Wall clock time and date at job start Tue Mar 31 2020 10:42:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 C 1.52998 * 109.47046 * 119.99226 * 2 1 3 5 5 C 1.52991 * 109.47613 * 301.18392 * 4 2 1 6 6 C 1.52999 * 109.47141 * 181.17870 * 4 2 1 7 7 N 1.46505 * 109.46787 * 61.18546 * 4 2 1 8 8 C 1.34778 * 120.00101 * 176.47470 * 7 4 2 9 9 O 1.21668 * 119.99841 * 4.22375 * 8 7 4 10 10 C 1.46885 * 119.99953 * 184.22622 * 8 7 4 11 11 C 1.36119 * 125.43463 * 184.20405 * 10 8 7 12 12 C 1.41700 * 107.75038 * 179.87911 * 11 10 8 13 13 C 1.40020 * 133.35521 * 180.15254 * 12 11 10 14 14 C 1.36581 * 119.83114 * 180.27404 * 13 12 11 15 15 C 1.38848 * 120.60276 * 359.97438 * 14 13 12 16 16 C 1.37845 * 120.63358 * 359.97438 * 15 14 13 17 17 C 1.39092 * 119.81298 * 0.02708 * 16 15 14 18 18 N 1.37830 * 133.16411 * 180.02562 * 17 16 15 19 19 C 1.36896 * 125.61838 * 359.97438 * 18 17 16 20 20 H 1.08000 * 119.99602 * 128.15877 * 19 18 17 21 21 C 1.39009 * 120.00558 * 308.15693 * 19 18 17 22 22 N 1.31352 * 119.99411 * 4.19391 * 21 19 18 23 23 Si 1.86792 * 120.00161 * 184.19400 * 21 19 18 24 24 H 1.48496 * 109.47546 * 5.00191 * 23 21 19 25 25 H 1.48501 * 109.47023 * 124.99876 * 23 21 19 26 26 H 1.48505 * 109.47194 * 244.99858 * 23 21 19 27 27 H 1.09004 * 109.47141 * 55.87892 * 1 2 3 28 28 H 1.08997 * 109.46955 * 175.88148 * 1 2 3 29 29 H 1.08997 * 109.47160 * 295.88211 * 1 2 3 30 30 H 1.08996 * 109.47320 * 239.99748 * 2 1 3 31 31 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46919 * 299.99780 * 3 2 1 33 33 H 1.08996 * 109.47313 * 59.99743 * 3 2 1 34 34 H 1.09000 * 109.47447 * 180.02562 * 5 4 2 35 35 H 1.09005 * 109.46995 * 299.99929 * 5 4 2 36 36 H 1.08997 * 109.47783 * 59.99482 * 5 4 2 37 37 H 1.09007 * 109.47199 * 300.00781 * 6 4 2 38 38 H 1.08996 * 109.47400 * 60.00364 * 6 4 2 39 39 H 1.08999 * 109.47491 * 180.02562 * 6 4 2 40 40 H 0.97005 * 119.99678 * 356.19152 * 7 4 2 41 41 H 1.08002 * 126.13042 * 359.97438 * 11 10 8 42 42 H 1.08001 * 120.08648 * 0.25071 * 13 12 11 43 43 H 1.08001 * 119.69526 * 180.02562 * 14 13 12 44 44 H 1.08001 * 119.68891 * 180.02562 * 15 14 13 45 45 H 1.07999 * 120.09579 * 180.02562 * 16 15 14 46 46 H 0.96996 * 119.99588 * 185.00142 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5059 -0.0172 2.4983 6 6 3.5697 -0.6954 1.2643 7 7 1.5751 -2.1103 1.2352 8 6 1.9631 -2.9607 2.2062 9 8 2.6361 -2.5564 3.1357 10 6 1.5734 -4.3755 2.1423 11 6 1.8333 -5.3096 3.0977 12 6 1.2905 -6.5418 2.6561 13 6 1.2490 -7.8272 3.2096 14 6 0.6427 -8.8422 2.5256 15 6 0.0652 -8.6118 1.2842 16 6 0.0925 -7.3547 0.7192 17 6 0.7042 -6.3052 1.3967 18 7 0.8880 -4.9717 1.1007 19 6 0.4631 -4.3419 -0.0381 20 1 -0.1199 -3.4354 0.0317 21 6 0.7819 -4.8689 -1.2843 22 7 1.4196 -6.0141 -1.3693 23 14 0.3035 -3.9486 -2.8378 24 1 -0.2921 -2.6381 -2.4733 25 1 1.5107 -3.7280 -3.6740 26 1 -0.6882 -4.7479 -3.6012 27 1 -0.3634 0.5765 -0.8508 28 1 -0.3633 -1.0250 -0.0738 29 1 -0.3633 0.4486 0.9246 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.8696 -0.5307 3.3883 35 1 1.8518 1.0164 2.5087 36 1 0.4161 -0.0354 2.4877 37 1 3.9502 -1.1969 0.3744 38 1 3.9157 0.3381 1.2747 39 1 3.9331 -1.2095 2.1541 40 1 0.9847 -2.4170 0.5293 41 1 2.3579 -5.1414 4.0267 42 1 1.6955 -8.0159 4.1747 43 1 0.6115 -9.8328 2.9548 44 1 -0.4107 -9.4250 0.7564 45 1 -0.3598 -7.1852 -0.2468 46 1 1.7061 -6.3465 -2.2343 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609172561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:09 Heat of formation + Delta-G solvation = 11.235103 kcal Electronic energy + Delta-G solvation = -27465.600475 eV Core-core repulsion = 23934.198087 eV Total energy + Delta-G solvation = -3531.402389 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.55133 -39.39099 -37.01839 -35.89699 -33.65803 -32.68820 -30.76260 -30.43118 -28.86023 -27.98887 -27.49596 -26.38487 -25.03777 -23.69904 -22.27629 -20.94880 -20.06186 -19.14939 -18.68343 -18.01070 -16.48029 -15.83093 -15.59669 -14.86959 -14.62256 -14.58294 -14.37848 -14.29406 -13.60981 -13.42260 -13.12004 -12.96851 -12.87418 -12.77430 -12.64206 -12.27590 -12.00769 -11.85586 -11.70211 -11.59730 -11.48377 -11.38365 -11.18028 -11.05425 -10.91558 -10.72270 -10.63916 -10.43556 -10.31699 -10.07809 -9.74463 -9.31671 -9.03788 -8.59892 -8.40753 -7.15583 -6.84488 -6.56452 -4.77606 1.87414 2.75968 2.88173 2.93730 2.95540 3.18184 3.66939 3.85792 4.30390 4.55604 4.62319 4.81062 4.96729 5.07868 5.15186 5.44343 5.48449 5.55271 5.69335 5.72346 5.84860 5.92433 5.96906 5.97952 5.99029 6.02823 6.08469 6.16818 6.20500 6.24940 6.32482 6.41283 6.44520 6.59636 6.67791 6.72188 6.74200 6.83521 6.93417 7.11899 7.13607 7.22219 7.50880 7.59187 7.67580 7.92116 7.95620 8.32099 8.34984 8.66897 9.05251 9.29039 10.13725 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.005729 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.713210 B = 4885.902224 C = 6445.567189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.099 4.099 3 C -0.145 4.145 4 C 0.177 3.823 5 C -0.164 4.164 6 C -0.165 4.165 7 N -0.719 5.719 8 C 0.599 3.401 9 O -0.555 6.555 10 C -0.013 4.013 11 C -0.165 4.165 12 C -0.135 4.135 13 C -0.087 4.087 14 C -0.161 4.161 15 C -0.147 4.147 16 C -0.053 4.053 17 C 0.112 3.888 18 N -0.266 5.266 19 C -0.375 4.375 20 H 0.102 0.898 21 C 0.064 3.936 22 N -0.819 5.819 23 Si 0.919 3.081 24 H -0.259 1.259 25 H -0.272 1.272 26 H -0.271 1.271 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.075 0.925 31 H 0.059 0.941 32 H 0.054 0.946 33 H 0.059 0.941 34 H 0.076 0.924 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.052 0.948 38 H 0.059 0.941 39 H 0.080 0.920 40 H 0.412 0.588 41 H 0.132 0.868 42 H 0.104 0.896 43 H 0.102 0.898 44 H 0.105 0.895 45 H 0.116 0.884 46 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.538 7.584 -0.352 7.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.118 4.118 3 C -0.203 4.203 4 C 0.091 3.909 5 C -0.222 4.222 6 C -0.223 4.223 7 N -0.379 5.379 8 C 0.388 3.612 9 O -0.435 6.435 10 C -0.127 4.127 11 C -0.193 4.193 12 C -0.140 4.140 13 C -0.106 4.106 14 C -0.180 4.180 15 C -0.168 4.168 16 C -0.073 4.073 17 C -0.002 4.002 18 N 0.069 4.931 19 C -0.502 4.502 20 H 0.120 0.880 21 C -0.150 4.150 22 N -0.447 5.447 23 Si 0.743 3.257 24 H -0.182 1.182 25 H -0.197 1.197 26 H -0.196 1.196 27 H 0.073 0.927 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.093 0.907 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.095 0.905 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.071 0.929 38 H 0.078 0.922 39 H 0.099 0.901 40 H 0.258 0.742 41 H 0.150 0.850 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.123 0.877 45 H 0.134 0.866 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.133 7.938 -0.225 8.022 hybrid contribution -0.310 0.042 -1.377 1.412 sum -1.443 7.980 -1.601 8.266 Atomic orbital electron populations 1.21957 0.95024 1.02256 1.01818 1.21335 0.96222 0.96533 0.97717 1.21914 1.01310 0.95268 1.01777 1.20203 0.94195 0.81844 0.94702 1.22311 1.00881 0.99913 0.99059 1.22275 0.94776 1.01649 1.03611 1.46834 1.51791 1.09585 1.29673 1.17208 0.78655 0.83943 0.81370 1.90642 1.40550 1.77742 1.34572 1.20270 1.05355 0.93058 0.94046 1.20410 1.07723 0.90922 1.00249 1.18067 1.05976 0.93885 0.96058 1.20058 1.00308 0.91503 0.98766 1.20268 1.03378 0.97841 0.96488 1.20576 1.03802 0.95872 0.96516 1.20059 0.98588 0.90471 0.98174 1.18363 1.01662 0.86415 0.93754 1.39871 1.35486 1.05386 1.12402 1.19383 1.37492 1.11053 0.82319 0.88049 1.25715 0.94181 0.95142 0.99954 1.69927 1.31368 1.16145 1.27295 0.85983 0.79090 0.80072 0.80587 1.18248 1.19680 1.19570 0.92713 0.92348 0.92037 0.90697 0.92181 0.92717 0.92193 0.90477 0.92316 0.92647 0.92898 0.92242 0.90089 0.74163 0.85047 0.87806 0.87959 0.87719 0.86639 0.90721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.99 8.71 37.16 0.32 -1.66 16 2 C -0.10 -1.33 2.34 -90.62 -0.21 -1.54 16 3 C -0.15 -1.56 8.49 37.16 0.32 -1.24 16 4 C 0.18 2.79 0.53 -131.82 -0.07 2.72 16 5 C -0.16 -2.43 7.75 37.15 0.29 -2.14 16 6 C -0.17 -2.61 7.96 37.16 0.30 -2.31 16 7 N -0.72 -13.82 4.78 -48.84 -0.23 -14.06 16 8 C 0.60 13.28 7.19 -12.76 -0.09 13.19 16 9 O -0.56 -12.69 13.07 5.22 0.07 -12.62 16 10 C -0.01 -0.31 6.77 -82.25 -0.56 -0.87 16 11 C -0.17 -3.88 10.55 -39.02 -0.41 -4.29 16 12 C -0.14 -3.19 6.16 -106.89 -0.66 -3.85 16 13 C -0.09 -1.80 10.06 -39.51 -0.40 -2.20 16 14 C -0.16 -3.11 9.97 -39.95 -0.40 -3.50 16 15 C -0.15 -2.99 10.02 -39.50 -0.40 -3.38 16 16 C -0.05 -1.24 8.64 -39.41 -0.34 -1.58 16 17 C 0.11 2.80 6.02 -83.83 -0.50 2.29 16 18 N -0.27 -6.60 2.78 -56.08 -0.16 -6.76 16 19 C -0.38 -8.83 7.79 -15.00 -0.12 -8.95 16 20 H 0.10 2.23 6.16 -52.49 -0.32 1.91 16 21 C 0.06 1.48 5.16 -17.47 -0.09 1.39 16 22 N -0.82 -20.23 10.80 55.50 0.60 -19.63 16 23 Si 0.92 17.40 29.56 -169.99 -5.02 12.37 16 24 H -0.26 -4.60 7.11 56.52 0.40 -4.20 16 25 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 26 H -0.27 -5.13 7.11 56.52 0.40 -4.73 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.06 0.85 6.97 -51.93 -0.36 0.49 16 29 H 0.06 0.75 6.19 -51.93 -0.32 0.43 16 30 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.06 0.62 6.40 -51.93 -0.33 0.29 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.60 6.46 -51.93 -0.34 0.27 16 34 H 0.08 1.33 6.28 -51.93 -0.33 1.01 16 35 H 0.06 0.73 6.46 -51.93 -0.34 0.39 16 36 H 0.05 0.79 6.31 -51.93 -0.33 0.47 16 37 H 0.05 0.86 8.14 -51.92 -0.42 0.43 16 38 H 0.06 0.77 6.40 -51.93 -0.33 0.44 16 39 H 0.08 1.48 6.06 -51.93 -0.31 1.16 16 40 H 0.41 8.07 3.12 -40.82 -0.13 7.94 16 41 H 0.13 2.85 8.06 -52.49 -0.42 2.43 16 42 H 0.10 1.85 8.06 -52.49 -0.42 1.43 16 43 H 0.10 1.64 8.06 -52.49 -0.42 1.22 16 44 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 45 H 0.12 2.74 7.04 -52.49 -0.37 2.37 16 46 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 LS Contribution 353.38 15.07 5.33 5.33 Total: -1.00 -27.08 353.38 -8.77 -35.85 By element: Atomic # 1 Polarization: 23.78 SS G_CDS: -6.33 Total: 17.45 kcal Atomic # 6 Polarization: -14.91 SS G_CDS: -3.02 Total: -17.93 kcal Atomic # 7 Polarization: -40.65 SS G_CDS: 0.21 Total: -40.44 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: 0.07 Total: -12.62 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -5.02 Total: 12.37 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.08 -8.77 -35.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609172561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.085 kcal (2) G-P(sol) polarization free energy of solvation -27.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.767 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.850 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds