Wall clock time and date at job start Tue Mar 31 2020 11:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 C 1.53000 * 109.47326 * 179.97438 * 3 2 1 5 5 S 1.81403 * 109.47168 * 179.97438 * 4 3 2 6 6 C 1.81399 * 102.99945 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46692 * 304.99874 * 6 5 4 8 8 C 1.52997 * 109.47147 * 65.00130 * 6 5 4 9 9 C 1.50697 * 109.47031 * 185.00511 * 6 5 4 10 10 O 1.21283 * 119.99853 * 339.99905 * 9 6 5 11 11 N 1.34780 * 120.00232 * 159.99988 * 9 6 5 12 12 C 1.47076 * 120.87609 * 359.72021 * 11 9 6 13 13 C 1.53697 * 108.27472 * 128.75318 * 12 11 9 14 14 N 1.46905 * 109.25704 * 54.08270 * 13 12 11 15 15 C 1.46896 * 111.00314 * 172.60603 * 14 13 12 16 16 C 1.50703 * 109.47228 * 294.30096 * 15 14 13 17 17 H 1.08005 * 119.99901 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00384 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99504 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00122 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47033 * 90.00419 * 20 18 16 22 22 H 1.48503 * 109.46778 * 210.00244 * 20 18 16 23 23 H 1.48502 * 109.46895 * 329.99981 * 20 18 16 24 24 C 1.46898 * 111.26718 * 296.75716 * 14 13 12 25 25 C 1.47076 * 120.88178 * 179.97438 * 11 9 6 26 26 H 1.09002 * 109.46646 * 60.00419 * 1 2 3 27 27 H 1.09004 * 109.46753 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47382 * 300.00128 * 1 2 3 29 29 H 1.08993 * 109.47382 * 239.99872 * 2 1 3 30 30 H 1.09004 * 109.47101 * 120.00186 * 2 1 3 31 31 H 1.09009 * 109.46738 * 59.99541 * 3 2 1 32 32 H 1.08995 * 109.47078 * 300.00279 * 3 2 1 33 33 H 1.09005 * 109.46650 * 60.00398 * 4 3 2 34 34 H 1.08991 * 109.47243 * 300.00386 * 4 3 2 35 35 H 1.09002 * 109.47153 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.46832 * 60.00079 * 8 6 5 37 37 H 1.09004 * 109.47261 * 300.00060 * 8 6 5 38 38 H 1.08997 * 109.62757 * 248.52130 * 12 11 9 39 39 H 1.08999 * 109.63255 * 9.10473 * 12 11 9 40 40 H 1.08997 * 109.65273 * 294.07657 * 13 12 11 41 41 H 1.09003 * 109.42055 * 173.93840 * 13 12 11 42 42 H 1.08994 * 109.47008 * 54.29763 * 15 14 13 43 43 H 1.08998 * 109.47054 * 174.30120 * 15 14 13 44 44 H 0.97006 * 119.99993 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.49105 * 303.14351 * 24 14 13 46 46 H 1.09000 * 109.49668 * 183.06566 * 24 14 13 47 47 H 1.09007 * 109.62987 * 350.89907 * 25 11 9 48 48 H 1.09000 * 109.62988 * 111.47911 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1747 3.1528 -0.0001 6 6 5.9771 2.9484 0.0000 7 1 6.2716 2.3221 0.8421 8 6 6.4152 2.2846 -1.3071 9 6 6.6357 4.2982 0.1233 10 8 6.0166 5.3028 -0.1564 11 7 7.9128 4.3889 0.5445 12 6 8.6796 3.1837 0.8947 13 6 10.0155 3.2250 0.1358 14 7 10.6945 4.4966 0.4189 15 6 12.0512 4.5058 -0.1441 16 6 12.8950 3.4755 0.5614 17 1 12.4662 2.8743 1.3496 18 6 14.2141 3.3003 0.2007 19 7 14.7362 4.0327 -0.7587 20 14 15.2601 2.0237 1.0758 21 1 15.1521 0.7241 0.3655 22 1 16.6774 2.4668 1.0845 23 1 14.7822 1.8657 2.4729 24 6 9.9128 5.6390 -0.0725 25 6 8.5747 5.6962 0.6714 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8907 35 1 7.4983 2.1622 -1.3072 36 1 6.1206 2.9109 -2.1491 37 1 5.9388 1.3082 -1.3963 38 1 8.8654 3.1671 1.9686 39 1 8.1189 2.2955 0.6035 40 1 9.8314 3.1417 -0.9353 41 1 10.6439 2.3966 0.4628 42 1 12.0049 4.2710 -1.2075 43 1 12.4941 5.4925 -0.0088 44 1 15.6645 3.9098 -1.0122 45 1 9.7300 5.5221 -1.1407 46 1 10.4665 6.5613 0.1032 47 1 7.9446 6.4699 0.2326 48 1 8.7507 5.9169 1.7243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602210772.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:45 Heat of formation + Delta-G solvation = -44.155809 kcal Electronic energy + Delta-G solvation = -24197.871877 eV Core-core repulsion = 20799.511509 eV Total energy + Delta-G solvation = -3398.360368 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.13679 -37.57621 -36.02940 -34.59067 -33.48680 -32.35382 -30.74158 -30.45456 -28.31369 -25.87698 -24.47058 -24.36845 -23.31086 -22.06488 -21.53117 -20.67032 -18.68047 -17.40226 -16.72591 -16.41087 -16.07168 -15.51367 -15.30538 -14.91488 -14.68637 -14.47952 -14.33911 -14.00021 -13.85412 -13.64367 -13.59032 -13.37217 -13.04450 -12.48066 -12.35164 -12.26013 -12.09399 -11.92574 -11.80532 -11.63662 -11.36007 -11.14589 -11.05855 -11.00704 -10.99824 -10.79422 -10.68022 -10.58895 -9.98803 -9.94944 -9.69901 -9.32714 -8.57654 -8.49128 -7.80422 -7.39069 -6.10681 -4.13043 1.26485 2.32316 2.62201 3.06196 3.25537 3.32719 3.36077 4.30287 4.34514 4.40216 4.47532 4.63000 4.67713 4.69600 4.80187 4.83729 5.11064 5.17865 5.18892 5.25152 5.29608 5.32579 5.37064 5.39517 5.41464 5.47881 5.54972 5.57813 5.69608 5.71727 5.79104 5.81826 5.86010 5.92080 5.98257 6.23065 6.38119 6.38638 6.59725 7.16276 7.22236 7.42880 7.68945 7.95858 8.06343 8.14509 8.41740 8.93937 9.51640 11.00019 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.002478 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.525319 B =11296.191730 C =12219.033432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.120 4.120 3 C -0.103 4.103 4 C -0.104 4.104 5 S -0.191 6.191 6 C -0.091 4.091 7 H 0.108 0.892 8 C -0.145 4.145 9 C 0.535 3.465 10 O -0.530 6.530 11 N -0.602 5.602 12 C 0.105 3.895 13 C 0.051 3.949 14 N -0.535 5.535 15 C 0.193 3.807 16 C -0.511 4.511 17 H 0.064 0.936 18 C 0.056 3.944 19 N -0.897 5.897 20 Si 0.898 3.102 21 H -0.281 1.281 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.041 3.959 25 C 0.119 3.881 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.055 0.945 29 H 0.063 0.937 30 H 0.063 0.937 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.068 0.932 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.026 0.974 41 H 0.098 0.902 42 H -0.009 1.009 43 H 0.032 0.968 44 H 0.262 0.738 45 H 0.027 0.973 46 H 0.083 0.917 47 H 0.089 0.911 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.629 -7.443 1.349 23.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.159 4.159 3 C -0.141 4.141 4 C -0.253 4.253 5 S 0.037 5.963 6 C -0.223 4.223 7 H 0.126 0.874 8 C -0.204 4.204 9 C 0.320 3.680 10 O -0.407 6.407 11 N -0.336 5.336 12 C -0.018 4.018 13 C -0.078 4.078 14 N -0.260 5.260 15 C 0.069 3.931 16 C -0.549 4.549 17 H 0.082 0.918 18 C -0.146 4.146 19 N -0.536 5.536 20 Si 0.726 3.274 21 H -0.207 1.207 22 H -0.212 1.212 23 H -0.197 1.197 24 C -0.088 4.088 25 C -0.003 4.003 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.082 0.918 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.100 0.900 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.094 0.906 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.098 0.902 40 H 0.044 0.956 41 H 0.116 0.884 42 H 0.009 0.991 43 H 0.051 0.949 44 H 0.072 0.928 45 H 0.045 0.955 46 H 0.101 0.899 47 H 0.107 0.893 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -23.301 -5.852 1.615 24.079 hybrid contribution 1.606 -1.968 -0.451 2.580 sum -21.695 -7.820 1.165 23.091 Atomic orbital electron populations 1.21767 0.95493 1.01724 1.02043 1.21524 0.96106 0.95999 1.02260 1.21326 0.91804 0.97497 1.03496 1.23564 0.99842 0.96966 1.04923 1.87373 1.01336 1.09685 1.97917 1.23329 0.96265 0.99293 1.03427 0.87425 1.22049 1.02663 1.00695 0.94955 1.19591 0.81656 0.89491 0.77248 1.90708 1.63005 1.37230 1.49711 1.48125 1.11390 1.08910 1.65137 1.22212 0.92604 0.86102 1.00917 1.22409 0.93252 0.95411 0.96768 1.62077 1.04124 1.00110 1.59714 1.19734 0.82197 0.98183 0.93031 1.21122 0.95208 1.19499 1.19084 0.91816 1.25001 0.97931 0.96431 0.95236 1.69955 1.14245 1.39924 1.29447 0.86494 0.79529 0.81327 0.80041 1.20739 1.21229 1.19743 1.22406 0.93519 0.96589 0.96327 1.21788 0.93030 0.84146 1.01331 0.92598 0.92630 0.92599 0.91817 0.91823 0.90980 0.90917 0.90005 0.90193 0.90677 0.90642 0.91331 0.90333 0.90243 0.95612 0.88398 0.99077 0.94944 0.92833 0.95489 0.89908 0.89287 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.91 37.16 0.37 -0.45 16 2 C -0.12 -0.69 5.93 -26.73 -0.16 -0.85 16 3 C -0.10 -0.74 5.22 -26.73 -0.14 -0.88 16 4 C -0.10 -0.84 5.64 37.16 0.21 -0.63 16 5 S -0.19 -2.30 20.40 -107.50 -2.19 -4.49 16 6 C -0.09 -1.07 2.32 -27.89 -0.06 -1.14 16 7 H 0.11 1.07 6.85 -51.93 -0.36 0.72 16 8 C -0.14 -1.48 8.81 37.16 0.33 -1.15 16 9 C 0.53 8.13 6.88 -10.99 -0.08 8.05 16 10 O -0.53 -9.80 15.50 5.55 0.09 -9.72 16 11 N -0.60 -8.97 3.00 -172.21 -0.52 -9.49 16 12 C 0.10 1.42 6.04 -3.37 -0.02 1.40 16 13 C 0.05 0.88 5.47 -3.46 -0.02 0.86 16 14 N -0.54 -10.79 4.62 -235.49 -1.09 -11.88 16 15 C 0.19 4.81 4.72 -4.98 -0.02 4.79 16 16 C -0.51 -13.62 8.41 -34.44 -0.29 -13.91 16 17 H 0.06 1.66 7.13 -52.48 -0.37 1.28 16 18 C 0.06 1.52 5.46 -17.82 -0.10 1.43 16 19 N -0.90 -25.92 13.29 55.43 0.74 -25.18 16 20 Si 0.90 20.84 29.54 -169.99 -5.02 15.81 16 21 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 22 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 C 0.04 0.72 5.62 -3.72 -0.02 0.70 16 25 C 0.12 1.85 6.59 -3.62 -0.02 1.83 16 26 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 32 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.08 0.60 7.14 -51.92 -0.37 0.23 16 34 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.07 0.78 6.87 -51.93 -0.36 0.42 16 36 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.07 0.55 6.92 -51.93 -0.36 0.19 16 38 H 0.08 1.05 8.14 -51.93 -0.42 0.63 16 39 H 0.08 0.85 4.79 -51.93 -0.25 0.61 16 40 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.10 1.80 6.67 -51.93 -0.35 1.45 16 42 H -0.01 -0.23 8.12 -51.93 -0.42 -0.65 16 43 H 0.03 0.87 7.97 -51.93 -0.41 0.45 16 44 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 46 H 0.08 1.41 7.99 -51.93 -0.41 1.00 16 47 H 0.09 1.38 7.06 -51.93 -0.37 1.02 16 48 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 LS Contribution 386.36 15.07 5.82 5.82 Total: -1.00 -31.00 386.36 -10.86 -41.87 By element: Atomic # 1 Polarization: 5.88 SS G_CDS: -8.66 Total: -2.78 kcal Atomic # 6 Polarization: 0.07 SS G_CDS: -0.03 Total: 0.04 kcal Atomic # 7 Polarization: -45.69 SS G_CDS: -0.87 Total: -46.55 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.19 Total: -4.49 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -31.00 -10.86 -41.87 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210772.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.291 kcal (2) G-P(sol) polarization free energy of solvation -31.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.865 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds