Wall clock time and date at job start Tue Mar 31 2020 12:03:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47081 * 2 1 4 4 H 1.08996 * 109.47234 * 304.99981 * 3 2 1 5 5 C 1.53008 * 109.47190 * 64.99857 * 3 2 1 6 6 C 1.53004 * 109.47511 * 184.99739 * 3 2 1 7 7 C 1.50703 * 109.47176 * 174.99845 * 6 3 2 8 8 N 1.29942 * 126.28307 * 89.97755 * 7 6 3 9 9 O 1.21307 * 110.24997 * 179.97438 * 8 7 6 10 10 C 1.33642 * 109.80769 * 359.97438 * 9 8 7 11 11 C 1.50700 * 126.54939 * 179.97438 * 10 9 8 12 12 C 1.52992 * 109.47231 * 270.02635 * 11 10 9 13 13 H 1.09000 * 109.47071 * 54.99849 * 12 11 10 14 14 C 1.50704 * 109.47415 * 295.00046 * 12 11 10 15 15 H 1.07992 * 119.99990 * 121.22187 * 14 12 11 16 16 C 1.37882 * 119.99574 * 301.22783 * 14 12 11 17 17 N 1.31514 * 120.00188 * 6.48547 * 16 14 12 18 18 Si 1.86800 * 119.99431 * 186.48659 * 16 14 12 19 19 H 1.48499 * 109.47124 * 90.00286 * 18 16 14 20 20 H 1.48504 * 109.46650 * 209.99424 * 18 16 14 21 21 H 1.48495 * 109.47422 * 329.99746 * 18 16 14 22 22 C 1.50694 * 109.47196 * 174.99829 * 12 11 10 23 23 C 1.38242 * 120.00170 * 211.51524 * 22 12 11 24 24 C 1.38234 * 120.00012 * 179.80763 * 23 22 12 25 25 C 1.38239 * 119.99862 * 0.40504 * 24 23 22 26 26 C 1.38229 * 120.00065 * 359.85235 * 25 24 23 27 27 C 1.38237 * 120.00329 * 359.95889 * 26 25 24 28 28 N 1.31133 * 106.89668 * 0.22456 * 10 9 8 29 29 H 1.09001 * 109.47485 * 299.99788 * 1 2 3 30 30 H 1.08997 * 109.46875 * 60.00301 * 1 2 3 31 31 H 1.09003 * 109.46589 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47682 * 239.99964 * 2 1 3 33 33 H 1.09002 * 109.47247 * 119.99973 * 2 1 3 34 34 H 1.09000 * 109.47047 * 180.02562 * 5 3 2 35 35 H 1.09001 * 109.46755 * 299.99816 * 5 3 2 36 36 H 1.08996 * 109.46931 * 59.99937 * 5 3 2 37 37 H 1.08998 * 109.46852 * 54.99586 * 6 3 2 38 38 H 1.08998 * 109.47060 * 295.00053 * 6 3 2 39 39 H 1.09001 * 109.47234 * 150.02088 * 11 10 9 40 40 H 1.09004 * 109.47056 * 30.02975 * 11 10 9 41 41 H 0.97000 * 119.99955 * 180.02562 * 17 16 14 42 42 H 1.07996 * 119.99706 * 0.02562 * 23 22 12 43 43 H 1.07998 * 120.00283 * 180.23571 * 24 23 22 44 44 H 1.08004 * 119.99681 * 179.83410 * 25 24 23 45 45 H 1.08003 * 119.99780 * 179.97438 * 26 25 24 46 46 H 1.07998 * 120.00092 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 -0.8418 5 6 1.6352 2.1266 1.3074 6 6 3.5648 1.4444 -0.1257 7 6 4.0569 2.8635 -0.2492 8 7 4.3934 3.6487 0.7299 9 8 4.7472 4.7268 0.3010 10 6 4.6681 4.7315 -1.0331 11 6 5.0156 5.8769 -1.9487 12 6 3.7749 6.7428 -2.1758 13 1 3.3734 7.0617 -1.2139 14 6 2.7329 5.9436 -2.9150 15 1 1.7588 5.7888 -2.4753 16 6 3.0233 5.4099 -4.1527 17 7 4.2455 5.4880 -4.6322 18 14 1.6808 4.5761 -5.1486 19 1 1.0108 5.5796 -6.0142 20 1 2.2802 3.5135 -5.9953 21 1 0.6842 3.9722 -4.2280 22 6 4.1499 7.9542 -2.9900 23 6 3.4781 9.1478 -2.8030 24 6 3.8247 10.2600 -3.5471 25 6 4.8377 10.1764 -4.4841 26 6 5.5059 8.9815 -4.6748 27 6 5.1619 7.8703 -3.9280 28 7 4.2252 3.5508 -1.3928 29 1 -0.3634 0.5138 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3632 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 1.9981 3.1544 1.3072 35 1 0.5488 2.1253 1.3969 36 1 2.0698 1.5875 2.1492 37 1 3.8571 0.8801 -1.0112 38 1 4.0029 0.9837 0.7597 39 1 5.3653 5.4853 -2.9039 40 1 5.8015 6.4801 -1.4939 41 1 4.4497 5.1129 -5.5031 42 1 2.6847 9.2122 -2.0731 43 1 3.3024 11.1935 -3.3983 44 1 5.1067 11.0447 -5.0674 45 1 6.2970 8.9161 -5.4072 46 1 5.6843 6.9368 -4.0768 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601399965.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:03:55 Heat of formation + Delta-G solvation = 58.256531 kcal Electronic energy + Delta-G solvation = -26439.340269 eV Core-core repulsion = 22909.976883 eV Total energy + Delta-G solvation = -3529.363387 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -46.27106 -39.97210 -38.44280 -36.93045 -36.03197 -33.87081 -32.70385 -31.41903 -31.23403 -29.75845 -28.67167 -27.73869 -25.38608 -24.68865 -23.80487 -22.96787 -21.98755 -21.29592 -20.90713 -18.84600 -18.45632 -17.79686 -17.38121 -16.84382 -16.36978 -15.79080 -15.62304 -15.47216 -15.42429 -14.90912 -14.82344 -14.32884 -13.88386 -13.76222 -13.71971 -13.43657 -13.30426 -13.14296 -13.01886 -12.89509 -12.82126 -12.69244 -12.53302 -12.29345 -12.22812 -12.05369 -11.80795 -11.63981 -11.62962 -11.57917 -11.45259 -11.16506 -11.07441 -10.52148 -10.38979 -9.38945 -9.11353 -7.98418 -6.15738 0.40299 0.88834 0.99558 1.38022 1.42065 1.47201 1.55141 2.15665 2.45586 2.94987 3.22608 3.30765 3.37135 3.83650 3.90354 3.95192 4.27503 4.35883 4.41504 4.43505 4.47040 4.53792 4.59518 4.61348 4.66708 4.76316 4.79761 4.84061 4.91049 4.94385 5.03705 5.05913 5.11695 5.14707 5.17056 5.19386 5.28658 5.34166 5.42550 5.47418 5.52563 5.61718 5.68145 5.88352 5.94775 6.10425 6.26757 6.38639 6.57035 6.80637 7.44856 7.52552 8.92418 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015645 B = 0.004179 C = 0.003679 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1789.231663 B = 6697.869242 C = 7609.611599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.109 4.109 3 C -0.085 4.085 4 H 0.045 0.955 5 C -0.141 4.141 6 C -0.020 4.020 7 C 0.163 3.837 8 N -0.413 5.413 9 O 0.042 5.958 10 C 0.225 3.775 11 C -0.031 4.031 12 C 0.085 3.915 13 H 0.026 0.974 14 C -0.515 4.515 15 H 0.031 0.969 16 C 0.062 3.938 17 N -0.873 5.873 18 Si 0.924 3.076 19 H -0.283 1.283 20 H -0.282 1.282 21 H -0.286 1.286 22 C -0.051 4.051 23 C -0.145 4.145 24 C -0.140 4.140 25 C -0.147 4.147 26 C -0.147 4.147 27 C -0.092 4.092 28 N -0.493 5.493 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.083 0.917 34 H 0.024 0.976 35 H 0.066 0.934 36 H 0.071 0.929 37 H 0.097 0.903 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.083 0.917 41 H 0.264 0.736 42 H 0.110 0.890 43 H 0.133 0.867 44 H 0.135 0.865 45 H 0.124 0.876 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.265 -3.556 5.654 6.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.146 4.146 3 C -0.105 4.105 4 H 0.063 0.937 5 C -0.199 4.199 6 C -0.059 4.059 7 C -0.110 4.110 8 N -0.128 5.128 9 O -0.010 6.010 10 C 0.006 3.994 11 C -0.070 4.070 12 C 0.065 3.935 13 H 0.045 0.955 14 C -0.552 4.552 15 H 0.049 0.951 16 C -0.140 4.140 17 N -0.510 5.510 18 Si 0.753 3.247 19 H -0.210 1.210 20 H -0.207 1.207 21 H -0.212 1.212 22 C -0.052 4.052 23 C -0.164 4.164 24 C -0.158 4.158 25 C -0.165 4.165 26 C -0.166 4.166 27 C -0.110 4.110 28 N -0.227 5.227 29 H 0.078 0.922 30 H 0.059 0.941 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.043 0.957 35 H 0.085 0.915 36 H 0.090 0.910 37 H 0.115 0.885 38 H 0.125 0.875 39 H 0.154 0.846 40 H 0.101 0.899 41 H 0.074 0.926 42 H 0.128 0.872 43 H 0.151 0.849 44 H 0.152 0.848 45 H 0.142 0.858 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 0.220 -4.167 6.032 7.334 hybrid contribution -0.975 -0.131 -0.876 1.317 sum -0.754 -4.299 5.155 6.755 Atomic orbital electron populations 1.21824 0.95416 1.02320 1.01566 1.21501 0.96344 0.93589 1.03210 1.21103 0.92840 0.98370 0.98165 0.93687 1.21836 1.01688 0.99226 0.97106 1.20184 0.96167 0.84592 1.04924 1.26417 0.99573 1.01125 0.83915 1.74457 1.20751 0.93634 1.23924 1.85198 1.62838 1.29030 1.23935 1.29248 0.92015 0.96230 0.81923 1.20818 0.99858 0.89757 0.96589 1.17713 0.92137 0.90075 0.93604 0.95516 1.20843 0.98430 1.32479 1.03483 0.95071 1.25005 0.96274 0.95173 0.97558 1.69563 1.17969 1.44783 1.18660 0.86088 0.80942 0.78552 0.79121 1.20980 1.20715 1.21160 1.20121 0.94039 0.93550 0.97502 1.21090 1.00356 0.93457 1.01453 1.21172 0.98826 0.98387 0.97405 1.21223 0.97556 0.98163 0.99557 1.21374 1.01060 0.93525 1.00593 1.21576 0.97218 0.98097 0.94110 1.72045 1.18909 1.04288 1.27423 0.92220 0.94135 0.91081 0.91314 0.89855 0.95727 0.91548 0.90976 0.88473 0.87505 0.84623 0.89895 0.92576 0.87235 0.84919 0.84763 0.85784 0.84504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.99 9.67 71.98 0.70 -2.30 16 2 C -0.11 -2.21 5.40 30.59 0.17 -2.04 16 3 C -0.08 -2.34 2.38 -10.79 -0.03 -2.36 16 4 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 5 C -0.14 -3.81 8.76 71.98 0.63 -3.18 16 6 C -0.02 -0.58 5.32 29.85 0.16 -0.42 16 7 C 0.16 6.27 6.68 138.47 0.93 7.20 16 8 N -0.41 -16.31 11.46 -60.32 -0.69 -17.00 16 9 O 0.04 1.75 11.31 74.83 0.85 2.59 16 10 C 0.23 9.75 7.21 88.38 0.64 10.38 16 11 C -0.03 -1.31 4.37 29.85 0.13 -1.18 16 12 C 0.08 3.86 2.32 -12.29 -0.03 3.83 16 13 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 14 C -0.52 -26.49 8.09 25.60 0.21 -26.29 16 15 H 0.03 1.71 7.82 -2.91 -0.02 1.69 16 16 C 0.06 3.16 5.14 84.66 0.43 3.59 16 17 N -0.87 -42.91 7.73 21.45 0.17 -42.75 16 18 Si 0.92 43.08 29.54 68.60 2.03 45.11 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 20 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 21 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 22 C -0.05 -2.21 4.68 -19.87 -0.09 -2.31 16 23 C -0.15 -5.70 9.70 22.27 0.22 -5.49 16 24 C -0.14 -4.72 10.05 22.27 0.22 -4.50 16 25 C -0.15 -4.79 10.05 22.27 0.22 -4.56 16 26 C -0.15 -5.28 10.05 22.27 0.22 -5.06 16 27 C -0.09 -3.78 7.56 22.27 0.17 -3.61 16 28 N -0.49 -22.03 11.50 -303.20 -3.49 -25.51 16 29 H 0.06 1.11 6.57 -2.39 -0.02 1.10 16 30 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 31 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 34 H 0.02 0.80 6.84 -2.39 -0.02 0.79 16 35 H 0.07 1.61 6.56 -2.39 -0.02 1.60 16 36 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.10 2.67 8.14 -2.39 -0.02 2.65 16 38 H 0.11 2.56 8.14 -2.39 -0.02 2.54 16 39 H 0.14 6.26 4.65 -2.39 -0.01 6.25 16 40 H 0.08 3.06 8.14 -2.39 -0.02 3.04 16 41 H 0.26 12.72 8.31 -92.71 -0.77 11.95 16 42 H 0.11 4.09 8.06 -2.91 -0.02 4.06 16 43 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 44 H 0.13 3.45 8.06 -2.91 -0.02 3.43 16 45 H 0.12 3.84 8.06 -2.91 -0.02 3.81 16 46 H 0.14 5.95 4.96 -2.91 -0.01 5.94 16 Total: -1.00 -56.79 369.57 4.72 -52.07 By element: Atomic # 1 Polarization: 22.83 SS G_CDS: 0.97 Total: 23.80 kcal Atomic # 6 Polarization: -43.19 SS G_CDS: 4.89 Total: -38.30 kcal Atomic # 7 Polarization: -81.25 SS G_CDS: -4.01 Total: -85.27 kcal Atomic # 8 Polarization: 1.75 SS G_CDS: 0.85 Total: 2.59 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -56.79 4.72 -52.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601399965.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.325 kcal (2) G-P(sol) polarization free energy of solvation -56.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.537 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.068 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds