Wall clock time and date at job start Tue Mar 31 2020 12:03:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47081 * 2 1 4 4 H 1.08996 * 109.47234 * 304.99981 * 3 2 1 5 5 C 1.53008 * 109.47190 * 64.99857 * 3 2 1 6 6 C 1.53004 * 109.47511 * 184.99739 * 3 2 1 7 7 C 1.50703 * 109.47176 * 174.99845 * 6 3 2 8 8 N 1.29942 * 126.28307 * 89.97755 * 7 6 3 9 9 O 1.21307 * 110.24997 * 179.97438 * 8 7 6 10 10 C 1.33642 * 109.80769 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.54939 * 179.97438 * 10 9 8 12 12 C 1.52992 * 109.47231 * 270.02635 * 11 10 9 13 13 H 1.09000 * 109.47071 * 54.99849 * 12 11 10 14 14 C 1.50704 * 109.47415 * 295.00046 * 12 11 10 15 15 H 1.07992 * 119.99990 * 121.22187 * 14 12 11 16 16 C 1.37882 * 119.99574 * 301.22783 * 14 12 11 17 17 N 1.31514 * 120.00188 * 6.48547 * 16 14 12 18 18 Si 1.86800 * 119.99431 * 186.48659 * 16 14 12 19 19 H 1.48499 * 109.47124 * 90.00286 * 18 16 14 20 20 H 1.48504 * 109.46650 * 209.99424 * 18 16 14 21 21 H 1.48495 * 109.47422 * 329.99746 * 18 16 14 22 22 C 1.50694 * 109.47196 * 174.99829 * 12 11 10 23 23 C 1.38242 * 120.00170 * 211.51524 * 22 12 11 24 24 C 1.38234 * 120.00012 * 179.80763 * 23 22 12 25 25 C 1.38239 * 119.99862 * 0.40504 * 24 23 22 26 26 C 1.38229 * 120.00065 * 359.85235 * 25 24 23 27 27 C 1.38237 * 120.00329 * 359.95889 * 26 25 24 28 28 N 1.31133 * 106.89668 * 0.22456 * 10 9 8 29 29 H 1.09001 * 109.47485 * 299.99788 * 1 2 3 30 30 H 1.08997 * 109.46875 * 60.00301 * 1 2 3 31 31 H 1.09003 * 109.46589 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47682 * 239.99964 * 2 1 3 33 33 H 1.09002 * 109.47247 * 119.99973 * 2 1 3 34 34 H 1.09000 * 109.47047 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46755 * 299.99816 * 5 3 2 36 36 H 1.08996 * 109.46931 * 59.99937 * 5 3 2 37 37 H 1.08998 * 109.46852 * 54.99586 * 6 3 2 38 38 H 1.08998 * 109.47060 * 295.00053 * 6 3 2 39 39 H 1.09001 * 109.47234 * 150.02088 * 11 10 9 40 40 H 1.09004 * 109.47056 * 30.02975 * 11 10 9 41 41 H 0.97000 * 119.99955 * 180.02562 * 17 16 14 42 42 H 1.07996 * 119.99706 * 0.02562 * 23 22 12 43 43 H 1.07998 * 120.00283 * 180.23571 * 24 23 22 44 44 H 1.08004 * 119.99681 * 179.83410 * 25 24 23 45 45 H 1.08003 * 119.99780 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00092 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8635 -0.2492 8 7 4.3934 3.6487 0.7299 9 8 4.7472 4.7268 0.3010 10 6 4.6681 4.7315 -1.0331 11 6 5.0156 5.8769 -1.9487 12 6 3.7749 6.7428 -2.1758 13 1 3.3734 7.0617 -1.2139 14 6 2.7329 5.9436 -2.9150 15 1 1.7588 5.7888 -2.4753 16 6 3.0233 5.4099 -4.1527 17 7 4.2455 5.4880 -4.6322 18 14 1.6808 4.5761 -5.1486 19 1 1.0108 5.5796 -6.0142 20 1 2.2802 3.5135 -5.9953 21 1 0.6842 3.9722 -4.2280 22 6 4.1499 7.9542 -2.9900 23 6 3.4781 9.1478 -2.8030 24 6 3.8247 10.2600 -3.5471 25 6 4.8377 10.1764 -4.4841 26 6 5.5059 8.9815 -4.6748 27 6 5.1619 7.8703 -3.9280 28 7 4.2252 3.5508 -1.3928 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9981 3.1544 1.3072 35 1 0.5488 2.1253 1.3969 36 1 2.0698 1.5875 2.1492 37 1 3.8571 0.8801 -1.0112 38 1 4.0029 0.9837 0.7597 39 1 5.3653 5.4853 -2.9039 40 1 5.8015 6.4801 -1.4939 41 1 4.4497 5.1129 -5.5031 42 1 2.6847 9.2122 -2.0731 43 1 3.3024 11.1935 -3.3983 44 1 5.1067 11.0447 -5.0674 45 1 6.2970 8.9161 -5.4072 46 1 5.6843 6.9368 -4.0768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601399965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:56 Heat of formation + Delta-G solvation = 69.268855 kcal Electronic energy + Delta-G solvation = -26438.862739 eV Core-core repulsion = 22909.976883 eV Total energy + Delta-G solvation = -3528.885857 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -44.68873 -38.42536 -37.28098 -35.28895 -34.51433 -32.23610 -31.06530 -30.14801 -29.84404 -28.18654 -27.47658 -25.93505 -24.22555 -23.03058 -22.31650 -21.48713 -20.52776 -19.91095 -19.54122 -17.26511 -16.74983 -16.13941 -15.80351 -15.26132 -15.01507 -14.61549 -14.25759 -14.02661 -13.92738 -13.44601 -13.22526 -13.11580 -12.50787 -12.36810 -12.26109 -12.08560 -11.89085 -11.69757 -11.62318 -11.50397 -11.30664 -11.08821 -10.98928 -10.87315 -10.57090 -10.55389 -10.50360 -10.46788 -10.23429 -10.07887 -9.99690 -9.51335 -9.34205 -8.88604 -8.53498 -7.87919 -7.53564 -6.10471 -4.23065 2.01231 2.40501 2.49192 3.13061 3.27768 3.34312 3.37502 3.79211 4.32916 4.36738 4.74319 4.87966 4.92970 5.00602 5.03528 5.17465 5.36682 5.54696 5.57652 5.71994 5.74781 5.76867 5.79368 5.85267 5.93584 5.97170 6.00903 6.07209 6.13710 6.17614 6.29966 6.37186 6.42563 6.45569 6.49251 6.60198 6.63873 6.68698 6.91599 6.95273 7.04740 7.19316 7.36222 7.44032 7.61917 7.82542 7.97094 8.05751 8.16208 8.73565 9.05457 9.45966 10.84993 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.004179 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.231663 B = 6697.869242 C = 7609.611599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.116 4.116 3 C -0.089 4.089 4 H 0.079 0.921 5 C -0.146 4.146 6 C -0.019 4.019 7 C 0.161 3.839 8 N -0.409 5.409 9 O 0.048 5.952 10 C 0.231 3.769 11 C -0.040 4.040 12 C 0.082 3.918 13 H 0.034 0.966 14 C -0.502 4.502 15 H 0.056 0.944 16 C 0.085 3.915 17 N -0.876 5.876 18 Si 0.893 3.107 19 H -0.283 1.283 20 H -0.285 1.285 21 H -0.275 1.275 22 C -0.031 4.031 23 C -0.129 4.129 24 C -0.141 4.141 25 C -0.151 4.151 26 C -0.142 4.142 27 C -0.077 4.077 28 N -0.463 5.463 29 H 0.056 0.944 30 H 0.055 0.945 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.061 0.939 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.052 0.948 37 H 0.089 0.911 38 H 0.081 0.919 39 H 0.151 0.849 40 H 0.060 0.940 41 H 0.265 0.735 42 H 0.106 0.894 43 H 0.102 0.898 44 H 0.100 0.900 45 H 0.103 0.897 46 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.020 -3.581 5.625 6.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.109 4.109 4 H 0.098 0.902 5 C -0.203 4.203 6 C -0.058 4.058 7 C -0.112 4.112 8 N -0.122 5.122 9 O -0.007 6.007 10 C 0.011 3.989 11 C -0.080 4.080 12 C 0.062 3.938 13 H 0.053 0.947 14 C -0.539 4.539 15 H 0.074 0.926 16 C -0.118 4.118 17 N -0.513 5.513 18 Si 0.722 3.278 19 H -0.209 1.209 20 H -0.211 1.211 21 H -0.200 1.200 22 C -0.031 4.031 23 C -0.147 4.147 24 C -0.160 4.160 25 C -0.169 4.169 26 C -0.160 4.160 27 C -0.096 4.096 28 N -0.196 5.196 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.080 0.920 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.071 0.929 37 H 0.108 0.892 38 H 0.100 0.900 39 H 0.169 0.831 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.124 0.876 43 H 0.120 0.880 44 H 0.118 0.882 45 H 0.121 0.879 46 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -0.039 -4.212 6.001 7.332 hybrid contribution -0.886 -0.171 -0.887 1.265 sum -0.925 -4.383 5.115 6.799 Atomic orbital electron populations 1.21815 0.95846 1.01261 1.02162 1.21531 0.96029 0.95850 1.01911 1.21143 0.93660 0.96580 0.99472 0.90214 1.21873 1.00911 1.01022 0.96521 1.19917 0.95548 0.86910 1.03389 1.25718 1.00772 0.99816 0.84921 1.74483 1.20207 0.93717 1.23839 1.85217 1.62585 1.28556 1.24370 1.29189 0.91976 0.96153 0.81535 1.20981 0.99945 0.89916 0.97114 1.17799 0.92257 0.89572 0.94125 0.94738 1.20865 0.98789 1.31264 1.02958 0.92552 1.24712 0.95287 0.94666 0.97110 1.69462 1.18072 1.44930 1.18867 0.86554 0.82157 0.79084 0.80046 1.20905 1.21067 1.20034 1.20155 0.92810 0.93347 0.96814 1.20888 1.00105 0.93103 1.00635 1.20806 0.98949 0.97916 0.98295 1.20814 0.98571 0.97523 1.00015 1.21090 1.00500 0.93711 1.00694 1.21637 0.96943 0.97635 0.93354 1.72054 1.18104 1.03538 1.25886 0.92510 0.92591 0.92985 0.91793 0.92022 0.92493 0.92623 0.92859 0.89221 0.90018 0.83143 0.92104 0.92420 0.87597 0.87968 0.88174 0.87887 0.83253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 9.67 37.16 0.36 -1.26 16 2 C -0.12 -1.29 5.40 -26.73 -0.14 -1.43 16 3 C -0.09 -1.25 2.38 -90.62 -0.22 -1.46 16 4 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 5 C -0.15 -2.02 8.76 37.16 0.33 -1.69 16 6 C -0.02 -0.28 5.32 -27.88 -0.15 -0.43 16 7 C 0.16 3.07 6.68 -156.38 -1.05 2.03 16 8 N -0.41 -8.02 11.46 30.90 0.35 -7.66 16 9 O 0.05 0.96 11.31 18.10 0.20 1.16 16 10 C 0.23 4.87 7.21 -13.06 -0.09 4.77 16 11 C -0.04 -0.83 4.37 -27.89 -0.12 -0.96 16 12 C 0.08 1.83 2.32 -92.93 -0.22 1.61 16 13 H 0.03 0.75 8.08 -51.93 -0.42 0.33 16 14 C -0.50 -12.48 8.09 -34.44 -0.28 -12.76 16 15 H 0.06 1.47 7.82 -52.49 -0.41 1.06 16 16 C 0.09 2.12 5.14 -17.82 -0.09 2.02 16 17 N -0.88 -21.28 7.73 55.43 0.43 -20.85 16 18 Si 0.89 20.76 29.54 -169.99 -5.02 15.74 16 19 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 22 C -0.03 -0.65 4.68 -104.62 -0.49 -1.14 16 23 C -0.13 -2.58 9.70 -39.58 -0.38 -2.96 16 24 C -0.14 -2.57 10.05 -39.58 -0.40 -2.97 16 25 C -0.15 -2.70 10.05 -39.58 -0.40 -3.09 16 26 C -0.14 -2.68 10.05 -39.59 -0.40 -3.08 16 27 C -0.08 -1.61 7.56 -39.58 -0.30 -1.91 16 28 N -0.46 -10.10 11.50 -9.87 -0.11 -10.21 16 29 H 0.06 0.58 6.57 -51.93 -0.34 0.24 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.06 0.94 6.84 -51.93 -0.36 0.58 16 35 H 0.05 0.70 6.56 -51.93 -0.34 0.35 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.09 1.28 8.14 -51.93 -0.42 0.85 16 38 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.15 3.38 4.65 -51.93 -0.24 3.14 16 40 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 41 H 0.27 6.36 8.31 -40.82 -0.34 6.02 16 42 H 0.11 1.98 8.06 -52.49 -0.42 1.55 16 43 H 0.10 1.58 8.06 -52.49 -0.42 1.16 16 44 H 0.10 1.52 8.06 -52.48 -0.42 1.09 16 45 H 0.10 1.72 8.06 -52.48 -0.42 1.30 16 46 H 0.15 3.22 4.96 -52.49 -0.26 2.96 16 LS Contribution 369.57 15.07 5.57 5.57 Total: -1.00 -26.08 369.57 -9.61 -35.69 By element: Atomic # 1 Polarization: 12.26 SS G_CDS: -7.00 Total: 5.26 kcal Atomic # 6 Polarization: -20.67 SS G_CDS: -4.04 Total: -24.70 kcal Atomic # 7 Polarization: -39.40 SS G_CDS: 0.67 Total: -38.73 kcal Atomic # 8 Polarization: 0.96 SS G_CDS: 0.20 Total: 1.16 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -26.08 -9.61 -35.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601399965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.960 kcal (2) G-P(sol) polarization free energy of solvation -26.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds