Wall clock time and date at job start Tue Mar 31 2020 12:05:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53003 * 109.46677 * 2 1 4 4 H 1.09005 * 109.46803 * 304.99933 * 3 2 1 5 5 C 1.52999 * 109.47165 * 64.99730 * 3 2 1 6 6 C 1.53002 * 109.46994 * 185.00052 * 3 2 1 7 7 C 1.52994 * 109.46946 * 174.99930 * 6 3 2 8 8 N 1.46506 * 109.47224 * 179.97438 * 7 6 3 9 9 C 1.34777 * 120.00118 * 177.21967 * 8 7 6 10 10 O 1.21666 * 120.00141 * 5.31854 * 9 8 7 11 11 C 1.46882 * 119.99846 * 185.32037 * 9 8 7 12 12 C 1.36122 * 125.43840 * 186.42489 * 11 9 8 13 13 C 1.41700 * 107.75458 * 180.02562 * 12 11 9 14 14 C 1.40015 * 133.35356 * 180.02562 * 13 12 11 15 15 C 1.36578 * 119.83319 * 179.97438 * 14 13 12 16 16 C 1.38855 * 120.59907 * 359.97397 * 15 14 13 17 17 C 1.37851 * 120.63407 * 0.29469 * 16 15 14 18 18 C 1.39090 * 119.80770 * 359.46227 * 17 16 15 19 19 N 1.37841 * 133.16016 * 180.19284 * 18 17 16 20 20 C 1.36889 * 125.61926 * 0.26426 * 19 18 17 21 21 H 1.08001 * 120.00266 * 222.03219 * 20 19 18 22 22 C 1.39012 * 120.00021 * 42.04307 * 20 19 18 23 23 N 1.31351 * 120.00305 * 11.29760 * 22 20 19 24 24 Si 1.86804 * 120.00097 * 191.30571 * 22 20 19 25 25 H 1.48503 * 109.46879 * 359.97438 * 24 22 20 26 26 H 1.48499 * 109.47125 * 119.99269 * 24 22 20 27 27 H 1.48496 * 109.47047 * 239.99742 * 24 22 20 28 28 H 1.08995 * 109.47481 * 60.00562 * 1 2 3 29 29 H 1.09007 * 109.46956 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.47413 * 299.99671 * 1 2 3 31 31 H 1.08993 * 109.47413 * 240.00329 * 2 1 3 32 32 H 1.08996 * 109.46979 * 119.99589 * 2 1 3 33 33 H 1.09000 * 109.47004 * 179.97438 * 5 3 2 34 34 H 1.09000 * 109.47394 * 300.00182 * 5 3 2 35 35 H 1.09005 * 109.47094 * 60.00381 * 5 3 2 36 36 H 1.08997 * 109.47142 * 54.99689 * 6 3 2 37 37 H 1.08997 * 109.46740 * 295.00186 * 6 3 2 38 38 H 1.08997 * 109.47397 * 59.99915 * 7 6 3 39 39 H 1.08997 * 109.47610 * 299.99723 * 7 6 3 40 40 H 0.96996 * 119.99714 * 357.22196 * 8 7 6 41 41 H 1.08004 * 126.12191 * 0.06439 * 12 11 9 42 42 H 1.08002 * 120.08602 * 359.97438 * 14 13 12 43 43 H 1.08002 * 119.70446 * 180.02562 * 15 14 13 44 44 H 1.08000 * 119.68174 * 180.02562 * 16 15 14 45 45 H 1.07992 * 120.09520 * 179.69295 * 17 16 15 46 46 H 0.96991 * 120.00357 * 183.49943 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 1 1.6052 1.9815 -0.8419 5 6 1.6350 2.1266 1.3073 6 6 3.5648 1.4445 -0.1257 7 6 4.0643 2.8851 -0.2512 8 7 5.5244 2.8871 -0.3709 9 6 6.1844 4.0485 -0.5500 10 8 5.5794 5.1035 -0.5155 11 6 7.6339 4.0405 -0.7869 12 6 8.4281 5.1437 -0.8584 13 6 9.7544 4.7066 -1.0984 14 6 10.9727 5.3770 -1.2617 15 6 12.1159 4.6640 -1.4859 16 6 12.0824 3.2775 -1.5532 17 6 10.8942 2.5954 -1.4011 18 6 9.7178 3.2995 -1.1667 19 7 8.4092 2.9116 -0.9737 20 6 7.9528 1.6211 -0.9679 21 1 7.0266 1.3736 -1.4652 22 6 8.6813 0.6291 -0.3216 23 7 9.6805 0.9556 0.4660 24 14 8.2395 -1.1684 -0.5735 25 1 7.0836 -1.2688 -1.5003 26 1 9.4026 -1.8876 -1.1525 27 1 7.8807 -1.7776 0.7324 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 1.8934 -0.5137 -0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.9987 3.1542 1.3075 34 1 0.5487 2.1252 1.3969 35 1 2.0697 1.5876 2.1492 36 1 3.8570 0.8802 -1.0113 37 1 4.0028 0.9837 0.7596 38 1 3.7720 3.4494 0.6344 39 1 3.6262 3.3459 -1.1365 40 1 6.0162 2.0525 -0.3214 41 1 8.1051 6.1687 -0.7509 42 1 11.0085 6.4552 -1.2105 43 1 13.0546 5.1832 -1.6111 44 1 12.9953 2.7285 -1.7307 45 1 10.8773 1.5172 -1.4599 46 1 10.2208 0.2626 0.8767 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597977009.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:05:29 Heat of formation + Delta-G solvation = -5.009148 kcal Electronic energy + Delta-G solvation = -26098.252259 eV Core-core repulsion = 22566.145467 eV Total energy + Delta-G solvation = -3532.106792 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -40.47878 -38.64391 -37.29517 -35.91345 -34.33377 -33.56307 -31.08560 -30.67552 -29.08093 -28.38007 -27.53105 -25.30770 -25.00729 -23.01570 -21.53738 -21.01738 -20.23164 -19.86689 -19.11125 -18.14049 -16.45512 -15.69547 -15.64745 -15.50497 -14.87329 -14.85828 -14.60602 -14.24475 -13.96769 -13.68826 -13.38854 -13.08435 -13.03601 -12.95094 -12.54659 -12.48927 -12.07686 -11.94774 -11.80511 -11.77355 -11.65361 -11.43199 -11.20944 -11.06932 -10.79278 -10.72477 -10.65564 -10.58304 -10.49353 -10.24992 -9.80398 -9.36551 -9.27728 -8.66791 -8.44442 -7.24381 -6.87621 -6.57710 -4.70963 1.84375 2.73113 2.90191 2.91996 2.95463 3.15845 3.65423 3.83717 4.24532 4.52360 4.62362 4.72043 4.78551 4.86254 5.07277 5.16848 5.27062 5.40043 5.47385 5.52964 5.64089 5.71222 5.76365 5.83837 5.86756 5.94003 5.95676 5.96794 6.03397 6.09339 6.14165 6.21393 6.37941 6.39304 6.43479 6.56546 6.69052 6.80506 6.91231 7.06566 7.10616 7.12370 7.45187 7.57130 7.63438 7.91499 7.94216 8.25079 8.28488 8.67169 8.98873 9.24823 10.08631 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015024 B = 0.004019 C = 0.003258 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1863.275506 B = 6964.461503 C = 8591.782280 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.121 4.121 3 C -0.087 4.087 4 H 0.072 0.928 5 C -0.153 4.153 6 C -0.129 4.129 7 C 0.119 3.881 8 N -0.731 5.731 9 C 0.595 3.405 10 O -0.560 6.560 11 C -0.019 4.019 12 C -0.165 4.165 13 C -0.134 4.134 14 C -0.085 4.085 15 C -0.161 4.161 16 C -0.146 4.146 17 C -0.056 4.056 18 C 0.105 3.895 19 N -0.260 5.260 20 C -0.375 4.375 21 H 0.109 0.891 22 C 0.058 3.942 23 N -0.814 5.814 24 Si 0.923 3.077 25 H -0.260 1.260 26 H -0.270 1.270 27 H -0.272 1.272 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.056 0.944 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.054 0.946 36 H 0.069 0.931 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.416 0.584 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.113 0.887 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.557 -3.819 -0.538 9.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.106 4.106 4 H 0.090 0.910 5 C -0.210 4.210 6 C -0.167 4.167 7 C -0.005 4.005 8 N -0.390 5.390 9 C 0.385 3.615 10 O -0.439 6.439 11 C -0.134 4.134 12 C -0.193 4.193 13 C -0.138 4.138 14 C -0.104 4.104 15 C -0.180 4.180 16 C -0.167 4.167 17 C -0.076 4.076 18 C -0.010 4.010 19 N 0.076 4.924 20 C -0.502 4.502 21 H 0.126 0.874 22 C -0.156 4.156 23 N -0.442 5.442 24 Si 0.746 3.254 25 H -0.184 1.184 26 H -0.195 1.195 27 H -0.197 1.197 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.075 0.925 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.261 0.739 41 H 0.150 0.850 42 H 0.123 0.877 43 H 0.121 0.879 44 H 0.123 0.877 45 H 0.131 0.869 46 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -9.068 -3.569 -0.311 9.750 hybrid contribution 0.236 -1.353 0.126 1.379 sum -8.832 -4.922 -0.185 10.113 Atomic orbital electron populations 1.21819 0.96030 1.01325 1.01858 1.21581 0.95725 0.96370 1.02140 1.21083 0.94634 0.96215 0.98710 0.90961 1.21965 1.01022 1.00956 0.97050 1.21866 0.95422 0.96479 1.02965 1.21308 0.81134 0.96505 1.01601 1.46675 1.07080 1.11255 1.74025 1.17264 0.85348 0.83419 0.75503 1.90708 1.68548 1.31349 1.53334 1.20109 0.91079 0.88035 1.14197 1.20384 0.91068 0.96787 1.11042 1.18029 0.93469 0.92887 1.09448 1.20060 0.91282 0.98006 1.01065 1.20267 0.97045 0.94119 1.06595 1.20577 0.96439 0.94071 1.05591 1.20071 0.89805 0.98874 0.98808 1.18205 0.86376 0.92095 1.04359 1.39945 1.04094 1.03870 1.44445 1.19617 1.11390 0.82048 1.37184 0.87373 1.25666 0.95740 1.01375 0.92850 1.69969 1.16112 1.35626 1.22465 0.85927 0.79753 0.80660 0.79054 1.18367 1.19452 1.19712 0.92834 0.93046 0.92512 0.91948 0.91940 0.92165 0.92640 0.92661 0.91192 0.91138 0.91880 0.92069 0.73924 0.85022 0.87748 0.87921 0.87711 0.86868 0.90611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.67 37.16 0.36 -0.89 16 2 C -0.12 -1.13 5.40 -26.73 -0.14 -1.27 16 3 C -0.09 -0.91 2.39 -90.62 -0.22 -1.13 16 4 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 5 C -0.15 -1.54 8.70 37.16 0.32 -1.21 16 6 C -0.13 -1.63 4.80 -26.73 -0.13 -1.76 16 7 C 0.12 1.86 5.44 -4.04 -0.02 1.84 16 8 N -0.73 -14.29 5.32 -61.56 -0.33 -14.62 16 9 C 0.60 13.66 7.76 -12.76 -0.10 13.56 16 10 O -0.56 -13.61 16.86 5.22 0.09 -13.53 16 11 C -0.02 -0.47 6.77 -82.25 -0.56 -1.03 16 12 C -0.16 -3.92 10.55 -39.02 -0.41 -4.33 16 13 C -0.13 -3.17 6.16 -106.89 -0.66 -3.83 16 14 C -0.09 -1.76 10.06 -39.52 -0.40 -2.16 16 15 C -0.16 -3.11 9.97 -39.95 -0.40 -3.51 16 16 C -0.15 -2.97 10.02 -39.49 -0.40 -3.36 16 17 C -0.06 -1.30 8.55 -39.41 -0.34 -1.63 16 18 C 0.10 2.61 6.04 -83.83 -0.51 2.11 16 19 N -0.26 -6.49 2.81 -56.08 -0.16 -6.65 16 20 C -0.38 -8.83 7.70 -15.01 -0.12 -8.95 16 21 H 0.11 2.39 6.43 -52.49 -0.34 2.05 16 22 C 0.06 1.32 4.66 -17.47 -0.08 1.24 16 23 N -0.81 -19.83 10.77 55.50 0.60 -19.23 16 24 Si 0.92 17.15 29.57 -169.99 -5.03 12.13 16 25 H -0.26 -4.65 7.11 56.52 0.40 -4.24 16 26 H -0.27 -5.04 7.11 56.52 0.40 -4.63 16 27 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 28 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.05 0.38 8.14 -51.92 -0.42 -0.04 16 30 H 0.06 0.44 6.56 -51.93 -0.34 0.10 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.65 6.56 -51.93 -0.34 0.31 16 34 H 0.05 0.49 6.56 -51.93 -0.34 0.15 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.06 1.00 6.56 -51.93 -0.34 0.66 16 39 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.42 8.21 4.57 -40.82 -0.19 8.03 16 41 H 0.13 2.89 8.06 -52.48 -0.42 2.47 16 42 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 43 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 44 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.11 2.66 6.59 -52.49 -0.35 2.31 16 46 H 0.28 6.39 8.31 -40.82 -0.34 6.05 16 LS Contribution 368.96 15.07 5.56 5.56 Total: -1.00 -27.86 368.96 -9.92 -37.78 By element: Atomic # 1 Polarization: 21.75 SS G_CDS: -6.86 Total: 14.89 kcal Atomic # 6 Polarization: -12.55 SS G_CDS: -3.79 Total: -16.33 kcal Atomic # 7 Polarization: -40.61 SS G_CDS: 0.11 Total: -40.49 kcal Atomic # 8 Polarization: -13.61 SS G_CDS: 0.09 Total: -13.53 kcal Atomic # 14 Polarization: 17.15 SS G_CDS: -5.03 Total: 12.13 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -27.86 -9.92 -37.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597977009.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.772 kcal (2) G-P(sol) polarization free energy of solvation -27.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.009 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds