Wall clock time and date at job start Tue Mar 31 2020 12:03:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.47128 * 2 1 4 4 H 1.09003 * 109.47191 * 305.38040 * 3 2 1 5 5 C 1.52990 * 109.47330 * 185.37347 * 3 2 1 6 6 C 1.50704 * 109.47142 * 65.00410 * 5 3 2 7 7 C 1.38232 * 120.00192 * 89.99731 * 6 5 3 8 8 C 1.38234 * 120.00373 * 180.02562 * 7 6 5 9 9 C 1.38234 * 119.99691 * 0.02562 * 8 7 6 10 10 C 1.38240 * 120.00232 * 0.25198 * 9 8 7 11 11 C 1.38234 * 119.99871 * 270.02204 * 6 5 3 12 12 C 1.50707 * 109.46775 * 65.37505 * 3 2 1 13 13 O 1.21279 * 119.99859 * 34.96499 * 12 3 2 14 14 N 1.34772 * 119.99702 * 214.97074 * 12 3 2 15 15 C 1.46507 * 119.99726 * 174.90394 * 14 12 3 16 16 C 1.50699 * 109.46768 * 89.99812 * 15 14 12 17 17 H 1.07996 * 120.00633 * 0.02562 * 16 15 14 18 18 C 1.37878 * 119.99740 * 179.97438 * 16 15 14 19 19 N 1.31513 * 119.99940 * 180.02562 * 18 16 15 20 20 Si 1.86801 * 119.99970 * 359.97438 * 18 16 15 21 21 H 1.48506 * 109.46792 * 90.00131 * 20 18 16 22 22 H 1.48501 * 109.47041 * 209.99645 * 20 18 16 23 23 H 1.48493 * 109.47051 * 329.99966 * 20 18 16 24 24 C 1.46499 * 120.00267 * 354.89926 * 14 12 3 25 25 C 1.53002 * 109.47027 * 94.77788 * 24 14 12 26 26 C 1.47196 * 109.47133 * 184.99579 * 25 24 14 27 27 N 6.33077 * 79.85158 * 331.93761 * 2 1 3 28 28 H 1.08990 * 109.47467 * 64.86435 * 1 2 3 29 29 H 1.09006 * 109.46238 * 184.86498 * 1 2 3 30 30 H 1.08995 * 109.46530 * 304.86142 * 1 2 3 31 31 H 1.09001 * 109.47085 * 240.00827 * 2 1 3 32 32 H 1.08999 * 109.47481 * 120.00532 * 2 1 3 33 33 H 1.08998 * 109.47616 * 305.00033 * 5 3 2 34 34 H 1.09003 * 109.47461 * 184.99854 * 5 3 2 35 35 H 1.08001 * 119.99712 * 0.02562 * 7 6 5 36 36 H 1.07999 * 120.00489 * 179.97438 * 8 7 6 37 37 H 1.08002 * 119.99990 * 179.97438 * 9 8 7 38 38 H 1.08002 * 120.00299 * 179.72112 * 10 9 8 39 39 H 1.08005 * 120.00097 * 0.02562 * 11 6 5 40 40 H 1.09003 * 109.46840 * 209.99524 * 15 14 12 41 41 H 1.08998 * 109.47235 * 329.99665 * 15 14 12 42 42 H 0.97002 * 119.99950 * 180.02562 * 19 18 16 43 43 H 1.08999 * 109.47142 * 214.77324 * 24 14 12 44 44 H 1.08992 * 109.47508 * 334.77848 * 24 14 12 45 45 H 1.09005 * 109.46629 * 304.99382 * 25 24 14 46 46 H 1.09000 * 109.47494 * 64.99423 * 25 24 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6002 1.9834 -0.8379 5 6 3.5640 1.4447 -0.1351 6 6 3.9499 0.8855 -1.4803 7 6 4.0836 1.7293 -2.5670 8 6 4.4370 1.2163 -3.8010 9 6 4.6562 -0.1406 -3.9484 10 6 4.5169 -0.9852 -2.8630 11 6 4.1696 -0.4713 -1.6275 12 6 1.6493 2.1134 1.2917 13 8 1.6247 1.4757 2.3230 14 7 1.3270 3.4220 1.3007 15 6 0.8400 4.0480 2.5325 16 6 2.0078 4.5888 3.3167 17 1 3.0121 4.4777 2.9355 18 6 1.7938 5.2263 4.5204 19 7 2.8128 5.6986 5.2045 20 14 0.0565 5.4203 5.1787 21 1 -0.2870 4.2474 6.0223 22 1 -0.0285 6.6584 5.9942 23 1 -0.8961 5.5092 4.0430 24 6 1.4638 4.2185 0.0787 25 6 0.1214 4.2628 -0.6541 26 6 0.2869 4.9606 -1.9395 27 7 0.4146 5.4991 -2.9316 28 1 -0.3634 0.4365 -0.9302 29 1 -0.3632 -1.0241 0.0872 30 1 -0.3632 0.5874 0.8432 31 1 1.8934 -0.5137 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.9995 0.8298 0.6525 34 1 3.9352 2.4657 -0.0461 35 1 3.9119 2.7893 -2.4519 36 1 4.5411 1.8755 -4.6502 37 1 4.9319 -0.5414 -4.9126 38 1 4.6837 -2.0459 -2.9791 39 1 4.0643 -1.1307 -0.7787 40 1 0.1617 4.8636 2.2819 41 1 0.3115 3.3070 3.1322 42 1 2.6624 6.1468 6.0515 43 1 1.7697 5.2321 0.3381 44 1 2.2158 3.7662 -0.5676 45 1 -0.2275 3.2460 -0.8348 46 1 -0.6086 4.7942 -0.0435 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000522124087.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:34 Heat of formation + Delta-G solvation = -17.087603 kcal Electronic energy + Delta-G solvation = -26427.271648 eV Core-core repulsion = 22894.641095 eV Total energy + Delta-G solvation = -3532.630554 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -41.35113 -39.98700 -38.03308 -36.83150 -36.28982 -34.71788 -32.95210 -32.30939 -31.71252 -30.45332 -29.16711 -25.81590 -25.22106 -24.54275 -23.45921 -22.50425 -21.65571 -19.66667 -19.09975 -18.53678 -18.17242 -17.46489 -17.12417 -16.33004 -16.14669 -16.01884 -15.71871 -15.56383 -15.15162 -14.89192 -14.66919 -14.50324 -14.29591 -14.12943 -13.86199 -13.76738 -13.62420 -13.54836 -13.40363 -13.27793 -12.97827 -12.75365 -12.66526 -12.39757 -12.08657 -12.01628 -11.91487 -11.87618 -11.83960 -11.70995 -11.66904 -11.54949 -10.75659 -10.46641 -9.73827 -9.54790 -9.43003 -8.26213 -6.30518 0.48584 0.56378 1.39104 1.43299 1.50590 1.68701 1.85162 1.86328 2.29349 2.37700 2.94061 3.07462 3.13676 3.58837 3.77670 3.96992 4.03419 4.09201 4.12271 4.16258 4.23465 4.34648 4.36811 4.48890 4.51998 4.59991 4.70457 4.71395 4.80590 4.83945 4.88557 4.96450 5.01197 5.04213 5.11005 5.19093 5.23037 5.24071 5.38516 5.44558 5.54569 5.64472 5.66728 5.69495 5.78597 6.18307 6.31229 6.60990 6.70398 6.73221 7.29693 7.48498 8.90840 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013388 B = 0.004051 C = 0.003683 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2090.893443 B = 6910.400675 C = 7601.437625 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.107 4.107 3 C -0.090 4.090 4 H 0.114 0.886 5 C -0.070 4.070 6 C -0.080 4.080 7 C -0.127 4.127 8 C -0.125 4.125 9 C -0.129 4.129 10 C -0.123 4.123 11 C -0.124 4.124 12 C 0.513 3.487 13 O -0.580 6.580 14 N -0.595 5.595 15 C 0.222 3.778 16 C -0.530 4.530 17 H 0.028 0.972 18 C 0.008 3.992 19 N -0.950 5.950 20 Si 0.943 3.057 21 H -0.279 1.279 22 H -0.284 1.284 23 H -0.225 1.225 24 C 0.110 3.890 25 C -0.041 4.041 26 C 0.243 3.757 27 N -0.484 5.484 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.035 0.965 31 H 0.090 0.910 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.125 0.875 36 H 0.135 0.865 37 H 0.141 0.859 38 H 0.140 0.860 39 H 0.126 0.874 40 H 0.062 0.938 41 H 0.024 0.976 42 H 0.265 0.735 43 H 0.086 0.914 44 H 0.097 0.903 45 H 0.134 0.866 46 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.682 -11.422 -19.243 22.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.145 4.145 3 C -0.111 4.111 4 H 0.132 0.868 5 C -0.107 4.107 6 C -0.080 4.080 7 C -0.145 4.145 8 C -0.143 4.143 9 C -0.147 4.147 10 C -0.141 4.141 11 C -0.142 4.142 12 C 0.302 3.698 13 O -0.460 6.460 14 N -0.325 5.325 15 C 0.100 3.900 16 C -0.569 4.569 17 H 0.046 0.954 18 C -0.189 4.189 19 N -0.591 5.591 20 Si 0.766 3.234 21 H -0.205 1.205 22 H -0.210 1.210 23 H -0.148 1.148 24 C -0.014 4.014 25 C -0.081 4.081 26 C -0.075 4.075 27 N -0.162 5.162 28 H 0.093 0.907 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.109 0.891 32 H 0.071 0.929 33 H 0.083 0.917 34 H 0.089 0.911 35 H 0.143 0.857 36 H 0.153 0.847 37 H 0.158 0.842 38 H 0.158 0.842 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.042 0.958 42 H 0.074 0.926 43 H 0.104 0.896 44 H 0.115 0.885 45 H 0.152 0.848 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -3.474 -10.836 -20.029 23.036 hybrid contribution -0.042 0.317 1.637 1.668 sum -3.515 -10.519 -18.392 21.477 Atomic orbital electron populations 1.21785 0.94972 1.02321 1.01767 1.21493 0.96760 0.93578 1.02645 1.21415 0.96533 0.98509 0.94671 0.86773 1.20447 0.93655 1.01700 0.94942 1.19691 0.99837 0.94200 0.94265 1.21214 1.00454 0.99978 0.92850 1.21387 0.99332 0.96166 0.97449 1.21451 0.99956 0.93580 0.99683 1.21414 0.99252 1.00880 0.92510 1.21250 0.99917 0.94591 0.98401 1.21137 0.75978 0.81649 0.91057 1.90655 1.53817 1.65068 1.36429 1.47886 1.64749 1.08803 1.11035 1.19415 0.93999 0.93394 0.83201 1.21610 0.93905 1.35947 1.05448 0.95396 1.25859 1.01651 0.94716 0.96702 1.70068 1.33267 1.40251 1.15513 0.85786 0.80144 0.77460 0.80002 1.20514 1.20986 1.14758 1.21544 0.96455 0.98069 0.85371 1.19878 1.00442 1.02271 0.85557 1.29119 0.91964 0.92305 0.94075 1.81259 1.09812 1.11365 1.13782 0.90746 0.91766 0.94572 0.89147 0.92938 0.91689 0.91147 0.85738 0.84710 0.84162 0.84174 0.85610 0.92064 0.95842 0.92594 0.89602 0.88485 0.84779 0.85037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.11 9.81 71.98 0.71 -2.41 16 2 C -0.11 -2.44 4.90 30.60 0.15 -2.29 16 3 C -0.09 -2.22 1.35 -11.54 -0.02 -2.23 16 4 H 0.11 2.16 5.83 -2.39 -0.01 2.14 16 5 C -0.07 -1.75 4.64 29.85 0.14 -1.61 16 6 C -0.08 -1.68 4.72 -19.87 -0.09 -1.77 16 7 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 8 C -0.13 -2.12 10.05 22.27 0.22 -1.89 16 9 C -0.13 -1.97 10.05 22.27 0.22 -1.75 16 10 C -0.12 -1.96 10.05 22.27 0.22 -1.74 16 11 C -0.12 -2.36 7.87 22.27 0.18 -2.18 16 12 C 0.51 18.01 5.63 87.66 0.49 18.50 16 13 O -0.58 -26.56 15.65 -3.03 -0.05 -26.61 16 14 N -0.59 -20.28 2.46 -826.15 -2.03 -22.31 16 15 C 0.22 9.49 4.21 85.63 0.36 9.85 16 16 C -0.53 -29.30 9.94 25.60 0.25 -29.04 16 17 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 18 C 0.01 0.46 5.47 84.66 0.46 0.92 16 19 N -0.95 -59.00 13.96 21.45 0.30 -58.71 16 20 Si 0.94 42.08 27.47 68.60 1.88 43.97 16 21 H -0.28 -12.66 7.11 99.48 0.71 -11.95 16 22 H -0.28 -12.52 7.11 99.48 0.71 -11.82 16 23 H -0.23 -8.51 6.54 99.48 0.65 -7.86 16 24 C 0.11 2.64 4.94 86.38 0.43 3.07 16 25 C -0.04 -0.66 5.83 28.79 0.17 -0.50 16 26 C 0.24 4.91 15.43 89.44 1.38 6.29 16 27 N -0.48 -12.66 18.54 20.01 0.37 -12.29 16 28 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 29 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.04 0.92 7.14 -2.39 -0.02 0.90 16 31 H 0.09 1.70 5.89 -2.39 -0.01 1.69 16 32 H 0.05 1.45 7.67 -2.39 -0.02 1.43 16 33 H 0.06 1.85 8.09 -2.39 -0.02 1.83 16 34 H 0.07 1.86 7.56 -2.39 -0.02 1.85 16 35 H 0.12 2.24 8.06 -2.91 -0.02 2.21 16 36 H 0.14 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.14 1.47 8.06 -2.91 -0.02 1.44 16 38 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 39 H 0.13 2.26 7.98 -2.91 -0.02 2.24 16 40 H 0.06 2.28 7.13 -2.39 -0.02 2.26 16 41 H 0.02 1.09 6.93 -2.39 -0.02 1.07 16 42 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 43 H 0.09 2.27 8.11 -2.39 -0.02 2.25 16 44 H 0.10 1.99 5.74 -2.39 -0.01 1.97 16 45 H 0.13 1.61 7.63 -2.38 -0.02 1.60 16 46 H 0.13 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -76.70 382.09 6.88 -69.82 By element: Atomic # 1 Polarization: 16.23 SS G_CDS: 0.91 Total: 17.14 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: 5.49 Total: -11.02 kcal Atomic # 7 Polarization: -91.94 SS G_CDS: -1.36 Total: -93.30 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.05 Total: -26.61 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 1.88 Total: 43.97 kcal Total: -76.70 6.88 -69.82 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000522124087.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.729 kcal (2) G-P(sol) polarization free energy of solvation -76.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.969 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.881 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds