Wall clock time and date at job start Tue Mar 31 2020 11:25:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53011 * 109.47038 * 2 1 4 4 C 1.52995 * 109.47102 * 180.02562 * 3 2 1 5 5 H 1.08996 * 109.47574 * 54.99382 * 4 3 2 6 6 C 1.52998 * 109.47175 * 175.00324 * 4 3 2 7 7 N 1.46505 * 109.47079 * 294.99485 * 4 3 2 8 8 C 1.46501 * 119.99748 * 300.00699 * 7 4 3 9 9 C 1.34775 * 120.00110 * 119.99965 * 7 4 3 10 10 O 1.21662 * 120.00132 * 6.19975 * 9 7 4 11 11 C 1.46889 * 119.99779 * 186.19742 * 9 7 4 12 12 C 1.36119 * 125.44001 * 7.92069 * 11 9 7 13 13 C 1.41704 * 107.74893 * 179.90590 * 12 11 9 14 14 C 1.40019 * 133.35224 * 180.12570 * 13 12 11 15 15 C 1.36574 * 119.82988 * 180.29862 * 14 13 12 16 16 C 1.38850 * 120.60320 * 359.95331 * 15 14 13 17 17 C 1.37841 * 120.63125 * 0.02562 * 16 15 14 18 18 C 1.39083 * 119.81731 * 0.02562 * 17 16 15 19 19 N 1.37837 * 133.16556 * 180.02562 * 18 17 16 20 20 C 1.36886 * 125.61825 * 359.97438 * 19 18 17 21 21 H 1.08005 * 120.00084 * 138.28708 * 20 19 18 22 22 C 1.39009 * 120.00206 * 318.29022 * 20 19 18 23 23 N 1.31346 * 120.00057 * 344.11969 * 22 20 19 24 24 Si 1.86809 * 120.00046 * 164.12270 * 22 20 19 25 25 H 1.48500 * 109.46997 * 89.99587 * 24 22 20 26 26 H 1.48498 * 109.46925 * 209.99661 * 24 22 20 27 27 H 1.48501 * 109.47001 * 330.00194 * 24 22 20 28 28 H 1.09007 * 109.46957 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.46878 * 300.00154 * 1 2 3 30 30 H 1.08995 * 109.47323 * 60.00003 * 1 2 3 31 31 H 1.08997 * 109.47556 * 240.00403 * 2 1 3 32 32 H 1.09003 * 109.47665 * 119.99458 * 2 1 3 33 33 H 1.08993 * 109.47287 * 60.00101 * 3 2 1 34 34 H 1.08998 * 109.46699 * 299.99793 * 3 2 1 35 35 H 1.08996 * 109.47638 * 59.99098 * 6 4 3 36 36 H 1.08998 * 109.47444 * 180.02562 * 6 4 3 37 37 H 1.09006 * 109.46693 * 299.99345 * 6 4 3 38 38 H 1.08998 * 109.47614 * 94.42514 * 8 7 4 39 39 H 1.09000 * 109.47508 * 334.41960 * 8 7 4 40 40 H 1.09002 * 109.46996 * 214.41663 * 8 7 4 41 41 H 1.08002 * 126.12494 * 0.03673 * 12 11 9 42 42 H 1.07999 * 120.08644 * 0.29355 * 14 13 12 43 43 H 1.08002 * 119.69878 * 179.97438 * 15 14 13 44 44 H 1.08009 * 119.68685 * 180.02562 * 16 15 14 45 45 H 1.08002 * 120.09375 * 179.97438 * 17 16 15 46 46 H 0.97008 * 119.99784 * 185.06499 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 1 3.9330 0.8533 -0.8426 6 6 4.0798 2.8796 -0.1263 7 7 4.0588 0.8588 1.2510 8 6 3.7052 1.4733 2.5330 9 6 4.8336 -0.2436 1.2229 10 8 5.2203 -0.6884 0.1586 11 6 5.2112 -0.9080 2.4774 12 6 4.7230 -0.6019 3.7106 13 6 5.3368 -1.4714 4.6462 14 6 5.2269 -1.6224 6.0338 15 6 5.9716 -2.5708 6.6751 16 6 6.8381 -3.3896 5.9634 17 6 6.9632 -3.2602 4.5968 18 6 6.2160 -2.3009 3.9216 19 7 6.1237 -1.9394 2.5947 20 6 6.8206 -2.5087 1.5631 21 1 6.3256 -2.7138 0.6254 22 6 8.1653 -2.8228 1.7225 23 7 8.8469 -2.3056 2.7190 24 14 9.0030 -3.9805 0.5192 25 1 9.5750 -3.1968 -0.6050 26 1 10.0903 -4.7149 1.2144 27 1 8.0093 -4.9498 -0.0084 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.8933 -0.5137 -0.8900 32 1 1.8934 -0.5137 0.8900 33 1 1.6767 1.9564 0.8899 34 1 1.6766 1.9563 -0.8900 35 1 3.7168 3.4690 0.7156 36 1 5.1698 2.8797 -0.1272 37 1 3.7161 3.3141 -1.0575 38 1 2.8227 0.9806 2.9410 39 1 3.4935 2.5319 2.3826 40 1 4.5365 1.3644 3.2296 41 1 3.9963 0.1648 3.9355 42 1 4.5550 -0.9905 6.5957 43 1 5.8855 -2.6851 7.7456 44 1 7.4197 -4.1350 6.4855 45 1 7.6401 -3.9014 4.0518 46 1 9.8012 -2.4655 2.7885 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609163772.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:25:11 Heat of formation + Delta-G solvation = 14.399720 kcal Electronic energy + Delta-G solvation = -27043.257905 eV Core-core repulsion = 23511.992744 eV Total energy + Delta-G solvation = -3531.265161 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.27265 -40.58046 -37.96929 -37.30394 -35.74699 -34.87454 -32.87109 -32.05795 -30.63804 -29.42484 -28.17538 -27.51500 -26.67011 -24.84422 -22.94225 -22.47241 -21.78705 -21.36162 -20.28089 -19.48710 -17.82683 -17.58154 -17.16414 -16.71412 -16.42566 -16.35472 -15.66573 -15.43214 -15.06089 -14.98928 -14.79874 -14.55828 -14.25594 -14.08619 -13.90050 -13.78687 -13.58833 -13.56505 -13.17510 -13.05851 -12.93811 -12.81801 -12.39225 -12.34696 -12.30932 -12.06576 -11.90978 -11.71480 -11.63808 -11.54277 -11.33118 -10.99574 -10.75492 -10.32205 -9.58709 -8.89835 -8.60607 -8.32592 -6.38145 0.18053 1.11150 1.25888 1.32644 1.40075 1.47943 1.90156 2.13143 2.50648 2.89084 3.09243 3.39156 3.66479 3.93143 4.08300 4.08799 4.25807 4.31166 4.39440 4.42959 4.44017 4.56365 4.63671 4.71580 4.74408 4.78826 4.83853 4.86532 4.89513 4.93710 5.02978 5.05539 5.09973 5.14624 5.22094 5.26967 5.33518 5.33965 5.38791 5.47481 5.47758 5.73243 5.83695 5.93189 5.98717 6.26494 6.29761 6.51110 6.60093 6.99241 7.33990 7.51254 8.37704 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011964 B = 0.005174 C = 0.004123 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2339.720851 B = 5410.773907 C = 6790.333813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.126 4.126 3 C -0.113 4.113 4 C 0.130 3.870 5 H 0.063 0.937 6 C -0.152 4.152 7 N -0.593 5.593 8 C 0.057 3.943 9 C 0.579 3.421 10 O -0.584 6.584 11 C -0.053 4.053 12 C -0.198 4.198 13 C -0.154 4.154 14 C -0.082 4.082 15 C -0.157 4.157 16 C -0.137 4.137 17 C -0.095 4.095 18 C 0.061 3.939 19 N -0.268 5.268 20 C -0.367 4.367 21 H 0.089 0.911 22 C 0.016 3.984 23 N -0.858 5.858 24 Si 0.991 3.009 25 H -0.268 1.268 26 H -0.259 1.259 27 H -0.263 1.263 28 H 0.046 0.954 29 H 0.066 0.934 30 H 0.066 0.934 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.082 0.918 36 H 0.035 0.965 37 H 0.088 0.912 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.080 0.920 41 H 0.193 0.807 42 H 0.146 0.854 43 H 0.148 0.852 44 H 0.132 0.868 45 H 0.087 0.913 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.503 8.870 2.025 15.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.164 4.164 3 C -0.150 4.150 4 C 0.027 3.973 5 H 0.081 0.919 6 C -0.210 4.210 7 N -0.326 5.326 8 C -0.084 4.084 9 C 0.370 3.630 10 O -0.466 6.466 11 C -0.168 4.168 12 C -0.225 4.225 13 C -0.159 4.159 14 C -0.101 4.101 15 C -0.176 4.176 16 C -0.157 4.157 17 C -0.115 4.115 18 C -0.054 4.054 19 N 0.070 4.930 20 C -0.495 4.495 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.488 5.488 24 Si 0.812 3.188 25 H -0.193 1.193 26 H -0.183 1.183 27 H -0.187 1.187 28 H 0.065 0.935 29 H 0.085 0.915 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.054 0.946 33 H 0.107 0.893 34 H 0.113 0.887 35 H 0.101 0.899 36 H 0.054 0.946 37 H 0.107 0.893 38 H 0.094 0.906 39 H 0.120 0.880 40 H 0.098 0.902 41 H 0.210 0.790 42 H 0.164 0.836 43 H 0.165 0.835 44 H 0.150 0.850 45 H 0.105 0.895 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -11.930 8.495 1.258 14.699 hybrid contribution 1.252 -0.911 -0.987 1.837 sum -10.678 7.583 0.271 13.100 Atomic orbital electron populations 1.21699 0.93827 1.01627 1.02746 1.21473 0.97239 0.97433 1.00251 1.21914 0.92112 0.96578 1.04442 1.21275 0.95275 0.95096 0.85651 0.91884 1.22090 1.00387 0.94387 1.04151 1.47515 1.49891 1.26262 1.08947 1.22616 1.01806 0.99706 0.84259 1.17407 0.78062 0.80711 0.86832 1.90695 1.56005 1.66720 1.33135 1.20316 1.04308 0.96717 0.95484 1.21810 1.07046 1.04638 0.88981 1.18561 1.01698 1.00625 0.94980 1.20508 0.99879 0.98765 0.90920 1.20752 0.98848 0.97657 1.00352 1.20970 1.01119 1.01611 0.92038 1.20129 0.98507 0.98114 0.94706 1.18770 1.01661 1.00683 0.84248 1.40087 1.26798 1.20916 1.05188 1.19831 0.93837 1.40954 0.94915 0.89293 1.26458 0.96428 0.97472 0.98904 1.70030 1.09020 1.39008 1.30788 0.84997 0.78062 0.78052 0.77718 1.19324 1.18269 1.18704 0.93513 0.91508 0.91465 0.94447 0.94562 0.89333 0.88680 0.89876 0.94621 0.89309 0.90605 0.87954 0.90188 0.79035 0.83610 0.83459 0.85027 0.89498 0.90748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.91 71.98 0.71 -1.93 16 2 C -0.13 -3.16 5.82 30.60 0.18 -2.99 16 3 C -0.11 -2.26 4.64 30.60 0.14 -2.12 16 4 C 0.13 3.56 2.63 44.99 0.12 3.68 16 5 H 0.06 2.21 6.91 -2.39 -0.02 2.19 16 6 C -0.15 -3.22 9.18 71.98 0.66 -2.56 16 7 N -0.59 -19.72 2.21 -827.08 -1.83 -21.55 16 8 C 0.06 1.38 7.58 127.77 0.97 2.35 16 9 C 0.58 27.17 7.62 86.51 0.66 27.83 16 10 O -0.58 -32.24 14.37 -4.23 -0.06 -32.30 16 11 C -0.05 -2.66 6.62 39.91 0.26 -2.40 16 12 C -0.20 -8.33 8.69 22.63 0.20 -8.14 16 13 C -0.15 -7.01 6.16 -21.33 -0.13 -7.15 16 14 C -0.08 -3.01 10.06 22.31 0.22 -2.79 16 15 C -0.16 -5.51 9.97 22.03 0.22 -5.29 16 16 C -0.14 -5.54 10.02 22.32 0.22 -5.32 16 17 C -0.09 -4.76 8.64 22.38 0.19 -4.56 16 18 C 0.06 3.26 6.06 39.06 0.24 3.50 16 19 N -0.27 -15.40 2.81 -331.34 -0.93 -16.33 16 20 C -0.37 -22.14 8.79 84.09 0.74 -21.40 16 21 H 0.09 5.63 6.92 -2.91 -0.02 5.61 16 22 C 0.02 0.87 4.49 84.95 0.38 1.25 16 23 N -0.86 -49.06 11.16 21.67 0.24 -48.82 16 24 Si 0.99 44.14 29.59 68.60 2.03 46.17 16 25 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 26 H -0.26 -10.64 7.11 99.48 0.71 -9.93 16 27 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 28 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 31 H 0.04 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.04 1.11 7.75 -2.39 -0.02 1.09 16 33 H 0.09 1.41 7.51 -2.39 -0.02 1.39 16 34 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 1.34 6.66 -2.39 -0.02 1.32 16 36 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.09 1.45 8.14 -2.38 -0.02 1.43 16 38 H 0.08 1.57 7.35 -2.39 -0.02 1.55 16 39 H 0.10 1.68 6.43 -2.39 -0.02 1.66 16 40 H 0.08 2.22 5.25 -2.39 -0.01 2.21 16 41 H 0.19 5.99 4.25 -2.91 -0.01 5.97 16 42 H 0.15 4.06 8.06 -2.91 -0.02 4.03 16 43 H 0.15 3.84 8.06 -2.91 -0.02 3.82 16 44 H 0.13 4.46 8.06 -2.91 -0.02 4.43 16 45 H 0.09 4.67 6.67 -2.91 -0.02 4.65 16 46 H 0.28 14.91 8.31 -92.70 -0.77 14.14 16 Total: -1.00 -77.20 363.54 6.42 -70.78 By element: Atomic # 1 Polarization: 29.09 SS G_CDS: 0.98 Total: 30.07 kcal Atomic # 6 Polarization: -34.00 SS G_CDS: 5.99 Total: -28.01 kcal Atomic # 7 Polarization: -84.18 SS G_CDS: -2.52 Total: -86.70 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -0.06 Total: -32.30 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Total: -77.20 6.42 -70.78 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609163772.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.183 kcal (2) G-P(sol) polarization free energy of solvation -77.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.985 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.783 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.400 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds