Wall clock time and date at job start Tue Mar 31 2020 12:05:29
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53001 * 1
3 3 C 1.53003 * 109.46677 * 2 1
4 4 H 1.09005 * 109.46803 * 304.99933 * 3 2 1
5 5 C 1.52999 * 109.47165 * 64.99730 * 3 2 1
6 6 C 1.53002 * 109.46994 * 185.00052 * 3 2 1
7 7 C 1.52994 * 109.46946 * 174.99930 * 6 3 2
8 8 N 1.46506 * 109.47224 * 179.97438 * 7 6 3
9 9 C 1.34777 * 120.00118 * 177.21967 * 8 7 6
10 10 O 1.21666 * 120.00141 * 5.31854 * 9 8 7
11 11 C 1.46882 * 119.99846 * 185.32037 * 9 8 7
12 12 C 1.36122 * 125.43840 * 186.42489 * 11 9 8
13 13 C 1.41700 * 107.75458 * 180.02562 * 12 11 9
14 14 C 1.40015 * 133.35356 * 180.02562 * 13 12 11
15 15 C 1.36578 * 119.83319 * 179.97438 * 14 13 12
16 16 C 1.38855 * 120.59907 * 359.97397 * 15 14 13
17 17 C 1.37851 * 120.63407 * 0.29469 * 16 15 14
18 18 C 1.39090 * 119.80770 * 359.46227 * 17 16 15
19 19 N 1.37841 * 133.16016 * 180.19284 * 18 17 16
20 20 C 1.36889 * 125.61926 * 0.26426 * 19 18 17
21 21 H 1.08001 * 120.00266 * 222.03219 * 20 19 18
22 22 C 1.39012 * 120.00021 * 42.04307 * 20 19 18
23 23 N 1.31351 * 120.00305 * 11.29760 * 22 20 19
24 24 Si 1.86804 * 120.00097 * 191.30571 * 22 20 19
25 25 H 1.48503 * 109.46879 * 359.97438 * 24 22 20
26 26 H 1.48499 * 109.47125 * 119.99269 * 24 22 20
27 27 H 1.48496 * 109.47047 * 239.99742 * 24 22 20
28 28 H 1.08995 * 109.47481 * 60.00562 * 1 2 3
29 29 H 1.09007 * 109.46956 * 179.97438 * 1 2 3
30 30 H 1.08993 * 109.47413 * 299.99671 * 1 2 3
31 31 H 1.08993 * 109.47413 * 240.00329 * 2 1 3
32 32 H 1.08996 * 109.46979 * 119.99589 * 2 1 3
33 33 H 1.09000 * 109.47004 * 179.97438 * 5 3 2
34 34 H 1.09000 * 109.47394 * 300.00182 * 5 3 2
35 35 H 1.09005 * 109.47094 * 60.00381 * 5 3 2
36 36 H 1.08997 * 109.47142 * 54.99689 * 6 3 2
37 37 H 1.08997 * 109.46740 * 295.00186 * 6 3 2
38 38 H 1.08997 * 109.47397 * 59.99915 * 7 6 3
39 39 H 1.08997 * 109.47610 * 299.99723 * 7 6 3
40 40 H 0.96996 * 119.99714 * 357.22196 * 8 7 6
41 41 H 1.08004 * 126.12191 * 0.06439 * 12 11 9
42 42 H 1.08002 * 120.08602 * 359.97438 * 14 13 12
43 43 H 1.08002 * 119.70446 * 180.02562 * 15 14 13
44 44 H 1.08000 * 119.68174 * 180.02562 * 16 15 14
45 45 H 1.07992 * 120.09520 * 179.69295 * 17 16 15
46 46 H 0.96991 * 120.00357 * 183.49943 * 23 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0399 1.4426 0.0000
4 1 1.6052 1.9815 -0.8419
5 6 1.6350 2.1266 1.3073
6 6 3.5648 1.4445 -0.1257
7 6 4.0643 2.8851 -0.2512
8 7 5.5244 2.8871 -0.3709
9 6 6.1844 4.0485 -0.5500
10 8 5.5794 5.1035 -0.5155
11 6 7.6339 4.0405 -0.7869
12 6 8.4281 5.1437 -0.8584
13 6 9.7544 4.7066 -1.0984
14 6 10.9727 5.3770 -1.2617
15 6 12.1159 4.6640 -1.4859
16 6 12.0824 3.2775 -1.5532
17 6 10.8942 2.5954 -1.4011
18 6 9.7178 3.2995 -1.1667
19 7 8.4092 2.9116 -0.9737
20 6 7.9528 1.6211 -0.9679
21 1 7.0266 1.3736 -1.4652
22 6 8.6813 0.6291 -0.3216
23 7 9.6805 0.9556 0.4660
24 14 8.2395 -1.1684 -0.5735
25 1 7.0836 -1.2688 -1.5003
26 1 9.4026 -1.8876 -1.1525
27 1 7.8807 -1.7776 0.7324
28 1 -0.3634 0.5137 -0.8900
29 1 -0.3633 -1.0277 -0.0005
30 1 -0.3634 0.5137 0.8899
31 1 1.8934 -0.5137 -0.8899
32 1 1.8933 -0.5138 0.8900
33 1 1.9987 3.1542 1.3075
34 1 0.5487 2.1252 1.3969
35 1 2.0697 1.5876 2.1492
36 1 3.8570 0.8802 -1.0113
37 1 4.0028 0.9837 0.7596
38 1 3.7720 3.4494 0.6344
39 1 3.6262 3.3459 -1.1365
40 1 6.0162 2.0525 -0.3214
41 1 8.1051 6.1687 -0.7509
42 1 11.0085 6.4552 -1.2105
43 1 13.0546 5.1832 -1.6111
44 1 12.9953 2.7285 -1.7307
45 1 10.8773 1.5172 -1.4599
46 1 10.2208 0.2626 0.8767
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000597977009.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 12:05:29
Heat of formation + Delta-G solvation = -5.009148 kcal
Electronic energy + Delta-G solvation = -26098.252259 eV
Core-core repulsion = 22566.145467 eV
Total energy + Delta-G solvation = -3532.106792 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 0.98 seconds
Orbital eigenvalues (eV)
-40.47878 -38.64391 -37.29517 -35.91345 -34.33377 -33.56307 -31.08560 -30.67552
-29.08093 -28.38007 -27.53105 -25.30770 -25.00729 -23.01570 -21.53738 -21.01738
-20.23164 -19.86689 -19.11125 -18.14049 -16.45512 -15.69547 -15.64745 -15.50497
-14.87329 -14.85828 -14.60602 -14.24475 -13.96769 -13.68826 -13.38854 -13.08435
-13.03601 -12.95094 -12.54659 -12.48927 -12.07686 -11.94774 -11.80511 -11.77355
-11.65361 -11.43199 -11.20944 -11.06932 -10.79278 -10.72477 -10.65564 -10.58304
-10.49353 -10.24992 -9.80398 -9.36551 -9.27728 -8.66791 -8.44442 -7.24381
-6.87621 -6.57710 -4.70963 1.84375 2.73113 2.90191 2.91996 2.95463
3.15845 3.65423 3.83717 4.24532 4.52360 4.62362 4.72043 4.78551
4.86254 5.07277 5.16848 5.27062 5.40043 5.47385 5.52964 5.64089
5.71222 5.76365 5.83837 5.86756 5.94003 5.95676 5.96794 6.03397
6.09339 6.14165 6.21393 6.37941 6.39304 6.43479 6.56546 6.69052
6.80506 6.91231 7.06566 7.10616 7.12370 7.45187 7.57130 7.63438
7.91499 7.94216 8.25079 8.28488 8.67169 8.98873 9.24823 10.08631
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.015024 B = 0.004019 C = 0.003258
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1863.275506 B = 6964.461503 C = 8591.782280
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.153 4.153
2 C -0.121 4.121
3 C -0.087 4.087
4 H 0.072 0.928
5 C -0.153 4.153
6 C -0.129 4.129
7 C 0.119 3.881
8 N -0.731 5.731
9 C 0.595 3.405
10 O -0.560 6.560
11 C -0.019 4.019
12 C -0.165 4.165
13 C -0.134 4.134
14 C -0.085 4.085
15 C -0.161 4.161
16 C -0.146 4.146
17 C -0.056 4.056
18 C 0.105 3.895
19 N -0.260 5.260
20 C -0.375 4.375
21 H 0.109 0.891
22 C 0.058 3.942
23 N -0.814 5.814
24 Si 0.923 3.077
25 H -0.260 1.260
26 H -0.270 1.270
27 H -0.272 1.272
28 H 0.053 0.947
29 H 0.050 0.950
30 H 0.056 0.944
31 H 0.062 0.938
32 H 0.062 0.938
33 H 0.059 0.941
34 H 0.055 0.945
35 H 0.054 0.946
36 H 0.069 0.931
37 H 0.070 0.930
38 H 0.063 0.937
39 H 0.061 0.939
40 H 0.416 0.584
41 H 0.132 0.868
42 H 0.104 0.896
43 H 0.103 0.897
44 H 0.105 0.895
45 H 0.113 0.887
46 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -8.557 -3.819 -0.538 9.386
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.210 4.210
2 C -0.158 4.158
3 C -0.106 4.106
4 H 0.090 0.910
5 C -0.210 4.210
6 C -0.167 4.167
7 C -0.005 4.005
8 N -0.390 5.390
9 C 0.385 3.615
10 O -0.439 6.439
11 C -0.134 4.134
12 C -0.193 4.193
13 C -0.138 4.138
14 C -0.104 4.104
15 C -0.180 4.180
16 C -0.167 4.167
17 C -0.076 4.076
18 C -0.010 4.010
19 N 0.076 4.924
20 C -0.502 4.502
21 H 0.126 0.874
22 C -0.156 4.156
23 N -0.442 5.442
24 Si 0.746 3.254
25 H -0.184 1.184
26 H -0.195 1.195
27 H -0.197 1.197
28 H 0.072 0.928
29 H 0.070 0.930
30 H 0.075 0.925
31 H 0.081 0.919
32 H 0.081 0.919
33 H 0.078 0.922
34 H 0.074 0.926
35 H 0.073 0.927
36 H 0.088 0.912
37 H 0.089 0.911
38 H 0.081 0.919
39 H 0.079 0.921
40 H 0.261 0.739
41 H 0.150 0.850
42 H 0.123 0.877
43 H 0.121 0.879
44 H 0.123 0.877
45 H 0.131 0.869
46 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -9.068 -3.569 -0.311 9.750
hybrid contribution 0.236 -1.353 0.126 1.379
sum -8.832 -4.922 -0.185 10.113
Atomic orbital electron populations
1.21819 0.96030 1.01325 1.01858 1.21581 0.95725 0.96370 1.02140
1.21083 0.94634 0.96215 0.98710 0.90961 1.21965 1.01022 1.00956
0.97050 1.21866 0.95422 0.96479 1.02965 1.21308 0.81134 0.96505
1.01601 1.46675 1.07080 1.11255 1.74025 1.17264 0.85348 0.83419
0.75503 1.90708 1.68548 1.31349 1.53334 1.20109 0.91079 0.88035
1.14197 1.20384 0.91068 0.96787 1.11042 1.18029 0.93469 0.92887
1.09448 1.20060 0.91282 0.98006 1.01065 1.20267 0.97045 0.94119
1.06595 1.20577 0.96439 0.94071 1.05591 1.20071 0.89805 0.98874
0.98808 1.18205 0.86376 0.92095 1.04359 1.39945 1.04094 1.03870
1.44445 1.19617 1.11390 0.82048 1.37184 0.87373 1.25666 0.95740
1.01375 0.92850 1.69969 1.16112 1.35626 1.22465 0.85927 0.79753
0.80660 0.79054 1.18367 1.19452 1.19712 0.92834 0.93046 0.92512
0.91948 0.91940 0.92165 0.92640 0.92661 0.91192 0.91138 0.91880
0.92069 0.73924 0.85022 0.87748 0.87921 0.87711 0.86868 0.90611
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16
2 C -0.12 -1.13 5.40 -26.73 -0.14 -1.27 16
3 C -0.09 -0.91 2.39 -90.62 -0.22 -1.13 16
4 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16
5 C -0.15 -1.54 8.70 37.16 0.32 -1.21 16
6 C -0.13 -1.63 4.80 -26.73 -0.13 -1.76 16
7 C 0.12 1.86 5.44 -4.04 -0.02 1.84 16
8 N -0.73 -14.29 5.32 -61.56 -0.33 -14.62 16
9 C 0.60 13.66 7.76 -12.76 -0.10 13.56 16
10 O -0.56 -13.61 16.86 5.22 0.09 -13.53 16
11 C -0.02 -0.47 6.77 -82.25 -0.56 -1.03 16
12 C -0.16 -3.92 10.55 -39.02 -0.41 -4.33 16
13 C -0.13 -3.17 6.16 -106.89 -0.66 -3.83 16
14 C -0.09 -1.76 10.06 -39.52 -0.40 -2.16 16
15 C -0.16 -3.11 9.97 -39.95 -0.40 -3.51 16
16 C -0.15 -2.97 10.02 -39.49 -0.40 -3.36 16
17 C -0.06 -1.30 8.55 -39.41 -0.34 -1.63 16
18 C 0.10 2.61 6.04 -83.83 -0.51 2.11 16
19 N -0.26 -6.49 2.81 -56.08 -0.16 -6.65 16
20 C -0.38 -8.83 7.70 -15.01 -0.12 -8.95 16
21 H 0.11 2.39 6.43 -52.49 -0.34 2.05 16
22 C 0.06 1.32 4.66 -17.47 -0.08 1.24 16
23 N -0.81 -19.83 10.77 55.50 0.60 -19.23 16
24 Si 0.92 17.15 29.57 -169.99 -5.03 12.13 16
25 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16
26 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16
27 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16
28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16
29 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16
30 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16
31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16
32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16
33 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16
34 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16
35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16
36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16
37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16
38 H 0.06 1.00 6.56 -51.93 -0.34 0.66 16
39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16
40 H 0.42 8.21 4.57 -40.82 -0.19 8.03 16
41 H 0.13 2.89 8.06 -52.48 -0.42 2.47 16
42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16
43 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16
44 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16
45 H 0.11 2.66 6.59 -52.49 -0.35 2.31 16
46 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16
LS Contribution 368.96 15.07 5.56 5.56
Total: -1.00 -27.86 368.96 -9.92 -37.78
By element:
Atomic # 1 Polarization: 21.75 SS G_CDS: -6.86 Total: 14.89 kcal
Atomic # 6 Polarization: -12.55 SS G_CDS: -3.79 Total: -16.33 kcal
Atomic # 7 Polarization: -40.61 SS G_CDS: 0.11 Total: -40.49 kcal
Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.53 kcal
Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.13 kcal
Total LS contribution 5.56 Total: 5.56 kcal
Total: -27.86 -9.92 -37.78 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000597977009.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 32.772 kcal
(2) G-P(sol) polarization free energy of solvation -27.864 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.908 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal
(6) G-S(sol) free energy of system = (1) + (5) -5.009 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.98 seconds