0.90 16 44 H 0.08 0.89 5.74 -51.93 -0.30 0.59 16 45 H 0.11 0.90 7.63 -51.93 -0.40 0.51 16 46 H 0.12 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 382.09 15.07 5.76 5.76 Total: -1.00 -33.18 382.09 -8.14 -41.32 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.00 Total: 1.19 kcal Atomic # 6 Polarization: -6.96 SS G_CDS: -3.44 Total: -10.40 kcal Atomic # 7 Polarization: -43.28 SS G_CDS: 1.13 Total: -42.15 kcal Atomic # 8 Polarization: -11.61 SS G_CDS: 0.09 Total: -11.53 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -4.67 Total: 15.81 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -33.18 -8.14 -41.32 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522124087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.385 kcal (2) G-P(sol) polarization free energy of solvation -33.184 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds