Wall clock time and date at job start Tue Mar 31 2020 11:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47149 * 2 1 4 4 C 1.52998 * 109.47149 * 180.02562 * 3 2 1 5 5 S 1.81405 * 109.47189 * 180.02562 * 4 3 2 6 6 C 1.81396 * 103.00203 * 180.02562 * 5 4 3 7 7 C 1.52997 * 109.47360 * 180.02562 * 6 5 4 8 8 C 1.50701 * 109.47212 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99781 * 0.02562 * 8 7 6 10 10 N 1.34780 * 119.99795 * 179.97438 * 8 7 6 11 11 C 1.47074 * 120.88261 * 359.72571 * 10 8 7 12 12 C 1.53695 * 108.27576 * 128.74910 * 11 10 8 13 13 N 1.46904 * 109.25420 * 54.08473 * 12 11 10 14 14 C 1.46897 * 110.99901 * 172.60509 * 13 12 11 15 15 C 1.50703 * 109.47428 * 294.29982 * 14 13 12 16 16 H 1.08006 * 119.99872 * 0.02562 * 15 14 13 17 17 C 1.37869 * 120.00179 * 179.97438 * 15 14 13 18 18 N 1.31512 * 120.00343 * 0.02562 * 17 15 14 19 19 Si 1.86806 * 120.00028 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.47103 * 90.00257 * 19 17 15 21 21 H 1.48497 * 109.47379 * 210.00314 * 19 17 15 22 22 H 1.48497 * 109.46980 * 330.00281 * 19 17 15 23 23 C 1.46897 * 111.26792 * 296.75440 * 13 12 11 24 24 C 1.47075 * 120.87669 * 180.02562 * 10 8 7 25 25 H 1.09004 * 109.47062 * 59.99798 * 1 2 3 26 26 H 1.08998 * 109.46773 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46795 * 300.00190 * 1 2 3 28 28 H 1.09001 * 109.47046 * 240.00552 * 2 1 3 29 29 H 1.08992 * 109.47704 * 120.00244 * 2 1 3 30 30 H 1.09001 * 109.46996 * 59.99879 * 3 2 1 31 31 H 1.09004 * 109.47303 * 300.00054 * 3 2 1 32 32 H 1.09001 * 109.47046 * 60.00552 * 4 3 2 33 33 H 1.08992 * 109.47704 * 300.00244 * 4 3 2 34 34 H 1.09002 * 109.47134 * 59.99960 * 6 5 4 35 35 H 1.08998 * 109.46953 * 300.00697 * 6 5 4 36 36 H 1.09002 * 109.47153 * 59.99820 * 7 6 5 37 37 H 1.09001 * 109.46832 * 300.00011 * 7 6 5 38 38 H 1.08994 * 109.63016 * 248.52290 * 11 10 8 39 39 H 1.09001 * 109.62513 * 9.10199 * 11 10 8 40 40 H 1.08997 * 109.65385 * 294.08176 * 12 11 10 41 41 H 1.08999 * 109.42153 * 173.94686 * 12 11 10 42 42 H 1.08994 * 109.47420 * 54.30050 * 14 13 12 43 43 H 1.08997 * 109.47407 * 174.29955 * 14 13 12 44 44 H 0.96998 * 120.00461 * 179.97438 * 18 17 15 45 45 H 1.09001 * 109.49120 * 303.14081 * 23 13 12 46 46 H 1.09003 * 109.48945 * 183.06528 * 23 13 12 47 47 H 1.09003 * 109.63301 * 350.89825 * 24 10 8 48 48 H 1.09003 * 109.62726 * 111.48107 * 24 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 16 4.1747 3.1528 0.0001 6 6 5.9771 2.9484 -0.0016 7 6 6.6464 4.3242 -0.0004 8 6 8.1439 4.1544 -0.0012 9 8 8.6280 3.0424 -0.0030 10 7 8.9450 5.2382 -0.0010 11 6 8.3786 6.5956 -0.0060 12 6 9.0322 7.3947 1.1326 13 7 10.4932 7.3313 0.9924 14 6 11.1535 8.2235 1.9546 15 6 10.8162 9.6550 1.6258 16 1 10.1750 9.8796 0.7861 17 6 11.3253 10.6780 2.3973 18 7 12.1057 10.4046 3.4200 19 14 10.9066 12.4524 1.9901 20 1 9.6748 12.8499 2.7181 21 1 12.0299 13.3327 2.4002 22 1 10.6822 12.5850 0.5282 23 6 10.9824 5.9532 1.1307 24 6 10.4087 5.0949 -0.0022 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9329 0.9289 -0.8909 33 1 3.9338 0.9286 0.8890 34 1 6.2795 2.3976 -0.8922 35 1 6.2809 2.3962 0.8877 36 1 6.3440 4.8747 0.8904 37 1 6.3426 4.8767 -0.8896 38 1 8.5878 7.0760 -0.9617 39 1 7.3015 6.5434 0.1529 40 1 8.7403 6.9701 2.0931 41 1 8.7065 8.4336 1.0797 42 1 10.8081 7.9911 2.9619 43 1 12.2329 8.0827 1.8992 44 1 12.4641 11.1243 3.9626 45 1 10.6633 5.5486 2.0913 46 1 12.0711 5.9466 1.0765 47 1 10.6746 4.0502 0.1591 48 1 10.8090 5.4342 -0.9577 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602208620.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:54 Heat of formation + Delta-G solvation = -70.550648 kcal Electronic energy + Delta-G solvation = -23447.198709 eV Core-core repulsion = 20047.693776 eV Total energy + Delta-G solvation = -3399.504934 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.27169 -39.04970 -36.56180 -35.99275 -34.51022 -34.00957 -32.03361 -31.13059 -30.03432 -27.57002 -25.95027 -24.78699 -24.49120 -23.57491 -22.08262 -21.76448 -19.83507 -18.50353 -18.47789 -17.09336 -17.00469 -16.95516 -16.63721 -16.59813 -16.01590 -15.63560 -15.36553 -15.30467 -15.15337 -14.87781 -14.48259 -14.20469 -14.00863 -13.95913 -13.67241 -13.35749 -13.21748 -13.01378 -12.75424 -12.62107 -12.58447 -12.39304 -12.34452 -12.27584 -12.13603 -12.12620 -11.77515 -11.71276 -11.50994 -11.28126 -10.96532 -10.87082 -10.61669 -9.79845 -9.06949 -8.70211 -8.19861 -6.30360 0.56704 1.44014 1.45290 1.52130 1.56701 1.57402 1.98416 2.41543 3.12697 3.22370 3.51241 3.66910 3.83012 3.87983 3.90454 3.98333 4.03954 4.19328 4.22366 4.27768 4.33192 4.40767 4.43359 4.56688 4.59026 4.65139 4.66766 4.72124 4.81914 4.84847 4.85082 4.92054 4.94164 5.01683 5.04890 5.19211 5.22531 5.24550 5.32688 5.42360 5.44625 5.64204 6.02286 6.21580 6.39303 6.55463 6.85655 7.04484 7.39867 8.91418 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022462 B = 0.002051 C = 0.001926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.234567 B =13645.800385 C =14531.542837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.118 4.118 3 C -0.099 4.099 4 C -0.079 4.079 5 S -0.284 6.284 6 C -0.059 4.059 7 C -0.117 4.117 8 C 0.519 3.481 9 O -0.584 6.584 10 N -0.611 5.611 11 C 0.119 3.881 12 C 0.048 3.952 13 N -0.538 5.538 14 C 0.207 3.793 15 C -0.521 4.521 16 H 0.071 0.929 17 C 0.000 4.000 18 N -0.936 5.936 19 Si 0.971 3.029 20 H -0.272 1.272 21 H -0.286 1.286 22 H -0.261 1.261 23 C 0.043 3.957 24 C 0.127 3.873 25 H 0.055 0.945 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.067 0.933 29 H 0.065 0.935 30 H 0.067 0.933 31 H 0.070 0.930 32 H 0.087 0.913 33 H 0.084 0.916 34 H 0.084 0.916 35 H 0.077 0.923 36 H 0.114 0.886 37 H 0.124 0.876 38 H 0.089 0.911 39 H 0.118 0.882 40 H 0.015 0.985 41 H 0.088 0.912 42 H -0.041 1.041 43 H 0.004 0.996 44 H 0.263 0.737 45 H 0.014 0.986 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.258 -17.407 -9.053 28.202 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.157 4.157 3 C -0.138 4.138 4 C -0.227 4.227 5 S -0.056 6.056 6 C -0.208 4.208 7 C -0.157 4.157 8 C 0.307 3.693 9 O -0.465 6.465 10 N -0.343 5.343 11 C -0.003 4.003 12 C -0.081 4.081 13 N -0.263 5.263 14 C 0.081 3.919 15 C -0.560 4.560 16 H 0.089 0.911 17 C -0.198 4.198 18 N -0.577 5.577 19 Si 0.796 3.204 20 H -0.198 1.198 21 H -0.212 1.212 22 H -0.185 1.185 23 C -0.086 4.086 24 C 0.004 3.996 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.089 0.911 32 H 0.106 0.894 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.096 0.904 36 H 0.132 0.868 37 H 0.142 0.858 38 H 0.107 0.893 39 H 0.136 0.864 40 H 0.033 0.967 41 H 0.106 0.894 42 H -0.024 1.024 43 H 0.022 0.978 44 H 0.072 0.928 45 H 0.032 0.968 46 H 0.099 0.901 47 H 0.107 0.893 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -20.368 -16.799 -9.390 28.022 hybrid contribution 1.130 -0.353 1.302 1.760 sum -19.237 -17.152 -8.089 27.012 Atomic orbital electron populations 1.21771 0.95067 1.02181 1.02036 1.21510 0.96446 0.95120 1.02620 1.21346 0.91019 0.98301 1.03154 1.23475 1.00188 0.93461 1.05554 1.86842 1.05256 1.15285 1.98212 1.22938 0.92406 0.99747 1.05686 1.21392 0.89205 0.98008 1.07133 1.20964 0.90019 0.83417 0.74866 1.90658 1.77664 1.25719 1.52466 1.48319 1.06885 1.06996 1.72105 1.22156 0.98924 0.79909 0.99354 1.22481 0.88042 1.01284 0.96319 1.62014 1.05562 1.06200 1.52522 1.19383 0.93044 0.91874 0.87585 1.21462 1.30055 0.91057 1.13382 0.91104 1.25939 0.94885 1.04183 0.94743 1.70095 1.34440 1.34050 1.19103 0.85355 0.77687 0.78399 0.79009 1.19795 1.21230 1.18546 1.22442 1.00412 0.89204 0.96543 1.21615 0.79281 0.99936 0.98774 0.92547 0.91995 0.92683 0.91392 0.91581 0.91378 0.91148 0.89400 0.89719 0.89730 0.90379 0.86779 0.85778 0.89279 0.86367 0.96661 0.89421 1.02352 0.97765 0.92777 0.96788 0.90138 0.89261 0.89867 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.91 71.98 0.71 -0.57 16 2 C -0.12 -1.07 5.93 30.59 0.18 -0.89 16 3 C -0.10 -1.14 5.22 30.59 0.16 -0.98 16 4 C -0.08 -1.06 5.94 71.98 0.43 -0.64 16 5 S -0.28 -5.07 21.74 -56.49 -1.23 -6.30 16 6 C -0.06 -1.14 5.23 71.98 0.38 -0.76 16 7 C -0.12 -2.21 4.07 29.85 0.12 -2.09 16 8 C 0.52 13.77 7.71 87.66 0.68 14.45 16 9 O -0.58 -19.32 15.43 -3.03 -0.05 -19.37 16 10 N -0.61 -16.69 3.00 -816.99 -2.45 -19.15 16 11 C 0.12 2.94 6.53 86.50 0.57 3.51 16 12 C 0.05 1.65 5.47 86.54 0.47 2.13 16 13 N -0.54 -22.15 4.62 -898.81 -4.15 -26.30 16 14 C 0.21 10.81 4.72 85.56 0.40 11.21 16 15 C -0.52 -28.38 8.41 25.60 0.22 -28.16 16 16 H 0.07 3.68 7.13 -2.91 -0.02 3.66 16 17 C 0.00 0.02 5.46 84.65 0.46 0.49 16 18 N -0.94 -55.67 13.29 21.44 0.28 -55.39 16 19 Si 0.97 42.92 29.54 68.60 2.03 44.95 16 20 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 21 H -0.29 -12.58 7.11 99.48 0.71 -11.87 16 22 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 23 C 0.04 1.54 5.62 86.40 0.49 2.03 16 24 C 0.13 3.77 6.60 86.36 0.57 4.34 16 25 H 0.06 0.46 8.14 -2.38 -0.02 0.45 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.10 8.14 -2.39 -0.02 1.09 16 34 H 0.08 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.08 1.66 8.10 -2.39 -0.02 1.64 16 36 H 0.11 1.97 7.67 -2.39 -0.02 1.95 16 37 H 0.12 1.87 7.99 -2.39 -0.02 1.85 16 38 H 0.09 2.09 8.14 -2.39 -0.02 2.08 16 39 H 0.12 2.09 6.02 -2.39 -0.01 2.08 16 40 H 0.02 0.56 8.14 -2.39 -0.02 0.54 16 41 H 0.09 3.23 6.67 -2.39 -0.02 3.21 16 42 H -0.04 -2.37 8.12 -2.39 -0.02 -2.39 16 43 H 0.00 0.24 7.97 -2.39 -0.02 0.22 16 44 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 45 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 46 H 0.08 2.85 7.99 -2.39 -0.02 2.83 16 47 H 0.09 2.66 7.06 -2.39 -0.02 2.64 16 48 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 Total: -1.00 -66.66 392.74 1.16 -65.50 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: 0.90 Total: 12.01 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 5.83 Total: 4.06 kcal Atomic # 7 Polarization: -94.52 SS G_CDS: -6.32 Total: -100.84 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: -0.05 Total: -19.37 kcal Atomic # 14 Polarization: 42.92 SS G_CDS: 2.03 Total: 44.95 kcal Atomic # 16 Polarization: -5.07 SS G_CDS: -1.23 Total: -6.30 kcal Total: -66.66 1.16 -65.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602208620.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.052 kcal (2) G-P(sol) polarization free energy of solvation -66.657 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.159 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds