Wall clock time and date at job start Tue Mar 31 2020 11:58:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 C 1.52998 * 109.47149 * 180.02562 * 3 2 1 5 5 S 1.81405 * 109.47189 * 180.02562 * 4 3 2 6 6 C 1.81396 * 103.00203 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47360 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47074 * 120.88261 * 359.72571 * 10 8 7 12 12 C 1.53695 * 108.27576 * 128.74910 * 11 10 8 13 13 N 1.46904 * 109.25420 * 54.08473 * 12 11 10 14 14 C 1.46897 * 110.99901 * 172.60509 * 13 12 11 15 15 C 1.50703 * 109.47428 * 294.29982 * 14 13 12 16 16 H 1.08006 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00179 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00343 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47103 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.47379 * 210.00314 * 19 17 15 22 22 H 1.48497 * 109.46980 * 330.00281 * 19 17 15 23 23 C 1.46897 * 111.26792 * 296.75440 * 13 12 11 24 24 C 1.47075 * 120.87669 * 180.02562 * 10 8 7 25 25 H 1.09004 * 109.47062 * 59.99798 * 1 2 3 26 26 H 1.08998 * 109.46773 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46795 * 300.00190 * 1 2 3 28 28 H 1.09001 * 109.47046 * 240.00552 * 2 1 3 29 29 H 1.08992 * 109.47704 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.46996 * 59.99879 * 3 2 1 31 31 H 1.09004 * 109.47303 * 300.00054 * 3 2 1 32 32 H 1.09001 * 109.47046 * 60.00552 * 4 3 2 33 33 H 1.08992 * 109.47704 * 300.00244 * 4 3 2 34 34 H 1.09002 * 109.47134 * 59.99960 * 6 5 4 35 35 H 1.08998 * 109.46953 * 300.00697 * 6 5 4 36 36 H 1.09002 * 109.47153 * 59.99820 * 7 6 5 37 37 H 1.09001 * 109.46832 * 300.00011 * 7 6 5 38 38 H 1.08994 * 109.63016 * 248.52290 * 11 10 8 39 39 H 1.09001 * 109.62513 * 9.10199 * 11 10 8 40 40 H 1.08997 * 109.65385 * 294.08176 * 12 11 10 41 41 H 1.08999 * 109.42153 * 173.94686 * 12 11 10 42 42 H 1.08994 * 109.47420 * 54.30050 * 14 13 12 43 43 H 1.08997 * 109.47407 * 174.29955 * 14 13 12 44 44 H 0.96998 * 120.00461 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.49120 * 303.14081 * 23 13 12 46 46 H 1.09003 * 109.48945 * 183.06528 * 23 13 12 47 47 H 1.09003 * 109.63301 * 350.89825 * 24 10 8 48 48 H 1.09003 * 109.62726 * 111.48107 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 16 4.1747 3.1528 0.0001 6 6 5.9771 2.9484 -0.0016 7 6 6.6464 4.3242 -0.0004 8 6 8.1439 4.1544 -0.0012 9 8 8.6280 3.0424 -0.0030 10 7 8.9450 5.2382 -0.0010 11 6 8.3786 6.5956 -0.0060 12 6 9.0322 7.3947 1.1326 13 7 10.4932 7.3313 0.9924 14 6 11.1535 8.2235 1.9546 15 6 10.8162 9.6550 1.6258 16 1 10.1750 9.8796 0.7861 17 6 11.3253 10.6780 2.3973 18 7 12.1057 10.4046 3.4200 19 14 10.9066 12.4524 1.9901 20 1 9.6748 12.8499 2.7181 21 1 12.0299 13.3327 2.4002 22 1 10.6822 12.5850 0.5282 23 6 10.9824 5.9532 1.1307 24 6 10.4087 5.0949 -0.0022 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9338 0.9286 0.8890 34 1 6.2795 2.3976 -0.8922 35 1 6.2809 2.3962 0.8877 36 1 6.3440 4.8747 0.8904 37 1 6.3426 4.8767 -0.8896 38 1 8.5878 7.0760 -0.9617 39 1 7.3015 6.5434 0.1529 40 1 8.7403 6.9701 2.0931 41 1 8.7065 8.4336 1.0797 42 1 10.8081 7.9911 2.9619 43 1 12.2329 8.0827 1.8992 44 1 12.4641 11.1243 3.9626 45 1 10.6633 5.5486 2.0913 46 1 12.0711 5.9466 1.0765 47 1 10.6746 4.0502 0.1591 48 1 10.8090 5.4342 -0.9577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602208620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:55 Heat of formation + Delta-G solvation = -53.305265 kcal Electronic energy + Delta-G solvation = -23446.450893 eV Core-core repulsion = 20047.693776 eV Total energy + Delta-G solvation = -3398.757118 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.06692 -37.62020 -36.08191 -34.45029 -33.22254 -32.38722 -30.73915 -30.63187 -28.34187 -26.03308 -24.89576 -23.98743 -23.17580 -21.94111 -21.48123 -20.45956 -18.63287 -17.38283 -16.42369 -16.25732 -16.15763 -15.89379 -15.81344 -14.82583 -14.58111 -14.52528 -14.40536 -14.04990 -13.98901 -13.77183 -13.61259 -13.23651 -12.80633 -12.77614 -12.58187 -12.21245 -12.01043 -11.92252 -11.67170 -11.58749 -11.32706 -11.17843 -11.09147 -11.05897 -10.99015 -10.77840 -10.65440 -10.56471 -10.23125 -9.93000 -9.70255 -9.30601 -8.55308 -8.46877 -7.94480 -7.36695 -6.08673 -4.11009 1.30782 2.29794 2.63473 3.11409 3.27760 3.34669 3.38185 4.33099 4.36568 4.42029 4.51138 4.57747 4.64629 4.70017 4.77370 4.78904 5.07359 5.15010 5.19338 5.26366 5.31686 5.32362 5.34217 5.37200 5.45581 5.49261 5.49952 5.61675 5.64436 5.66658 5.73417 5.76426 5.83911 5.86517 5.99471 6.24630 6.40912 6.43170 6.63016 7.18512 7.24592 7.48500 7.71246 7.98066 8.08615 8.17851 8.44040 8.96082 9.53762 11.02068 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.002051 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.234567 B =13645.800385 C =14531.542837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.104 4.104 4 C -0.084 4.084 5 S -0.268 6.268 6 C -0.065 4.065 7 C -0.124 4.124 8 C 0.519 3.481 9 O -0.553 6.553 10 N -0.606 5.606 11 C 0.107 3.893 12 C 0.050 3.950 13 N -0.535 5.535 14 C 0.193 3.807 15 C -0.511 4.511 16 H 0.064 0.936 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.898 3.102 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.041 3.959 24 C 0.118 3.882 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.063 0.937 29 H 0.063 0.937 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.026 0.974 41 H 0.098 0.902 42 H -0.009 1.009 43 H 0.032 0.968 44 H 0.262 0.738 45 H 0.026 0.974 46 H 0.081 0.919 47 H 0.087 0.913 48 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.153 -17.509 -7.506 26.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.143 4.143 4 C -0.232 4.232 5 S -0.040 6.040 6 C -0.214 4.214 7 C -0.165 4.165 8 C 0.305 3.695 9 O -0.432 6.432 10 N -0.339 5.339 11 C -0.016 4.016 12 C -0.080 4.080 13 N -0.261 5.261 14 C 0.068 3.932 15 C -0.549 4.549 16 H 0.082 0.918 17 C -0.146 4.146 18 N -0.536 5.536 19 Si 0.726 3.274 20 H -0.207 1.207 21 H -0.212 1.212 22 H -0.197 1.197 23 C -0.088 4.088 24 C -0.005 4.005 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.121 0.879 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.044 0.956 41 H 0.116 0.884 42 H 0.009 0.991 43 H 0.050 0.950 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -18.237 -16.889 -7.825 26.059 hybrid contribution 0.487 -0.228 0.792 0.957 sum -17.750 -17.117 -7.034 25.642 Atomic orbital electron populations 1.21766 0.95425 1.01768 1.02055 1.21526 0.96167 0.95979 1.02292 1.21371 0.91833 0.97558 1.03495 1.23393 0.99630 0.95139 1.05059 1.86818 1.05899 1.13061 1.98192 1.23057 0.91886 1.00057 1.06378 1.21377 0.92082 0.97415 1.05656 1.20398 0.88726 0.84230 0.76098 1.90668 1.76831 1.24550 1.51196 1.48233 1.07219 1.06362 1.72066 1.22160 0.97421 0.81151 1.00858 1.22417 0.89713 1.01002 0.94821 1.62080 1.03954 1.05464 1.54564 1.19731 0.94364 0.90963 0.88098 1.21131 1.30232 0.90218 1.13339 0.91778 1.24994 0.95140 0.99409 0.95009 1.69953 1.33188 1.32599 1.17898 0.86494 0.77888 0.84283 0.78729 1.20717 1.21247 1.19738 1.22414 1.00197 0.90329 0.95909 1.21778 0.78418 1.00610 0.99662 0.92595 0.92603 0.92568 0.91820 0.91796 0.90912 0.90946 0.90054 0.90035 0.89338 0.89334 0.87876 0.87935 0.90366 0.90050 0.95626 0.88376 0.99089 0.94996 0.92849 0.95550 0.90025 0.89427 0.90866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.75 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.10 -0.68 5.22 -26.73 -0.14 -0.82 16 4 C -0.08 -0.63 5.94 37.16 0.22 -0.41 16 5 S -0.27 -2.63 21.74 -107.50 -2.34 -4.97 16 6 C -0.07 -0.68 5.23 37.16 0.19 -0.49 16 7 C -0.12 -1.34 4.07 -27.88 -0.11 -1.45 16 8 C 0.52 7.37 7.71 -10.98 -0.08 7.28 16 9 O -0.55 -9.44 15.43 5.56 0.09 -9.36 16 10 N -0.61 -8.84 3.00 -172.16 -0.52 -9.36 16 11 C 0.11 1.46 6.53 -3.37 -0.02 1.44 16 12 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 13 N -0.54 -10.92 4.62 -235.44 -1.09 -12.00 16 14 C 0.19 4.86 4.72 -4.98 -0.02 4.83 16 15 C -0.51 -13.76 8.41 -34.44 -0.29 -14.05 16 16 H 0.06 1.68 7.13 -52.48 -0.37 1.31 16 17 C 0.06 1.55 5.46 -17.82 -0.10 1.45 16 18 N -0.90 -26.11 13.29 55.43 0.74 -25.37 16 19 Si 0.90 21.01 29.54 -169.99 -5.02 15.99 16 20 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 21 H -0.29 -6.70 7.11 56.52 0.40 -6.30 16 22 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 23 C 0.04 0.72 5.62 -3.68 -0.02 0.70 16 24 C 0.12 1.81 6.60 -3.58 -0.02 1.78 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 26 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 28 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.08 0.58 8.14 -51.92 -0.42 0.15 16 33 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.09 0.95 8.10 -51.92 -0.42 0.53 16 35 H 0.09 0.99 8.10 -51.93 -0.42 0.57 16 36 H 0.10 1.05 7.67 -51.93 -0.40 0.65 16 37 H 0.10 0.96 7.99 -51.93 -0.41 0.55 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.88 6.02 -51.93 -0.31 0.56 16 40 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.10 1.84 6.67 -51.93 -0.35 1.49 16 42 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 43 H 0.03 0.86 7.97 -51.93 -0.41 0.45 16 44 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.08 1.40 7.99 -51.93 -0.41 0.99 16 47 H 0.09 1.33 7.06 -51.93 -0.37 0.97 16 48 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 LS Contribution 392.74 15.07 5.92 5.92 Total: -1.00 -30.59 392.74 -11.37 -41.95 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -8.94 Total: -2.74 kcal Atomic # 6 Polarization: 0.15 SS G_CDS: -0.21 Total: -0.06 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.87 Total: -46.73 kcal Atomic # 8 Polarization: -9.44 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Atomic # 16 Polarization: -2.63 SS G_CDS: -2.34 Total: -4.97 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -30.59 -11.37 -41.95 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.354 kcal (2) G-P(sol) polarization free energy of solvation -30.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds