Wall clock time and date at job start Tue Mar 31 2020 11:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.47239 * 2 1 4 4 C 1.53000 * 109.47326 * 179.97438 * 3 2 1 5 5 S 1.81403 * 109.47168 * 179.97438 * 4 3 2 6 6 C 1.81399 * 102.99945 * 180.02562 * 5 4 3 7 7 H 1.08998 * 109.46692 * 304.99874 * 6 5 4 8 8 C 1.52997 * 109.47147 * 65.00130 * 6 5 4 9 9 C 1.50697 * 109.47031 * 185.00511 * 6 5 4 10 10 O 1.21283 * 119.99853 * 339.99905 * 9 6 5 11 11 N 1.34780 * 120.00232 * 159.99988 * 9 6 5 12 12 C 1.47076 * 120.87609 * 359.72021 * 11 9 6 13 13 C 1.53697 * 108.27472 * 128.75318 * 12 11 9 14 14 N 1.46905 * 109.25704 * 54.08270 * 13 12 11 15 15 C 1.46896 * 111.00314 * 172.60603 * 14 13 12 16 16 C 1.50703 * 109.47228 * 294.30096 * 15 14 13 17 17 H 1.08005 * 119.99901 * 359.97438 * 16 15 14 18 18 C 1.37877 * 120.00384 * 179.97438 * 16 15 14 19 19 N 1.31510 * 119.99504 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00122 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47033 * 90.00419 * 20 18 16 22 22 H 1.48503 * 109.46778 * 210.00244 * 20 18 16 23 23 H 1.48502 * 109.46895 * 329.99981 * 20 18 16 24 24 C 1.46898 * 111.26718 * 296.75716 * 14 13 12 25 25 C 1.47076 * 120.88178 * 179.97438 * 11 9 6 26 26 H 1.09002 * 109.46646 * 60.00419 * 1 2 3 27 27 H 1.09004 * 109.46753 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47382 * 300.00128 * 1 2 3 29 29 H 1.08993 * 109.47382 * 239.99872 * 2 1 3 30 30 H 1.09004 * 109.47101 * 120.00186 * 2 1 3 31 31 H 1.09009 * 109.46738 * 59.99541 * 3 2 1 32 32 H 1.08995 * 109.47078 * 300.00279 * 3 2 1 33 33 H 1.09005 * 109.46650 * 60.00398 * 4 3 2 34 34 H 1.08991 * 109.47243 * 300.00386 * 4 3 2 35 35 H 1.09002 * 109.47153 * 179.97438 * 8 6 5 36 36 H 1.09001 * 109.46832 * 60.00079 * 8 6 5 37 37 H 1.09004 * 109.47261 * 300.00060 * 8 6 5 38 38 H 1.08997 * 109.62757 * 248.52130 * 12 11 9 39 39 H 1.08999 * 109.63255 * 9.10473 * 12 11 9 40 40 H 1.08997 * 109.65273 * 294.07657 * 13 12 11 41 41 H 1.09003 * 109.42055 * 173.93840 * 13 12 11 42 42 H 1.08994 * 109.47008 * 54.29763 * 15 14 13 43 43 H 1.08998 * 109.47054 * 174.30120 * 15 14 13 44 44 H 0.97006 * 119.99993 * 179.97438 * 19 18 16 45 45 H 1.08999 * 109.49105 * 303.14351 * 24 14 13 46 46 H 1.09000 * 109.49668 * 183.06566 * 24 14 13 47 47 H 1.09007 * 109.62987 * 350.89907 * 25 11 9 48 48 H 1.09000 * 109.62988 * 111.47911 * 25 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 16 4.1747 3.1528 -0.0001 6 6 5.9771 2.9484 0.0000 7 1 6.2716 2.3221 0.8421 8 6 6.4152 2.2846 -1.3071 9 6 6.6357 4.2982 0.1233 10 8 6.0166 5.3028 -0.1564 11 7 7.9128 4.3889 0.5445 12 6 8.6796 3.1837 0.8947 13 6 10.0155 3.2250 0.1358 14 7 10.6945 4.4966 0.4189 15 6 12.0512 4.5058 -0.1441 16 6 12.8950 3.4755 0.5614 17 1 12.4662 2.8743 1.3496 18 6 14.2141 3.3003 0.2007 19 7 14.7362 4.0327 -0.7587 20 14 15.2601 2.0237 1.0758 21 1 15.1521 0.7241 0.3655 22 1 16.6774 2.4668 1.0845 23 1 14.7822 1.8657 2.4729 24 6 9.9128 5.6390 -0.0725 25 6 8.5747 5.6962 0.6714 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 1.8934 -0.5138 -0.8899 30 1 1.8933 -0.5139 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6767 1.9563 -0.8899 33 1 3.9337 0.9286 -0.8892 34 1 3.9330 0.9288 0.8907 35 1 7.4983 2.1622 -1.3072 36 1 6.1206 2.9109 -2.1491 37 1 5.9388 1.3082 -1.3963 38 1 8.8654 3.1671 1.9686 39 1 8.1189 2.2955 0.6035 40 1 9.8314 3.1417 -0.9353 41 1 10.6439 2.3966 0.4628 42 1 12.0049 4.2710 -1.2075 43 1 12.4941 5.4925 -0.0088 44 1 15.6645 3.9098 -1.0122 45 1 9.7300 5.5221 -1.1407 46 1 10.4665 6.5613 0.1032 47 1 7.9446 6.4699 0.2326 48 1 8.7507 5.9169 1.7243 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602210772.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:59:44 Heat of formation + Delta-G solvation = -62.380508 kcal Electronic energy + Delta-G solvation = -24198.662159 eV Core-core repulsion = 20799.511509 eV Total energy + Delta-G solvation = -3399.150650 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.37888 -39.03172 -36.54775 -36.07502 -34.78037 -34.06065 -31.97803 -31.04167 -30.01375 -27.48364 -25.61149 -24.92506 -24.67718 -23.71701 -22.27991 -21.88628 -19.93007 -18.54898 -18.49114 -17.73164 -16.74792 -16.63026 -16.50961 -16.48034 -16.03419 -15.78950 -15.36812 -15.21897 -15.03218 -14.74004 -14.46323 -14.34280 -14.08598 -13.76639 -13.61563 -13.40045 -13.11367 -13.06102 -12.83195 -12.75459 -12.59587 -12.41734 -12.35356 -12.34137 -12.14402 -12.12341 -11.79138 -11.63923 -11.47854 -11.28768 -10.94092 -10.76425 -10.61688 -9.85134 -9.08025 -8.70728 -8.19817 -6.30211 0.40673 1.41021 1.43746 1.45416 1.56601 1.60009 1.90459 2.41320 3.12431 3.19703 3.26098 3.75563 3.84269 3.85952 3.93388 3.94952 4.01357 4.19324 4.20478 4.22316 4.36719 4.40407 4.48267 4.52136 4.57297 4.65144 4.69339 4.71695 4.80701 4.86937 4.91891 4.95278 4.96580 5.06018 5.09716 5.18559 5.21231 5.26609 5.35645 5.37705 5.47169 5.63981 6.01886 6.17689 6.32830 6.54110 6.85689 6.96051 7.39868 8.91409 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.022016 B = 0.002478 C = 0.002291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1271.525319 B =11296.191730 C =12219.033432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.115 4.115 3 C -0.101 4.101 4 C -0.086 4.086 5 S -0.253 6.253 6 C -0.079 4.079 7 H 0.133 0.867 8 C -0.140 4.140 9 C 0.530 3.470 10 O -0.567 6.567 11 N -0.605 5.605 12 C 0.116 3.884 13 C 0.050 3.950 14 N -0.538 5.538 15 C 0.208 3.792 16 C -0.520 4.520 17 H 0.071 0.929 18 C -0.001 4.001 19 N -0.936 5.936 20 Si 0.971 3.029 21 H -0.272 1.272 22 H -0.288 1.288 23 H -0.261 1.261 24 C 0.045 3.955 25 C 0.128 3.872 26 H 0.052 0.948 27 H 0.062 0.938 28 H 0.053 0.947 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.058 0.942 37 H 0.096 0.904 38 H 0.090 0.910 39 H 0.116 0.884 40 H 0.018 0.982 41 H 0.090 0.910 42 H -0.040 1.040 43 H 0.004 0.996 44 H 0.263 0.737 45 H 0.015 0.985 46 H 0.082 0.918 47 H 0.087 0.913 48 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.647 -10.233 2.686 25.906 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.154 4.154 3 C -0.140 4.140 4 C -0.234 4.234 5 S -0.025 6.025 6 C -0.211 4.211 7 H 0.151 0.849 8 C -0.199 4.199 9 C 0.318 3.682 10 O -0.447 6.447 11 N -0.337 5.337 12 C -0.007 4.007 13 C -0.079 4.079 14 N -0.263 5.263 15 C 0.081 3.919 16 C -0.558 4.558 17 H 0.089 0.911 18 C -0.199 4.199 19 N -0.577 5.577 20 Si 0.796 3.204 21 H -0.197 1.197 22 H -0.214 1.214 23 H -0.186 1.186 24 C -0.085 4.085 25 C 0.005 3.995 26 H 0.072 0.928 27 H 0.081 0.919 28 H 0.072 0.928 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.113 0.887 34 H 0.113 0.887 35 H 0.094 0.906 36 H 0.077 0.923 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.134 0.866 40 H 0.036 0.964 41 H 0.108 0.892 42 H -0.022 1.022 43 H 0.022 0.978 44 H 0.072 0.928 45 H 0.033 0.967 46 H 0.100 0.900 47 H 0.106 0.894 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -24.341 -8.658 2.964 26.005 hybrid contribution 1.850 -1.061 -0.909 2.318 sum -22.491 -9.719 2.056 24.587 Atomic orbital electron populations 1.21780 0.95347 1.02174 1.01877 1.21496 0.96209 0.94812 1.02887 1.21324 0.91375 0.98426 1.02829 1.23612 0.99929 0.93613 1.06238 1.87650 1.02429 1.14311 1.98096 1.23277 0.95420 0.97261 1.05117 0.84888 1.22049 1.02833 1.01596 0.93459 1.20211 0.81368 0.90570 0.76043 1.90691 1.63870 1.38961 1.51148 1.48208 1.11627 1.08926 1.64975 1.22232 0.90608 0.86906 1.00913 1.22463 0.94901 0.93535 0.97002 1.62007 1.02766 1.02244 1.59275 1.19384 0.84904 0.96267 0.91306 1.21446 0.95653 1.19632 1.19065 0.91077 1.25949 0.99426 0.98564 0.95918 1.70099 1.14649 1.41794 1.31120 0.85354 0.77245 0.78620 0.79222 1.19709 1.21356 1.18552 1.22411 0.94427 0.95699 0.95922 1.21631 0.91509 0.84953 1.01422 0.92838 0.91864 0.92775 0.91196 0.91129 0.91655 0.91724 0.88691 0.88700 0.90621 0.92302 0.88483 0.89221 0.86576 0.96367 0.89207 1.02230 0.97778 0.92792 0.96684 0.90008 0.89418 0.89695 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.91 71.98 0.71 -0.67 16 2 C -0.11 -1.04 5.93 30.59 0.18 -0.86 16 3 C -0.10 -1.26 5.22 30.59 0.16 -1.10 16 4 C -0.09 -1.15 5.64 71.98 0.41 -0.74 16 5 S -0.25 -5.73 20.40 -56.49 -1.15 -6.88 16 6 C -0.08 -1.67 2.32 29.85 0.07 -1.60 16 7 H 0.13 2.10 6.85 -2.39 -0.02 2.09 16 8 C -0.14 -2.51 8.81 71.98 0.63 -1.88 16 9 C 0.53 15.46 6.88 87.66 0.60 16.06 16 10 O -0.57 -20.96 15.50 -3.04 -0.05 -21.00 16 11 N -0.60 -17.10 3.00 -817.13 -2.45 -19.56 16 12 C 0.12 2.85 6.04 86.50 0.52 3.37 16 13 C 0.05 1.68 5.47 86.54 0.47 2.16 16 14 N -0.54 -21.85 4.62 -898.96 -4.15 -26.00 16 15 C 0.21 10.68 4.72 85.56 0.40 11.08 16 16 C -0.52 -27.88 8.41 25.60 0.22 -27.67 16 17 H 0.07 3.64 7.13 -2.91 -0.02 3.62 16 18 C 0.00 -0.03 5.46 84.66 0.46 0.43 16 19 N -0.94 -55.19 13.29 21.45 0.28 -54.91 16 20 Si 0.97 42.39 29.54 68.60 2.03 44.42 16 21 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 22 H -0.29 -12.54 7.11 99.48 0.71 -11.83 16 23 H -0.26 -10.86 7.11 99.48 0.71 -10.15 16 24 C 0.04 1.59 5.62 86.37 0.49 2.08 16 25 C 0.13 3.89 6.59 86.34 0.57 4.46 16 26 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.06 0.47 8.14 -2.38 -0.02 0.46 16 28 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 29 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.07 0.57 8.14 -2.38 -0.02 0.55 16 31 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.90 16 33 H 0.09 1.04 7.14 -2.39 -0.02 1.03 16 34 H 0.09 1.02 8.14 -2.39 -0.02 1.01 16 35 H 0.08 1.36 6.87 -2.39 -0.02 1.34 16 36 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 37 H 0.10 1.19 6.92 -2.38 -0.02 1.17 16 38 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 39 H 0.12 2.03 4.79 -2.39 -0.01 2.02 16 40 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 41 H 0.09 3.20 6.67 -2.39 -0.02 3.18 16 42 H -0.04 -2.27 8.12 -2.39 -0.02 -2.29 16 43 H 0.00 0.23 7.97 -2.39 -0.02 0.21 16 44 H 0.26 14.66 8.31 -92.70 -0.77 13.89 16 45 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 46 H 0.08 2.89 7.99 -2.39 -0.02 2.87 16 47 H 0.09 2.73 7.06 -2.38 -0.02 2.71 16 48 H 0.08 2.43 8.14 -2.39 -0.02 2.42 16 Total: -1.00 -68.72 386.36 1.31 -67.41 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: 0.91 Total: 11.39 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 5.90 Total: 5.12 kcal Atomic # 7 Polarization: -94.14 SS G_CDS: -6.32 Total: -100.47 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.05 Total: -21.00 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: -5.73 SS G_CDS: -1.15 Total: -6.88 kcal Total: -68.72 1.31 -67.41 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602210772.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.031 kcal (2) G-P(sol) polarization free energy of solvation -68.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds