Wall clock time and date at job start Tue Mar 31 2020 12:04:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 H 1.08993 * 109.47140 * 54.99886 * 3 2 1 5 5 C 1.53010 * 109.47094 * 295.00073 * 3 2 1 6 6 C 1.52999 * 109.47434 * 175.00244 * 3 2 1 7 7 C 1.50700 * 109.47212 * 184.99705 * 6 3 2 8 8 N 1.29946 * 126.28342 * 89.97685 * 7 6 3 9 9 O 1.21306 * 110.25069 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.80759 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.54762 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47175 * 270.01909 * 11 10 9 13 13 H 1.09001 * 109.46972 * 55.00188 * 12 11 10 14 14 C 1.50694 * 109.47207 * 295.00309 * 12 11 10 15 15 H 1.08008 * 119.99922 * 334.66001 * 14 12 11 16 16 C 1.37872 * 120.00540 * 154.65559 * 14 12 11 17 17 N 1.31511 * 120.00654 * 184.84152 * 16 14 12 18 18 Si 1.86802 * 119.99643 * 4.84773 * 16 14 12 19 19 H 1.48504 * 109.47012 * 84.62518 * 18 16 14 20 20 H 1.48501 * 109.47046 * 204.62333 * 18 16 14 21 21 H 1.48500 * 109.47424 * 324.62416 * 18 16 14 22 22 C 1.50697 * 109.47392 * 174.99991 * 12 11 10 23 23 C 1.38238 * 119.99663 * 55.29250 * 22 12 11 24 24 C 1.38242 * 119.99427 * 179.81119 * 23 22 12 25 25 C 1.38228 * 120.00301 * 0.39935 * 24 23 22 26 26 C 1.38233 * 120.00227 * 359.85114 * 25 24 23 27 27 C 1.38234 * 119.99778 * 359.96087 * 26 25 24 28 28 N 1.31126 * 106.89926 * 0.22307 * 10 9 8 29 29 H 1.09000 * 109.47574 * 299.99860 * 1 2 3 30 30 H 1.09001 * 109.47535 * 60.00015 * 1 2 3 31 31 H 1.09002 * 109.47486 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47161 * 240.00400 * 2 1 3 33 33 H 1.09001 * 109.47535 * 119.99985 * 2 1 3 34 34 H 1.08999 * 109.46429 * 59.99889 * 5 3 2 35 35 H 1.08993 * 109.46929 * 179.97438 * 5 3 2 36 36 H 1.08993 * 109.46974 * 299.99914 * 5 3 2 37 37 H 1.09004 * 109.47089 * 65.00015 * 6 3 2 38 38 H 1.08995 * 109.46893 * 305.00213 * 6 3 2 39 39 H 1.08999 * 109.47369 * 150.01964 * 11 10 9 40 40 H 1.09004 * 109.47095 * 30.01938 * 11 10 9 41 41 H 0.97001 * 120.00577 * 180.02562 * 17 16 14 42 42 H 1.07994 * 120.00038 * 359.97438 * 23 22 12 43 43 H 1.08001 * 119.99117 * 180.22781 * 24 23 22 44 44 H 1.08002 * 119.99904 * 179.83506 * 25 24 23 45 45 H 1.07995 * 120.00342 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.00351 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6351 2.1266 -1.3074 6 6 3.5647 1.4444 0.1257 7 6 4.0569 2.8634 0.2491 8 7 4.2218 3.5268 1.3543 9 8 4.6306 4.6438 1.1165 10 6 4.7689 4.8041 -0.2031 11 6 5.2497 6.0446 -0.9109 12 6 4.0543 6.9430 -1.2343 13 1 3.4990 7.1521 -0.3199 14 6 3.1536 6.2451 -2.2205 15 1 3.5575 5.4935 -2.8827 16 6 1.8139 6.5659 -2.2775 17 7 1.0094 5.8917 -3.0698 18 14 1.1416 7.9584 -1.2294 19 1 1.3431 9.2500 -1.9340 20 1 -0.3088 7.7443 -0.9932 21 1 1.8560 7.9878 0.0721 22 6 4.5452 8.2370 -1.8307 23 6 5.3605 8.2181 -2.9469 24 6 5.8076 9.4053 -3.4963 25 6 5.4461 10.6108 -2.9248 26 6 4.6350 10.6295 -1.8056 27 6 4.1847 9.4426 -1.2585 28 7 4.4011 3.6776 -0.7645 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5488 2.1252 -1.3969 35 1 1.9981 3.1543 -1.3072 36 1 2.0697 1.5876 -2.1492 37 1 4.0029 0.9837 -0.7598 38 1 3.8570 0.8801 1.0112 39 1 5.7533 5.7631 -1.8357 40 1 5.9456 6.5833 -0.2677 41 1 0.0669 6.1176 -3.1101 42 1 5.6461 7.2761 -3.3911 43 1 6.4417 9.3906 -4.3705 44 1 5.7976 11.5381 -3.3525 45 1 4.3528 11.5714 -1.3588 46 1 3.5513 9.4571 -0.3838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000601399967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:03 Heat of formation + Delta-G solvation = 65.842426 kcal Electronic energy + Delta-G solvation = -26414.251708 eV Core-core repulsion = 22885.217270 eV Total energy + Delta-G solvation = -3529.034438 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -44.88810 -38.78714 -37.21583 -35.40482 -34.58723 -32.44821 -31.55707 -30.32218 -30.17635 -28.68984 -27.18942 -26.04390 -24.14726 -23.08184 -22.52154 -21.92781 -20.82934 -19.84275 -19.35453 -17.44316 -17.07835 -16.67830 -16.20053 -15.08037 -14.94407 -14.56723 -14.44354 -14.25376 -14.02858 -13.82828 -13.18302 -12.93834 -12.88513 -12.66355 -12.48102 -12.37234 -12.00794 -11.94113 -11.71462 -11.68333 -11.35319 -11.18234 -10.96364 -10.84740 -10.79859 -10.58853 -10.40152 -10.38383 -10.26584 -10.18485 -10.04972 -9.75535 -9.36561 -9.11470 -8.66588 -8.29262 -7.90662 -6.15557 -4.15607 1.80477 2.00232 2.07056 2.93899 3.23781 3.28714 3.33316 3.51897 4.21051 4.33410 4.44779 4.59958 4.99324 5.04968 5.12787 5.15706 5.39678 5.44234 5.47488 5.55481 5.60353 5.68899 5.72862 5.77456 5.84978 5.90363 5.92999 5.97028 6.05813 6.12388 6.14536 6.19553 6.24553 6.29973 6.32377 6.48012 6.56214 6.58105 6.64731 6.70703 6.71249 6.83602 7.06138 7.08737 7.13897 7.42243 7.52261 7.67842 8.36987 8.84717 8.92227 9.44358 10.95493 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.004231 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.441107 B = 6615.737534 C = 7477.893799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.087 4.087 4 H 0.068 0.932 5 C -0.146 4.146 6 C -0.020 4.020 7 C 0.171 3.829 8 N -0.405 5.405 9 O 0.058 5.942 10 C 0.216 3.784 11 C -0.010 4.010 12 C 0.040 3.960 13 H 0.051 0.949 14 C -0.501 4.501 15 H 0.088 0.912 16 C 0.083 3.917 17 N -0.883 5.883 18 Si 0.856 3.144 19 H -0.267 1.267 20 H -0.292 1.292 21 H -0.264 1.264 22 C -0.039 4.039 23 C -0.105 4.105 24 C -0.123 4.123 25 C -0.147 4.147 26 C -0.122 4.122 27 C -0.140 4.140 28 N -0.458 5.458 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.063 0.937 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.078 0.922 36 H 0.052 0.948 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.103 0.897 40 H 0.080 0.920 41 H 0.264 0.736 42 H 0.122 0.878 43 H 0.112 0.888 44 H 0.109 0.891 45 H 0.110 0.890 46 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.129 -2.899 4.506 8.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.153 4.153 3 C -0.106 4.106 4 H 0.086 0.914 5 C -0.203 4.203 6 C -0.059 4.059 7 C -0.102 4.102 8 N -0.117 5.117 9 O 0.002 5.998 10 C -0.004 4.004 11 C -0.049 4.049 12 C 0.020 3.980 13 H 0.069 0.931 14 C -0.538 4.538 15 H 0.106 0.894 16 C -0.120 4.120 17 N -0.519 5.519 18 Si 0.684 3.316 19 H -0.192 1.192 20 H -0.218 1.218 21 H -0.189 1.189 22 C -0.039 4.039 23 C -0.123 4.123 24 C -0.141 4.141 25 C -0.166 4.166 26 C -0.140 4.140 27 C -0.158 4.158 28 N -0.190 5.190 29 H 0.071 0.929 30 H 0.080 0.920 31 H 0.069 0.931 32 H 0.082 0.918 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.096 0.904 36 H 0.071 0.929 37 H 0.110 0.890 38 H 0.100 0.900 39 H 0.122 0.878 40 H 0.099 0.901 41 H 0.074 0.926 42 H 0.140 0.860 43 H 0.130 0.870 44 H 0.127 0.873 45 H 0.128 0.872 46 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.681 -3.549 4.877 8.286 hybrid contribution -0.764 1.125 0.371 1.409 sum 4.918 -2.425 5.248 7.589 Atomic orbital electron populations 1.21810 0.95822 1.01127 1.02319 1.21534 0.96106 0.95950 1.01675 1.21172 0.92917 0.96430 1.00104 0.91387 1.21859 1.00841 1.02512 0.95057 1.19986 0.96168 0.86293 1.03469 1.25714 1.00324 0.99976 0.84199 1.74499 1.19560 0.93104 1.24489 1.85210 1.60899 1.25816 1.27885 1.28740 0.94172 0.97320 0.80169 1.20349 0.98987 0.87139 0.98458 1.18466 0.92787 0.88793 0.97993 0.93123 1.20831 0.91903 1.21152 1.19896 0.89443 1.24920 0.96916 0.95373 0.94841 1.69875 1.04703 1.39390 1.37968 0.87236 0.78154 0.84322 0.81886 1.19229 1.21805 1.18878 1.20547 0.92883 0.95649 0.94857 1.20952 0.97850 0.97733 0.95782 1.21059 1.00630 0.92863 0.99577 1.20885 1.00745 0.97444 0.97494 1.20962 0.98667 0.97459 0.96907 1.21065 1.01434 0.92610 1.00677 1.71977 1.16658 1.01123 1.29253 0.92946 0.92046 0.93092 0.91780 0.92326 0.93010 0.90350 0.92880 0.89034 0.90000 0.87839 0.90132 0.92632 0.86050 0.86993 0.87270 0.87236 0.87217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 9.67 37.15 0.36 -1.41 16 2 C -0.12 -1.36 5.40 -26.74 -0.14 -1.50 16 3 C -0.09 -1.29 2.38 -90.61 -0.22 -1.51 16 4 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 5 C -0.15 -2.61 8.76 37.16 0.33 -2.29 16 6 C -0.02 -0.30 5.32 -27.88 -0.15 -0.45 16 7 C 0.17 3.18 6.67 -156.37 -1.04 2.14 16 8 N -0.40 -7.83 12.16 30.90 0.38 -7.46 16 9 O 0.06 1.11 11.31 18.10 0.20 1.32 16 10 C 0.22 4.19 7.21 -13.06 -0.09 4.09 16 11 C -0.01 -0.18 4.98 -27.88 -0.14 -0.32 16 12 C 0.04 0.83 1.58 -92.93 -0.15 0.68 16 13 H 0.05 1.12 5.45 -51.93 -0.28 0.84 16 14 C -0.50 -12.62 8.01 -34.44 -0.28 -12.89 16 15 H 0.09 2.43 8.05 -52.48 -0.42 2.01 16 16 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 17 N -0.88 -25.53 13.96 55.43 0.77 -24.76 16 18 Si 0.86 20.83 24.77 -169.99 -4.21 16.62 16 19 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 21 H -0.26 -6.08 5.95 56.52 0.34 -5.74 16 22 C -0.04 -0.75 4.30 -104.62 -0.45 -1.20 16 23 C -0.11 -1.88 8.94 -39.58 -0.35 -2.24 16 24 C -0.12 -1.96 10.05 -39.58 -0.40 -2.36 16 25 C -0.15 -2.28 10.05 -39.59 -0.40 -2.68 16 26 C -0.12 -2.02 10.05 -39.58 -0.40 -2.41 16 27 C -0.14 -2.62 8.16 -39.58 -0.32 -2.95 16 28 N -0.46 -9.30 10.82 -9.87 -0.11 -9.41 16 29 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.76 6.57 -51.93 -0.34 0.42 16 31 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.05 0.90 6.56 -51.93 -0.34 0.56 16 35 H 0.08 1.76 6.83 -51.93 -0.35 1.41 16 36 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 39 H 0.10 1.72 7.33 -51.93 -0.38 1.34 16 40 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 42 H 0.12 2.08 7.37 -52.49 -0.39 1.69 16 43 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 44 H 0.11 1.38 8.06 -52.49 -0.42 0.96 16 45 H 0.11 1.53 8.06 -52.49 -0.42 1.11 16 46 H 0.11 2.04 6.77 -52.49 -0.36 1.69 16 LS Contribution 370.85 15.07 5.59 5.59 Total: -1.00 -29.25 370.85 -8.45 -37.70 By element: Atomic # 1 Polarization: 12.66 SS G_CDS: -7.14 Total: 5.52 kcal Atomic # 6 Polarization: -21.19 SS G_CDS: -3.94 Total: -25.13 kcal Atomic # 7 Polarization: -42.67 SS G_CDS: 1.04 Total: -41.62 kcal Atomic # 8 Polarization: 1.11 SS G_CDS: 0.20 Total: 1.32 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -4.21 Total: 16.62 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -29.25 -8.45 -37.70 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601399967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 103.545 kcal (2) G-P(sol) polarization free energy of solvation -29.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds