Wall clock time and date at job start Tue Mar 31 2020 10:41:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47392 * 2 1 4 4 C 1.53006 * 109.46935 * 119.99904 * 2 1 3 5 5 C 1.53001 * 109.46995 * 174.99896 * 4 2 1 6 6 C 1.52995 * 109.46887 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.46914 * 184.95069 * 6 5 4 8 8 C 1.34781 * 119.99759 * 184.95196 * 7 6 5 9 9 O 1.21662 * 119.99837 * 4.56369 * 8 7 6 10 10 C 1.46884 * 119.99736 * 184.55782 * 8 7 6 11 11 C 1.36120 * 125.43849 * 185.55899 * 10 8 7 12 12 C 1.41701 * 107.75027 * 180.24427 * 11 10 8 13 13 C 1.40019 * 133.35022 * 179.81879 * 12 11 10 14 14 C 1.36577 * 119.83418 * 179.97438 * 13 12 11 15 15 C 1.38854 * 120.59449 * 359.97438 * 14 13 12 16 16 C 1.37840 * 120.63840 * 359.97438 * 15 14 13 17 17 C 1.39090 * 119.81288 * 0.02562 * 16 15 14 18 18 N 1.37832 * 133.16917 * 180.02562 * 17 16 15 19 19 C 1.36894 * 125.61473 * 359.93416 * 18 17 16 20 20 H 1.08004 * 119.99667 * 127.01053 * 19 18 17 21 21 C 1.39011 * 120.00347 * 307.01017 * 19 18 17 22 22 N 1.31346 * 119.99616 * 3.44530 * 21 19 18 23 23 Si 1.86798 * 120.00110 * 183.16310 * 21 19 18 24 24 H 1.48494 * 109.47571 * 275.27891 * 23 21 19 25 25 H 1.48500 * 109.47189 * 35.28172 * 23 21 19 26 26 H 1.48501 * 109.46808 * 155.27449 * 23 21 19 27 27 H 1.09001 * 109.46930 * 300.00414 * 1 2 3 28 28 H 1.08997 * 109.46932 * 60.00011 * 1 2 3 29 29 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46930 * 239.99585 * 2 1 3 31 31 H 1.09002 * 109.47417 * 299.99587 * 3 2 1 32 32 H 1.09001 * 109.47422 * 59.99887 * 3 2 1 33 33 H 1.09003 * 109.47346 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46822 * 54.99993 * 4 2 1 35 35 H 1.08992 * 109.46749 * 294.99921 * 4 2 1 36 36 H 1.08999 * 109.47455 * 59.99951 * 5 4 2 37 37 H 1.09001 * 109.46867 * 299.99826 * 5 4 2 38 38 H 1.08993 * 109.47639 * 64.94871 * 6 5 4 39 39 H 1.09001 * 109.46844 * 304.94237 * 6 5 4 40 40 H 0.97000 * 120.00311 * 4.95338 * 7 6 5 41 41 H 1.08007 * 126.12389 * 0.02562 * 11 10 8 42 42 H 1.08008 * 120.08551 * 359.94046 * 13 12 11 43 43 H 1.07995 * 119.70498 * 180.02562 * 14 13 12 44 44 H 1.08002 * 119.67930 * 180.02562 * 15 14 13 45 45 H 1.07997 * 120.09896 * 179.97438 * 16 15 14 46 46 H 0.97004 * 120.00228 * 354.16131 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 6 4.0747 -1.5529 2.4370 7 7 5.5397 -1.5540 2.4364 8 6 6.2135 -2.2233 3.3928 9 8 5.6078 -2.8943 4.2071 10 6 7.6789 -2.1427 3.4518 11 6 8.4750 -2.8526 4.2975 12 6 9.8181 -2.4819 4.0397 13 6 11.0453 -2.8709 4.5904 14 6 12.2049 -2.3231 4.1210 15 6 12.1795 -1.3823 3.1001 16 6 10.9840 -0.9842 2.5413 17 6 9.7899 -1.5280 3.0028 18 7 8.4700 -1.3372 2.6546 19 6 8.0168 -0.4848 1.6840 20 1 7.3627 -0.8508 0.9064 21 6 8.3985 0.8518 1.6993 22 7 9.2472 1.2821 2.6046 23 14 7.7104 2.0342 0.4273 24 1 8.5249 1.9572 -0.8119 25 1 6.3048 1.6671 0.1194 26 1 7.7543 3.4183 0.9634 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1369 36 1 3.9995 0.1674 1.1421 37 1 3.8531 -1.3941 0.3003 38 1 3.7106 -2.5802 2.4371 39 1 3.7121 -1.0388 3.3271 40 1 6.0249 -1.0730 1.7478 41 1 8.1422 -3.5676 5.0355 42 1 11.0747 -3.6020 5.3849 43 1 13.1503 -2.6250 4.5470 44 1 13.1055 -0.9589 2.7398 45 1 10.9743 -0.2515 1.7480 46 1 9.5423 0.6892 3.3134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609162740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:56 Heat of formation + Delta-G solvation = -10.502648 kcal Electronic energy + Delta-G solvation = -26114.576769 eV Core-core repulsion = 22582.231760 eV Total energy + Delta-G solvation = -3532.345008 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.73411 -38.68903 -37.19174 -36.11839 -34.61821 -33.71916 -31.20747 -30.58715 -29.14219 -28.17619 -27.29420 -25.87231 -24.83679 -23.01346 -21.51404 -21.03009 -20.37124 -20.00632 -19.37218 -18.36815 -16.51484 -15.83573 -15.75184 -15.50192 -15.03947 -14.75559 -14.57360 -14.31169 -14.15508 -13.72996 -13.60935 -13.35194 -13.15946 -13.08122 -12.45793 -12.36291 -12.25506 -12.16264 -11.89929 -11.78958 -11.58890 -11.18283 -11.11598 -10.94403 -10.78394 -10.63251 -10.59472 -10.52892 -10.40838 -10.34257 -9.92960 -9.44223 -9.24876 -8.82988 -8.51660 -7.62277 -7.04824 -6.67111 -4.86344 1.66905 2.55961 2.95982 3.01400 3.04652 3.19496 3.75124 3.82778 4.21347 4.38809 4.59553 4.69012 4.77073 4.81148 4.82862 5.14949 5.24011 5.44234 5.50492 5.55497 5.58774 5.64165 5.71522 5.72129 5.77955 5.79222 5.87643 5.90804 6.00684 6.05648 6.13298 6.18152 6.24102 6.34721 6.36749 6.37280 6.50750 6.70630 6.82607 6.90948 7.02197 7.22390 7.31865 7.41154 7.58320 7.70477 7.78945 8.10281 8.25656 8.62942 8.90492 9.08378 10.14023 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003982 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.408591 B = 7029.830626 C = 8594.918450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.097 4.097 3 C -0.153 4.153 4 C -0.110 4.110 5 C -0.135 4.135 6 C 0.118 3.882 7 N -0.726 5.726 8 C 0.594 3.406 9 O -0.559 6.559 10 C -0.010 4.010 11 C -0.163 4.163 12 C -0.131 4.131 13 C -0.080 4.080 14 C -0.160 4.160 15 C -0.132 4.132 16 C -0.085 4.085 17 C 0.078 3.922 18 N -0.276 5.276 19 C -0.449 4.449 20 H 0.098 0.902 21 C 0.028 3.972 22 N -0.839 5.839 23 Si 1.082 2.918 24 H -0.275 1.275 25 H -0.275 1.275 26 H -0.272 1.272 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.064 0.936 35 H 0.065 0.935 36 H 0.074 0.926 37 H 0.067 0.933 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.415 0.585 41 H 0.135 0.865 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.111 0.889 45 H 0.119 0.881 46 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.261 -0.182 -5.233 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.116 4.116 3 C -0.210 4.210 4 C -0.148 4.148 5 C -0.173 4.173 6 C -0.006 4.006 7 N -0.386 5.386 8 C 0.383 3.617 9 O -0.439 6.439 10 C -0.124 4.124 11 C -0.190 4.190 12 C -0.136 4.136 13 C -0.099 4.099 14 C -0.179 4.179 15 C -0.152 4.152 16 C -0.105 4.105 17 C -0.036 4.036 18 N 0.059 4.941 19 C -0.576 4.576 20 H 0.115 0.885 21 C -0.187 4.187 22 N -0.468 5.468 23 Si 0.905 3.095 24 H -0.201 1.201 25 H -0.201 1.201 26 H -0.197 1.197 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.082 0.918 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.078 0.922 40 H 0.260 0.740 41 H 0.153 0.847 42 H 0.126 0.874 43 H 0.126 0.874 44 H 0.129 0.871 45 H 0.137 0.863 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -8.787 1.187 -5.461 10.414 hybrid contribution 0.227 -1.286 0.304 1.341 sum -8.561 -0.100 -5.157 9.994 Atomic orbital electron populations 1.21839 0.95417 1.01546 1.01600 1.21120 0.95457 0.96571 0.98446 1.21927 1.01731 0.95804 1.01524 1.21559 0.94626 1.00642 0.97995 1.21875 0.96007 1.01598 0.97811 1.21272 0.80963 1.00491 0.97845 1.46702 1.06652 1.53585 1.31623 1.17220 0.85456 0.78440 0.80581 1.90714 1.69223 1.42366 1.41552 1.20352 0.90417 1.03200 0.98409 1.20480 0.90768 1.04951 1.02826 1.18063 0.93359 1.01330 1.00826 1.20143 0.90928 0.99562 0.99231 1.20344 0.97057 1.00588 0.99953 1.20632 0.96448 0.99665 0.98462 1.20207 0.89659 0.99839 1.00774 1.18642 0.85954 0.99282 0.99717 1.40077 1.01969 1.28245 1.23845 1.20363 1.37386 0.91690 1.08189 0.88467 1.26917 0.94187 0.96259 1.01380 1.70583 1.22827 1.41730 1.11612 0.83306 0.76267 0.75801 0.74152 1.20091 1.20061 1.19690 0.92742 0.92889 0.92810 0.91223 0.92963 0.92681 0.92042 0.91761 0.91649 0.90743 0.91394 0.91826 0.92247 0.73955 0.84675 0.87352 0.87447 0.87128 0.86278 0.89253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.16 0.34 -0.86 16 2 C -0.10 -0.92 2.92 -90.62 -0.26 -1.19 16 3 C -0.15 -1.49 8.95 37.15 0.33 -1.16 16 4 C -0.11 -1.15 4.68 -26.73 -0.13 -1.27 16 5 C -0.14 -1.72 5.09 -26.73 -0.14 -1.85 16 6 C 0.12 1.88 5.70 -4.04 -0.02 1.86 16 7 N -0.73 -14.30 5.44 -61.55 -0.33 -14.63 16 8 C 0.59 13.65 7.77 -12.76 -0.10 13.55 16 9 O -0.56 -13.59 16.83 5.22 0.09 -13.50 16 10 C -0.01 -0.23 6.77 -82.25 -0.56 -0.79 16 11 C -0.16 -3.79 10.55 -39.02 -0.41 -4.20 16 12 C -0.13 -3.02 6.16 -106.89 -0.66 -3.68 16 13 C -0.08 -1.58 10.06 -39.51 -0.40 -1.98 16 14 C -0.16 -2.96 9.97 -39.95 -0.40 -3.36 16 15 C -0.13 -2.58 10.02 -39.50 -0.40 -2.98 16 16 C -0.08 -1.94 8.25 -39.41 -0.32 -2.26 16 17 C 0.08 1.90 5.24 -83.84 -0.44 1.46 16 18 N -0.28 -6.85 2.64 -56.08 -0.15 -7.00 16 19 C -0.45 -10.73 7.75 -15.00 -0.12 -10.85 16 20 H 0.10 2.17 6.21 -52.48 -0.33 1.85 16 21 C 0.03 0.67 5.16 -17.47 -0.09 0.57 16 22 N -0.84 -21.92 12.36 55.50 0.69 -21.23 16 23 Si 1.08 20.30 29.92 -169.99 -5.09 15.22 16 24 H -0.28 -4.98 7.11 56.52 0.40 -4.58 16 25 H -0.28 -4.62 7.11 56.52 0.40 -4.22 16 26 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 27 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.67 6.56 -51.93 -0.34 0.32 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.07 1.00 6.56 -51.93 -0.34 0.65 16 37 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.06 1.00 8.10 -51.93 -0.42 0.58 16 39 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 40 H 0.41 8.20 4.33 -40.82 -0.18 8.02 16 41 H 0.14 2.89 8.06 -52.48 -0.42 2.47 16 42 H 0.11 1.83 8.06 -52.48 -0.42 1.41 16 43 H 0.11 1.63 8.06 -52.49 -0.42 1.20 16 44 H 0.11 1.85 8.06 -52.49 -0.42 1.42 16 45 H 0.12 2.81 7.18 -52.49 -0.38 2.44 16 46 H 0.29 8.05 5.51 -40.82 -0.22 7.82 16 LS Contribution 370.84 15.07 5.59 5.59 Total: -1.00 -28.32 370.84 -9.89 -38.22 By element: Atomic # 1 Polarization: 23.24 SS G_CDS: -6.92 Total: 16.32 kcal Atomic # 6 Polarization: -15.21 SS G_CDS: -3.76 Total: -18.98 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.20 Total: -42.86 kcal Atomic # 8 Polarization: -13.59 SS G_CDS: 0.09 Total: -13.50 kcal Atomic # 14 Polarization: 20.30 SS G_CDS: -5.09 Total: 15.22 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -28.32 -9.89 -38.22 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609162740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.713 kcal (2) G-P(sol) polarization free energy of solvation -28.324 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds