Wall clock time and date at job start Tue Mar 31 2020 10:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47392 * 2 1 4 4 C 1.53006 * 109.46935 * 119.99904 * 2 1 3 5 5 C 1.53001 * 109.46995 * 174.99896 * 4 2 1 6 6 C 1.52995 * 109.46887 * 180.02562 * 5 4 2 7 7 N 1.46507 * 109.46914 * 184.95069 * 6 5 4 8 8 C 1.34781 * 119.99759 * 184.95196 * 7 6 5 9 9 O 1.21662 * 119.99837 * 4.56369 * 8 7 6 10 10 C 1.46884 * 119.99736 * 184.55782 * 8 7 6 11 11 C 1.36120 * 125.43849 * 185.55899 * 10 8 7 12 12 C 1.41701 * 107.75027 * 180.24427 * 11 10 8 13 13 C 1.40019 * 133.35022 * 179.81879 * 12 11 10 14 14 C 1.36577 * 119.83418 * 179.97438 * 13 12 11 15 15 C 1.38854 * 120.59449 * 359.97438 * 14 13 12 16 16 C 1.37840 * 120.63840 * 359.97438 * 15 14 13 17 17 C 1.39090 * 119.81288 * 0.02562 * 16 15 14 18 18 N 1.37832 * 133.16917 * 180.02562 * 17 16 15 19 19 C 1.36894 * 125.61473 * 359.93416 * 18 17 16 20 20 H 1.08004 * 119.99667 * 127.01053 * 19 18 17 21 21 C 1.39011 * 120.00347 * 307.01017 * 19 18 17 22 22 N 1.31346 * 119.99616 * 3.44530 * 21 19 18 23 23 Si 1.86798 * 120.00110 * 183.16310 * 21 19 18 24 24 H 1.48494 * 109.47571 * 275.27891 * 23 21 19 25 25 H 1.48500 * 109.47189 * 35.28172 * 23 21 19 26 26 H 1.48501 * 109.46808 * 155.27449 * 23 21 19 27 27 H 1.09001 * 109.46930 * 300.00414 * 1 2 3 28 28 H 1.08997 * 109.46932 * 60.00011 * 1 2 3 29 29 H 1.08996 * 109.47045 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.46930 * 239.99585 * 2 1 3 31 31 H 1.09002 * 109.47417 * 299.99587 * 3 2 1 32 32 H 1.09001 * 109.47422 * 59.99887 * 3 2 1 33 33 H 1.09003 * 109.47346 * 179.97438 * 3 2 1 34 34 H 1.09005 * 109.46822 * 54.99993 * 4 2 1 35 35 H 1.08992 * 109.46749 * 294.99921 * 4 2 1 36 36 H 1.08999 * 109.47455 * 59.99951 * 5 4 2 37 37 H 1.09001 * 109.46867 * 299.99826 * 5 4 2 38 38 H 1.08993 * 109.47639 * 64.94871 * 6 5 4 39 39 H 1.09001 * 109.46844 * 304.94237 * 6 5 4 40 40 H 0.97000 * 120.00311 * 4.95338 * 7 6 5 41 41 H 1.08007 * 126.12389 * 0.02562 * 11 10 8 42 42 H 1.08008 * 120.08551 * 359.94046 * 13 12 11 43 43 H 1.07995 * 119.70498 * 180.02562 * 14 13 12 44 44 H 1.08002 * 119.67930 * 180.02562 * 15 14 13 45 45 H 1.07997 * 120.09896 * 179.97438 * 16 15 14 46 46 H 0.97004 * 120.00228 * 354.16131 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5648 -0.8311 1.1880 6 6 4.0747 -1.5529 2.4370 7 7 5.5397 -1.5540 2.4364 8 6 6.2135 -2.2233 3.3928 9 8 5.6078 -2.8943 4.2071 10 6 7.6789 -2.1427 3.4518 11 6 8.4750 -2.8526 4.2975 12 6 9.8181 -2.4819 4.0397 13 6 11.0453 -2.8709 4.5904 14 6 12.2049 -2.3231 4.1210 15 6 12.1795 -1.3823 3.1001 16 6 10.9840 -0.9842 2.5413 17 6 9.7899 -1.5280 3.0028 18 7 8.4700 -1.3372 2.6546 19 6 8.0168 -0.4848 1.6840 20 1 7.3627 -0.8508 0.9064 21 6 8.3985 0.8518 1.6993 22 7 9.2472 1.2821 2.6046 23 14 7.7104 2.0342 0.4273 24 1 8.5249 1.9572 -0.8119 25 1 6.3048 1.6671 0.1194 26 1 7.7543 3.4183 0.9634 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.6768 1.9563 -0.8900 32 1 1.6768 1.9563 0.8900 33 1 3.1301 1.4424 0.0005 34 1 1.6053 -1.7198 1.2952 35 1 1.7516 -0.1583 2.1369 36 1 3.9995 0.1674 1.1421 37 1 3.8531 -1.3941 0.3003 38 1 3.7106 -2.5802 2.4371 39 1 3.7121 -1.0388 3.3271 40 1 6.0249 -1.0730 1.7478 41 1 8.1422 -3.5676 5.0355 42 1 11.0747 -3.6020 5.3849 43 1 13.1503 -2.6250 4.5470 44 1 13.1055 -0.9589 2.7398 45 1 10.9743 -0.2515 1.7480 46 1 9.5423 0.6892 3.3134 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609162740.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:55 Heat of formation + Delta-G solvation = -23.688919 kcal Electronic energy + Delta-G solvation = -26115.148568 eV Core-core repulsion = 22582.231760 eV Total energy + Delta-G solvation = -3532.916808 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -42.47124 -40.36057 -38.15633 -37.78135 -36.07877 -35.44063 -32.51226 -32.24997 -30.77986 -29.83196 -27.99920 -27.09253 -26.63609 -24.49477 -22.80250 -22.69283 -21.97065 -21.24177 -20.72338 -20.07225 -18.19049 -17.51151 -17.17754 -16.90113 -16.60669 -16.26490 -15.89240 -15.68124 -15.56998 -15.04951 -14.89335 -14.75097 -14.73885 -14.31122 -14.11890 -13.82669 -13.55593 -13.38147 -13.06864 -12.80522 -12.61052 -12.57960 -12.48209 -12.16123 -12.06295 -12.04471 -11.94908 -11.66969 -11.58389 -11.44764 -11.38381 -11.14113 -10.99454 -10.55986 -10.12718 -9.43848 -8.81631 -8.43072 -6.74288 -0.04042 0.92590 1.22744 1.47706 1.54968 1.72163 2.15160 2.27850 2.43053 2.68189 2.81799 3.14254 3.74453 3.87215 3.92525 4.03905 4.07422 4.18453 4.29326 4.31142 4.39472 4.49503 4.60194 4.63530 4.68105 4.70404 4.82427 4.82813 4.87815 4.92225 5.03494 5.04631 5.09526 5.12649 5.20567 5.23099 5.24694 5.33725 5.41356 5.46513 5.51878 5.54832 5.68447 5.76765 5.79500 5.99220 6.04789 6.40950 6.53606 6.83832 7.17206 7.28339 8.23696 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015866 B = 0.003982 C = 0.003257 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1764.408591 B = 7029.830626 C = 8594.918450 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.096 4.096 3 C -0.154 4.154 4 C -0.106 4.106 5 C -0.126 4.126 6 C 0.115 3.885 7 N -0.718 5.718 8 C 0.588 3.412 9 O -0.581 6.581 10 C -0.039 4.039 11 C -0.170 4.170 12 C -0.151 4.151 13 C -0.082 4.082 14 C -0.151 4.151 15 C -0.117 4.117 16 C -0.116 4.116 17 C 0.052 3.948 18 N -0.293 5.293 19 C -0.457 4.457 20 H 0.107 0.893 21 C -0.007 4.007 22 N -0.868 5.868 23 Si 1.121 2.879 24 H -0.263 1.263 25 H -0.243 1.243 26 H -0.281 1.281 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.065 0.935 39 H 0.057 0.943 40 H 0.415 0.585 41 H 0.147 0.853 42 H 0.141 0.859 43 H 0.154 0.846 44 H 0.143 0.857 45 H 0.099 0.901 46 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.216 -0.338 -5.964 10.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.114 4.114 3 C -0.212 4.212 4 C -0.144 4.144 5 C -0.164 4.164 6 C -0.008 4.008 7 N -0.376 5.376 8 C 0.376 3.624 9 O -0.463 6.463 10 C -0.152 4.152 11 C -0.198 4.198 12 C -0.156 4.156 13 C -0.101 4.101 14 C -0.170 4.170 15 C -0.137 4.137 16 C -0.136 4.136 17 C -0.061 4.061 18 N 0.040 4.960 19 C -0.583 4.583 20 H 0.124 0.876 21 C -0.216 4.216 22 N -0.498 5.498 23 Si 0.937 3.063 24 H -0.188 1.188 25 H -0.166 1.166 26 H -0.206 1.206 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.077 0.923 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.068 0.932 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.075 0.925 40 H 0.260 0.740 41 H 0.165 0.835 42 H 0.158 0.842 43 H 0.171 0.829 44 H 0.161 0.839 45 H 0.118 0.882 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.762 1.013 -6.212 10.788 hybrid contribution 0.333 -1.314 0.587 1.477 sum -8.429 -0.301 -5.625 10.138 Atomic orbital electron populations 1.21814 0.94267 1.02033 1.02056 1.21110 0.96393 0.96148 0.97791 1.21945 1.00945 0.96208 1.02068 1.21544 0.92729 1.01372 0.98737 1.21838 0.97575 1.00772 0.96203 1.21524 0.78625 1.01139 0.99529 1.46727 1.08268 1.52200 1.30368 1.17249 0.85285 0.78794 0.81068 1.90677 1.69484 1.43615 1.42566 1.20710 0.91350 1.03853 0.99311 1.20746 0.91208 1.04995 1.02872 1.18448 0.94478 1.01596 1.01088 1.20586 0.90027 0.99866 0.99583 1.20843 0.98512 0.98959 0.98665 1.21105 0.96420 0.98642 0.97543 1.20245 0.90604 1.00885 1.01855 1.19094 0.86303 1.00169 1.00576 1.40253 1.02393 1.28854 1.24465 1.20683 1.37410 0.91973 1.08271 0.87570 1.28355 0.93299 0.97809 1.02088 1.70695 1.25086 1.41415 1.12576 0.82909 0.77694 0.73317 0.72376 1.18786 1.16618 1.20612 0.92665 0.92095 0.92332 0.91019 0.91949 0.92689 0.93240 0.90976 0.91610 0.91257 0.90773 0.91620 0.92508 0.74013 0.83534 0.84172 0.82853 0.83904 0.88237 0.91242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.05 9.19 71.98 0.66 -1.39 16 2 C -0.10 -1.62 2.92 -10.79 -0.03 -1.66 16 3 C -0.15 -2.75 8.95 71.98 0.64 -2.11 16 4 C -0.11 -2.04 4.68 30.60 0.14 -1.89 16 5 C -0.13 -3.06 5.09 30.59 0.16 -2.91 16 6 C 0.11 3.62 5.70 86.38 0.49 4.11 16 7 N -0.72 -28.70 5.44 -466.89 -2.54 -31.24 16 8 C 0.59 27.75 7.77 86.51 0.67 28.42 16 9 O -0.58 -28.95 16.83 -4.23 -0.07 -29.02 16 10 C -0.04 -1.94 6.77 39.91 0.27 -1.67 16 11 C -0.17 -8.11 10.55 22.63 0.24 -7.87 16 12 C -0.15 -7.01 6.16 -21.34 -0.13 -7.14 16 13 C -0.08 -3.08 10.06 22.31 0.22 -2.85 16 14 C -0.15 -5.08 9.97 22.03 0.22 -4.86 16 15 C -0.12 -4.37 10.02 22.32 0.22 -4.15 16 16 C -0.12 -5.35 8.25 22.38 0.18 -5.17 16 17 C 0.05 2.60 5.24 39.06 0.20 2.81 16 18 N -0.29 -15.06 2.64 -331.35 -0.87 -15.93 16 19 C -0.46 -22.38 7.75 84.09 0.65 -21.73 16 20 H 0.11 4.82 6.21 -2.91 -0.02 4.80 16 21 C -0.01 -0.33 5.16 84.95 0.44 0.10 16 22 N -0.87 -46.86 12.36 21.67 0.27 -46.59 16 23 Si 1.12 40.55 29.92 68.60 2.05 42.60 16 24 H -0.26 -8.96 7.11 99.48 0.71 -8.25 16 25 H -0.24 -7.43 7.11 99.48 0.71 -6.72 16 26 H -0.28 -10.51 7.11 99.48 0.71 -9.80 16 27 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 28 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.05 0.96 8.14 -2.39 -0.02 0.95 16 33 H 0.05 0.99 6.56 -2.39 -0.02 0.98 16 34 H 0.07 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 36 H 0.07 1.77 6.56 -2.39 -0.02 1.76 16 37 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.07 2.06 8.10 -2.39 -0.02 2.04 16 39 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 40 H 0.41 16.58 4.33 -92.71 -0.40 16.18 16 41 H 0.15 6.38 8.06 -2.91 -0.02 6.36 16 42 H 0.14 4.29 8.06 -2.91 -0.02 4.27 16 43 H 0.15 3.79 8.06 -2.91 -0.02 3.76 16 44 H 0.14 4.32 8.06 -2.91 -0.02 4.30 16 45 H 0.10 4.89 7.18 -2.91 -0.02 4.87 16 46 H 0.27 15.75 5.51 -92.71 -0.51 15.24 16 Total: -1.00 -63.89 370.84 4.93 -58.97 By element: Atomic # 1 Polarization: 50.33 SS G_CDS: 0.83 Total: 51.16 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 5.26 Total: -29.94 kcal Atomic # 7 Polarization: -90.62 SS G_CDS: -3.15 Total: -93.77 kcal Atomic # 8 Polarization: -28.95 SS G_CDS: -0.07 Total: -29.02 kcal Atomic # 14 Polarization: 40.55 SS G_CDS: 2.05 Total: 42.60 kcal Total: -63.89 4.93 -58.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609162740.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.277 kcal (2) G-P(sol) polarization free energy of solvation -63.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds