Wall clock time and date at job start Tue Mar 31 2020 12:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.53001 * 109.47188 * 2 1 4 4 H 1.08993 * 109.47140 * 54.99886 * 3 2 1 5 5 C 1.53010 * 109.47094 * 295.00073 * 3 2 1 6 6 C 1.52999 * 109.47434 * 175.00244 * 3 2 1 7 7 C 1.50700 * 109.47212 * 184.99705 * 6 3 2 8 8 N 1.29946 * 126.28342 * 89.97685 * 7 6 3 9 9 O 1.21306 * 110.25069 * 179.97438 * 8 7 6 10 10 C 1.33645 * 109.80759 * 0.02562 * 9 8 7 11 11 C 1.50699 * 126.54762 * 179.97438 * 10 9 8 12 12 C 1.53000 * 109.47175 * 270.01909 * 11 10 9 13 13 H 1.09001 * 109.46972 * 55.00188 * 12 11 10 14 14 C 1.50694 * 109.47207 * 295.00309 * 12 11 10 15 15 H 1.08008 * 119.99922 * 334.66001 * 14 12 11 16 16 C 1.37872 * 120.00540 * 154.65559 * 14 12 11 17 17 N 1.31511 * 120.00654 * 184.84152 * 16 14 12 18 18 Si 1.86802 * 119.99643 * 4.84773 * 16 14 12 19 19 H 1.48504 * 109.47012 * 84.62518 * 18 16 14 20 20 H 1.48501 * 109.47046 * 204.62333 * 18 16 14 21 21 H 1.48500 * 109.47424 * 324.62416 * 18 16 14 22 22 C 1.50697 * 109.47392 * 174.99991 * 12 11 10 23 23 C 1.38238 * 119.99663 * 55.29250 * 22 12 11 24 24 C 1.38242 * 119.99427 * 179.81119 * 23 22 12 25 25 C 1.38228 * 120.00301 * 0.39935 * 24 23 22 26 26 C 1.38233 * 120.00227 * 359.85114 * 25 24 23 27 27 C 1.38234 * 119.99778 * 359.96087 * 26 25 24 28 28 N 1.31126 * 106.89926 * 0.22307 * 10 9 8 29 29 H 1.09000 * 109.47574 * 299.99860 * 1 2 3 30 30 H 1.09001 * 109.47535 * 60.00015 * 1 2 3 31 31 H 1.09002 * 109.47486 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47161 * 240.00400 * 2 1 3 33 33 H 1.09001 * 109.47535 * 119.99985 * 2 1 3 34 34 H 1.08999 * 109.46429 * 59.99889 * 5 3 2 35 35 H 1.08993 * 109.46929 * 179.97438 * 5 3 2 36 36 H 1.08993 * 109.46974 * 299.99914 * 5 3 2 37 37 H 1.09004 * 109.47089 * 65.00015 * 6 3 2 38 38 H 1.08995 * 109.46893 * 305.00213 * 6 3 2 39 39 H 1.08999 * 109.47369 * 150.01964 * 11 10 9 40 40 H 1.09004 * 109.47095 * 30.01938 * 11 10 9 41 41 H 0.97001 * 120.00577 * 180.02562 * 17 16 14 42 42 H 1.07994 * 120.00038 * 359.97438 * 23 22 12 43 43 H 1.08001 * 119.99117 * 180.22781 * 24 23 22 44 44 H 1.08002 * 119.99904 * 179.83506 * 25 24 23 45 45 H 1.07995 * 120.00342 * 179.97438 * 26 25 24 46 46 H 1.08002 * 120.00351 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 1.6351 2.1266 -1.3074 6 6 3.5647 1.4444 0.1257 7 6 4.0569 2.8634 0.2491 8 7 4.2218 3.5268 1.3543 9 8 4.6306 4.6438 1.1165 10 6 4.7689 4.8041 -0.2031 11 6 5.2497 6.0446 -0.9109 12 6 4.0543 6.9430 -1.2343 13 1 3.4990 7.1521 -0.3199 14 6 3.1536 6.2451 -2.2205 15 1 3.5575 5.4935 -2.8827 16 6 1.8139 6.5659 -2.2775 17 7 1.0094 5.8917 -3.0698 18 14 1.1416 7.9584 -1.2294 19 1 1.3431 9.2500 -1.9340 20 1 -0.3088 7.7443 -0.9932 21 1 1.8560 7.9878 0.0721 22 6 4.5452 8.2370 -1.8307 23 6 5.3605 8.2181 -2.9469 24 6 5.8076 9.4053 -3.4963 25 6 5.4461 10.6108 -2.9248 26 6 4.6350 10.6295 -1.8056 27 6 4.1847 9.4426 -1.2585 28 7 4.4011 3.6776 -0.7645 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 1.8932 -0.5137 -0.8900 33 1 1.8933 -0.5138 0.8900 34 1 0.5488 2.1252 -1.3969 35 1 1.9981 3.1543 -1.3072 36 1 2.0697 1.5876 -2.1492 37 1 4.0029 0.9837 -0.7598 38 1 3.8570 0.8801 1.0112 39 1 5.7533 5.7631 -1.8357 40 1 5.9456 6.5833 -0.2677 41 1 0.0669 6.1176 -3.1101 42 1 5.6461 7.2761 -3.3911 43 1 6.4417 9.3906 -4.3705 44 1 5.7976 11.5381 -3.3525 45 1 4.3528 11.5714 -1.3588 46 1 3.5513 9.4571 -0.3838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000601399967.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:04:02 Heat of formation + Delta-G solvation = 49.720688 kcal Electronic energy + Delta-G solvation = -26414.950799 eV Core-core repulsion = 22885.217270 eV Total energy + Delta-G solvation = -3529.733529 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -46.39375 -40.17390 -38.46735 -36.93411 -36.05535 -34.24573 -33.16591 -31.63198 -31.34613 -30.11412 -28.60657 -27.82889 -25.36230 -24.70570 -23.94167 -23.26270 -22.16191 -21.25492 -20.73727 -19.02888 -18.90980 -18.22951 -17.54290 -16.62407 -16.23222 -16.14003 -15.76444 -15.56114 -15.47130 -15.14307 -14.79210 -14.44752 -14.24254 -14.06286 -13.96706 -13.71823 -13.47910 -13.29863 -13.14010 -12.96932 -12.82929 -12.66348 -12.48973 -12.35126 -12.19950 -11.97557 -11.87922 -11.77569 -11.65128 -11.55321 -11.49703 -11.44162 -11.13047 -10.76711 -10.58891 -9.62381 -9.32399 -8.24944 -6.24725 0.28917 0.66650 0.72382 1.27306 1.30497 1.33832 1.44242 2.01561 2.31345 2.86373 3.03718 3.17442 3.19998 3.81096 3.88704 3.99295 4.07067 4.15517 4.28235 4.30729 4.35141 4.42046 4.48954 4.49752 4.56633 4.63993 4.67344 4.78487 4.80363 4.82507 4.85524 4.91239 5.03633 5.10611 5.11828 5.14907 5.18738 5.23930 5.30654 5.32464 5.37676 5.45929 5.55629 5.60354 5.75987 5.79871 5.98891 6.30839 6.35461 6.82139 7.33303 7.36883 8.89451 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.016414 B = 0.004231 C = 0.003743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.441107 B = 6615.737534 C = 7477.893799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.107 4.107 3 C -0.078 4.078 4 H 0.052 0.948 5 C -0.136 4.136 6 C -0.020 4.020 7 C 0.168 3.832 8 N -0.416 5.416 9 O 0.053 5.947 10 C 0.210 3.790 11 C -0.005 4.005 12 C 0.043 3.957 13 H 0.037 0.963 14 C -0.477 4.477 15 H 0.051 0.949 16 C 0.029 3.971 17 N -0.932 5.932 18 Si 0.902 3.098 19 H -0.260 1.260 20 H -0.304 1.304 21 H -0.247 1.247 22 C -0.060 4.060 23 C -0.119 4.119 24 C -0.122 4.122 25 C -0.140 4.140 26 C -0.125 4.125 27 C -0.158 4.158 28 N -0.486 5.486 29 H 0.048 0.952 30 H 0.044 0.956 31 H 0.072 0.928 32 H 0.075 0.925 33 H 0.082 0.918 34 H 0.047 0.953 35 H 0.027 0.973 36 H 0.056 0.944 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.117 0.883 41 H 0.259 0.741 42 H 0.120 0.880 43 H 0.142 0.858 44 H 0.146 0.854 45 H 0.137 0.863 46 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.818 -2.090 5.180 9.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.145 4.145 3 C -0.098 4.098 4 H 0.070 0.930 5 C -0.194 4.194 6 C -0.059 4.059 7 C -0.105 4.105 8 N -0.129 5.129 9 O -0.001 6.001 10 C -0.010 4.010 11 C -0.044 4.044 12 C 0.023 3.977 13 H 0.055 0.945 14 C -0.515 4.515 15 H 0.070 0.930 16 C -0.170 4.170 17 N -0.572 5.572 18 Si 0.729 3.271 19 H -0.185 1.185 20 H -0.231 1.231 21 H -0.171 1.171 22 C -0.060 4.060 23 C -0.137 4.137 24 C -0.140 4.140 25 C -0.158 4.158 26 C -0.143 4.143 27 C -0.177 4.177 28 N -0.219 5.219 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.093 0.907 33 H 0.101 0.899 34 H 0.066 0.934 35 H 0.046 0.954 36 H 0.075 0.925 37 H 0.122 0.878 38 H 0.129 0.871 39 H 0.129 0.871 40 H 0.136 0.864 41 H 0.068 0.932 42 H 0.138 0.862 43 H 0.160 0.840 44 H 0.163 0.837 45 H 0.155 0.845 46 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 7.406 -2.712 5.572 9.657 hybrid contribution -1.187 0.905 0.103 1.497 sum 6.219 -1.807 5.676 8.611 Atomic orbital electron populations 1.21823 0.95741 1.02283 1.01377 1.21500 0.96110 0.93446 1.03400 1.21099 0.93101 0.98264 0.97324 0.92961 1.21735 1.00432 0.99826 0.97365 1.20222 0.95776 0.84498 1.05407 1.26389 0.99348 1.01192 0.83521 1.74467 1.20302 0.93256 1.24884 1.85181 1.61100 1.26000 1.27806 1.29092 0.93862 0.97694 0.80318 1.20396 0.98258 0.86241 0.99512 1.18311 0.93174 0.90161 0.96019 0.94471 1.20930 0.92153 1.19546 1.18854 0.93046 1.25555 0.97645 0.97532 0.96250 1.70020 1.04692 1.41700 1.40792 0.86481 0.76841 0.82215 0.81542 1.18519 1.23123 1.17089 1.20298 0.94911 0.94791 0.96032 1.21069 0.98144 0.98865 0.95601 1.21425 1.00197 0.92212 1.00126 1.21346 0.99201 0.98703 0.96514 1.21321 0.98185 0.97688 0.97110 1.21187 1.02046 0.93282 1.01144 1.71993 1.17460 1.02057 1.30371 0.93303 0.93652 0.90858 0.90659 0.89910 0.93365 0.95420 0.92493 0.87839 0.87129 0.87144 0.86443 0.93232 0.86238 0.84034 0.83668 0.84506 0.87649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.67 71.98 0.70 -2.68 16 2 C -0.11 -2.31 5.40 30.59 0.17 -2.15 16 3 C -0.08 -2.31 2.38 -10.79 -0.03 -2.34 16 4 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 5 C -0.14 -5.12 8.76 71.99 0.63 -4.49 16 6 C -0.02 -0.59 5.32 29.85 0.16 -0.43 16 7 C 0.17 6.32 6.67 138.46 0.92 7.25 16 8 N -0.42 -16.13 12.16 -60.30 -0.73 -16.87 16 9 O 0.05 2.05 11.31 74.81 0.85 2.90 16 10 C 0.21 8.26 7.21 88.38 0.64 8.90 16 11 C -0.01 -0.18 4.98 29.85 0.15 -0.04 16 12 C 0.04 1.83 1.58 -12.29 -0.02 1.81 16 13 H 0.04 1.66 5.45 -2.39 -0.01 1.65 16 14 C -0.48 -24.98 8.01 25.60 0.21 -24.77 16 15 H 0.05 3.02 8.05 -2.91 -0.02 3.00 16 16 C 0.03 1.61 5.47 84.65 0.46 2.07 16 17 N -0.93 -56.87 13.96 21.44 0.30 -56.57 16 18 Si 0.90 44.02 24.77 68.60 1.70 45.72 16 19 H -0.26 -12.29 7.11 99.48 0.71 -11.59 16 20 H -0.30 -15.27 7.11 99.48 0.71 -14.56 16 21 H -0.25 -11.18 5.95 99.48 0.59 -10.59 16 22 C -0.06 -2.27 4.30 -19.87 -0.09 -2.36 16 23 C -0.12 -4.09 8.94 22.27 0.20 -3.89 16 24 C -0.12 -3.48 10.05 22.27 0.22 -3.26 16 25 C -0.14 -3.74 10.05 22.27 0.22 -3.52 16 26 C -0.13 -3.72 10.05 22.27 0.22 -3.49 16 27 C -0.16 -5.67 8.16 22.27 0.18 -5.49 16 28 N -0.49 -20.30 10.82 -303.18 -3.28 -23.58 16 29 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.04 1.12 6.57 -2.39 -0.02 1.10 16 31 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.05 1.78 6.56 -2.39 -0.02 1.77 16 35 H 0.03 1.30 6.83 -2.39 -0.02 1.28 16 36 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 37 H 0.10 2.73 8.14 -2.38 -0.02 2.71 16 38 H 0.11 2.55 8.14 -2.39 -0.02 2.53 16 39 H 0.11 3.69 7.33 -2.39 -0.02 3.68 16 40 H 0.12 3.22 8.14 -2.38 -0.02 3.20 16 41 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 42 H 0.12 4.05 7.37 -2.91 -0.02 4.03 16 43 H 0.14 3.17 8.06 -2.91 -0.02 3.15 16 44 H 0.15 2.86 8.06 -2.91 -0.02 2.84 16 45 H 0.14 3.26 8.06 -2.91 -0.02 3.23 16 46 H 0.11 3.78 6.77 -2.91 -0.02 3.76 16 Total: -1.00 -67.36 370.85 4.63 -62.73 By element: Atomic # 1 Polarization: 23.67 SS G_CDS: 0.85 Total: 24.52 kcal Atomic # 6 Polarization: -43.81 SS G_CDS: 4.95 Total: -38.86 kcal Atomic # 7 Polarization: -93.30 SS G_CDS: -3.71 Total: -97.01 kcal Atomic # 8 Polarization: 2.05 SS G_CDS: 0.85 Total: 2.90 kcal Atomic # 14 Polarization: 44.02 SS G_CDS: 1.70 Total: 45.72 kcal Total: -67.36 4.63 -62.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000601399967.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.453 kcal (2) G-P(sol) polarization free energy of solvation -67.361 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.733 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds