Wall clock time and date at job start Tue Mar 31 2020 10:42:06
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53003 * 1
3 3 C 1.53004 * 109.46954 * 2 1
4 4 C 1.52998 * 109.47046 * 119.99226 * 2 1 3
5 5 C 1.52991 * 109.47613 * 301.18392 * 4 2 1
6 6 C 1.52999 * 109.47141 * 181.17870 * 4 2 1
7 7 N 1.46505 * 109.46787 * 61.18546 * 4 2 1
8 8 C 1.34778 * 120.00101 * 176.47470 * 7 4 2
9 9 O 1.21668 * 119.99841 * 4.22375 * 8 7 4
10 10 C 1.46885 * 119.99953 * 184.22622 * 8 7 4
11 11 C 1.36119 * 125.43463 * 184.20405 * 10 8 7
12 12 C 1.41700 * 107.75038 * 179.87911 * 11 10 8
13 13 C 1.40020 * 133.35521 * 180.15254 * 12 11 10
14 14 C 1.36581 * 119.83114 * 180.27404 * 13 12 11
15 15 C 1.38848 * 120.60276 * 359.97438 * 14 13 12
16 16 C 1.37845 * 120.63358 * 359.97438 * 15 14 13
17 17 C 1.39092 * 119.81298 * 0.02708 * 16 15 14
18 18 N 1.37830 * 133.16411 * 180.02562 * 17 16 15
19 19 C 1.36896 * 125.61838 * 359.97438 * 18 17 16
20 20 H 1.08000 * 119.99602 * 128.15877 * 19 18 17
21 21 C 1.39009 * 120.00558 * 308.15693 * 19 18 17
22 22 N 1.31352 * 119.99411 * 4.19391 * 21 19 18
23 23 Si 1.86792 * 120.00161 * 184.19400 * 21 19 18
24 24 H 1.48496 * 109.47546 * 5.00191 * 23 21 19
25 25 H 1.48501 * 109.47023 * 124.99876 * 23 21 19
26 26 H 1.48505 * 109.47194 * 244.99858 * 23 21 19
27 27 H 1.09004 * 109.47141 * 55.87892 * 1 2 3
28 28 H 1.08997 * 109.46955 * 175.88148 * 1 2 3
29 29 H 1.08997 * 109.47160 * 295.88211 * 1 2 3
30 30 H 1.08996 * 109.47320 * 239.99748 * 2 1 3
31 31 H 1.08998 * 109.47053 * 179.97438 * 3 2 1
32 32 H 1.09007 * 109.46919 * 299.99780 * 3 2 1
33 33 H 1.08996 * 109.47313 * 59.99743 * 3 2 1
34 34 H 1.09000 * 109.47447 * 180.02562 * 5 4 2
35 35 H 1.09005 * 109.46995 * 299.99929 * 5 4 2
36 36 H 1.08997 * 109.47783 * 59.99482 * 5 4 2
37 37 H 1.09007 * 109.47199 * 300.00781 * 6 4 2
38 38 H 1.08996 * 109.47400 * 60.00364 * 6 4 2
39 39 H 1.08999 * 109.47491 * 180.02562 * 6 4 2
40 40 H 0.97005 * 119.99678 * 356.19152 * 7 4 2
41 41 H 1.08002 * 126.13042 * 359.97438 * 11 10 8
42 42 H 1.08001 * 120.08648 * 0.25071 * 13 12 11
43 43 H 1.08001 * 119.69526 * 180.02562 * 14 13 12
44 44 H 1.08001 * 119.68891 * 180.02562 * 15 14 13
45 45 H 1.07999 * 120.09579 * 180.02562 * 16 15 14
46 46 H 0.96996 * 119.99588 * 185.00142 * 22 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4426 0.0000
4 6 2.0400 -0.7211 1.2493
5 6 1.5059 -0.0172 2.4983
6 6 3.5697 -0.6954 1.2643
7 7 1.5751 -2.1103 1.2352
8 6 1.9631 -2.9607 2.2062
9 8 2.6361 -2.5564 3.1357
10 6 1.5734 -4.3755 2.1423
11 6 1.8333 -5.3096 3.0977
12 6 1.2905 -6.5418 2.6561
13 6 1.2490 -7.8272 3.2096
14 6 0.6427 -8.8422 2.5256
15 6 0.0652 -8.6118 1.2842
16 6 0.0925 -7.3547 0.7192
17 6 0.7042 -6.3052 1.3967
18 7 0.8880 -4.9717 1.1007
19 6 0.4631 -4.3419 -0.0381
20 1 -0.1199 -3.4354 0.0317
21 6 0.7819 -4.8689 -1.2843
22 7 1.4196 -6.0141 -1.3693
23 14 0.3035 -3.9486 -2.8378
24 1 -0.2921 -2.6381 -2.4733
25 1 1.5107 -3.7280 -3.6740
26 1 -0.6882 -4.7479 -3.6012
27 1 -0.3634 0.5765 -0.8508
28 1 -0.3633 -1.0250 -0.0738
29 1 -0.3633 0.4486 0.9246
30 1 1.8934 -0.5138 -0.8899
31 1 3.1300 1.4426 0.0005
32 1 1.6766 1.9564 -0.8901
33 1 1.6766 1.9564 0.8899
34 1 1.8696 -0.5307 3.3883
35 1 1.8518 1.0164 2.5087
36 1 0.4161 -0.0354 2.4877
37 1 3.9502 -1.1969 0.3744
38 1 3.9157 0.3381 1.2747
39 1 3.9331 -1.2095 2.1541
40 1 0.9847 -2.4170 0.5293
41 1 2.3579 -5.1414 4.0267
42 1 1.6955 -8.0159 4.1747
43 1 0.6115 -9.8328 2.9548
44 1 -0.4107 -9.4250 0.7564
45 1 -0.3598 -7.1852 -0.2468
46 1 1.7061 -6.3465 -2.2343
RHF calculation, no. of doubly occupied orbitals= 59
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000609172561.mol2 46
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 10:42:06
Heat of formation + Delta-G solvation = -1.389343 kcal
Electronic energy + Delta-G solvation = -27466.147912 eV
Core-core repulsion = 23934.198087 eV
Total energy + Delta-G solvation = -3531.949826 eV
No. of doubly occupied orbitals = 59
Molecular weight
(most abundant/longest-lived isotopes) = 314.174 amu
Computer time = 1.83 seconds
Orbital eigenvalues (eV)
-42.25402 -40.88256 -38.45651 -37.57755 -35.39170 -34.12698 -32.49267 -31.75205
-30.53243 -29.58214 -28.68602 -27.46907 -26.82367 -25.18226 -23.64416 -22.66501
-21.70152 -20.83487 -20.20373 -19.49051 -18.09509 -17.42791 -17.09750 -16.50091
-16.19721 -16.04958 -15.96294 -15.53158 -15.01377 -14.95547 -14.71831 -14.56530
-14.30812 -14.23818 -13.86082 -13.62548 -13.58212 -13.31726 -13.19380 -13.03982
-12.78254 -12.66279 -12.59588 -12.31715 -12.17112 -12.14795 -11.97407 -11.81327
-11.56341 -11.43635 -11.39830 -11.05068 -10.64867 -10.35116 -9.94749 -8.90479
-8.60344 -8.31028 -6.59430 0.14947 1.11549 1.33889 1.35843 1.44987
1.48821 2.06478 2.34755 2.55477 2.82044 2.88394 3.35899 3.66351
3.87747 4.04872 4.06185 4.24416 4.29414 4.41213 4.43023 4.54445
4.57994 4.73367 4.75661 4.77614 4.84765 4.87004 4.89751 4.96558
5.00896 5.04431 5.06903 5.07763 5.14426 5.20888 5.24597 5.31873
5.36971 5.45368 5.50614 5.58038 5.74399 5.80298 5.91195 5.97110
6.20915 6.26121 6.58778 6.68897 6.91641 7.37897 7.51436 8.39708
Molecular weight = 314.17amu
Principal moments of inertia in cm(-1)
A = 0.013846 B = 0.005729 C = 0.004343
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2021.713210 B = 4885.902224 C = 6445.567189
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.096 4.096
3 C -0.141 4.141
4 C 0.166 3.834
5 C -0.157 4.157
6 C -0.161 4.161
7 N -0.712 5.712
8 C 0.593 3.407
9 O -0.570 6.570
10 C -0.039 4.039
11 C -0.180 4.180
12 C -0.157 4.157
13 C -0.093 4.093
14 C -0.153 4.153
15 C -0.137 4.137
16 C -0.081 4.081
17 C 0.081 3.919
18 N -0.279 5.279
19 C -0.389 4.389
20 H 0.110 0.890
21 C 0.026 3.974
22 N -0.854 5.854
23 Si 0.982 3.018
24 H -0.239 1.239
25 H -0.273 1.273
26 H -0.269 1.269
27 H 0.074 0.926
28 H 0.035 0.965
29 H 0.069 0.931
30 H 0.065 0.935
31 H 0.064 0.936
32 H 0.071 0.929
33 H 0.070 0.930
34 H 0.048 0.952
35 H 0.089 0.911
36 H 0.058 0.942
37 H 0.042 0.958
38 H 0.092 0.908
39 H 0.051 0.949
40 H 0.411 0.589
41 H 0.140 0.860
42 H 0.133 0.867
43 H 0.146 0.854
44 H 0.136 0.864
45 H 0.100 0.900
46 H 0.283 0.717
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -2.124 8.513 -0.969 8.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.211 4.211
2 C -0.115 4.115
3 C -0.198 4.198
4 C 0.082 3.918
5 C -0.215 4.215
6 C -0.218 4.218
7 N -0.370 5.370
8 C 0.382 3.618
9 O -0.452 6.452
10 C -0.154 4.154
11 C -0.208 4.208
12 C -0.161 4.161
13 C -0.112 4.112
14 C -0.172 4.172
15 C -0.157 4.157
16 C -0.101 4.101
17 C -0.033 4.033
18 N 0.056 4.944
19 C -0.516 4.516
20 H 0.127 0.873
21 C -0.184 4.184
22 N -0.484 5.484
23 Si 0.802 3.198
24 H -0.161 1.161
25 H -0.198 1.198
26 H -0.194 1.194
27 H 0.093 0.907
28 H 0.054 0.946
29 H 0.087 0.913
30 H 0.083 0.917
31 H 0.083 0.917
32 H 0.090 0.910
33 H 0.089 0.911
34 H 0.067 0.933
35 H 0.108 0.892
36 H 0.077 0.923
37 H 0.061 0.939
38 H 0.111 0.889
39 H 0.070 0.930
40 H 0.256 0.744
41 H 0.158 0.842
42 H 0.150 0.850
43 H 0.164 0.836
44 H 0.154 0.846
45 H 0.118 0.882
46 H 0.093 0.907
Dipole moment (debyes) X Y Z Total
from point charges -1.729 8.888 -0.835 9.093
hybrid contribution -0.135 -0.346 -1.129 1.188
sum -1.864 8.542 -1.964 8.961
Atomic orbital electron populations
1.21971 0.94596 1.01305 1.03192 1.21342 0.96587 0.97966 0.95621
1.21904 1.01608 0.93106 1.03203 1.20573 0.94303 0.80229 0.96742
1.22242 1.01005 1.01105 0.97105 1.22231 0.94803 1.03197 1.01608
1.46872 1.50912 1.10793 1.28426 1.17155 0.78880 0.83808 0.81978
1.90621 1.41387 1.77905 1.35266 1.20726 1.05951 0.94345 0.94367
1.20639 1.08155 0.91320 1.00656 1.18449 1.06408 0.95176 0.96104
1.20471 1.00199 0.90522 1.00023 1.20734 1.01438 0.99386 0.95645
1.21016 1.02419 0.95396 0.96872 1.20120 1.00212 0.91657 0.98124
1.18831 1.02725 0.86919 0.94800 1.40085 1.35848 1.05692 1.12816
1.19747 1.37813 1.11458 0.82565 0.87288 1.26586 0.93642 0.95612
1.02590 1.70043 1.32712 1.17663 1.27962 0.85048 0.78658 0.79698
0.76407 1.16135 1.19781 1.19412 0.90660 0.94552 0.91253 0.91690
0.91721 0.90984 0.91121 0.93340 0.89238 0.92308 0.93890 0.88942
0.92994 0.74433 0.84180 0.84954 0.83631 0.84578 0.88216 0.90705
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.66 8.71 71.98 0.63 -3.04 16
2 C -0.10 -2.40 2.34 -10.79 -0.03 -2.42 16
3 C -0.14 -2.53 8.49 71.98 0.61 -1.92 16
4 C 0.17 5.16 0.53 3.60 0.00 5.16 16
5 C -0.16 -4.50 7.75 71.98 0.56 -3.94 16
6 C -0.16 -5.02 7.96 71.98 0.57 -4.44 16
7 N -0.71 -28.02 4.78 -426.66 -2.04 -30.06 16
8 C 0.59 27.42 7.19 86.51 0.62 28.04 16
9 O -0.57 -27.18 13.07 -4.25 -0.06 -27.24 16
10 C -0.04 -1.99 6.77 39.91 0.27 -1.72 16
11 C -0.18 -8.78 10.55 22.63 0.24 -8.54 16
12 C -0.16 -7.55 6.16 -21.33 -0.13 -7.68 16
13 C -0.09 -3.74 10.06 22.31 0.22 -3.51 16
14 C -0.15 -5.53 9.97 22.03 0.22 -5.31 16
15 C -0.14 -5.37 10.02 22.32 0.22 -5.14 16
16 C -0.08 -3.85 8.64 22.38 0.19 -3.66 16
17 C 0.08 4.18 6.02 39.06 0.24 4.41 16
18 N -0.28 -14.42 2.78 -331.34 -0.92 -15.34 16
19 C -0.39 -18.92 7.79 84.09 0.65 -18.26 16
20 H 0.11 4.94 6.16 -2.91 -0.02 4.92 16
21 C 0.03 1.23 5.16 84.95 0.44 1.66 16
22 N -0.85 -43.54 10.80 21.67 0.23 -43.30 16
23 Si 0.98 35.68 29.56 68.60 2.03 37.70 16
24 H -0.24 -7.80 7.11 99.48 0.71 -7.09 16
25 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16
26 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16
27 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16
28 H 0.04 1.01 6.97 -2.39 -0.02 1.00 16
29 H 0.07 1.53 6.19 -2.39 -0.01 1.51 16
30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16
31 H 0.06 1.11 6.40 -2.39 -0.02 1.10 16
32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16
33 H 0.07 1.13 6.46 -2.39 -0.02 1.12 16
34 H 0.05 1.68 6.28 -2.39 -0.01 1.67 16
35 H 0.09 1.98 6.46 -2.38 -0.02 1.97 16
36 H 0.06 1.62 6.31 -2.39 -0.02 1.61 16
37 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16
38 H 0.09 2.22 6.40 -2.39 -0.02 2.20 16
39 H 0.05 1.93 6.06 -2.39 -0.01 1.92 16
40 H 0.41 16.45 3.12 -92.70 -0.29 16.16 16
41 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16
42 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16
43 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16
44 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16
45 H 0.10 4.93 7.04 -2.91 -0.02 4.91 16
46 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16
Total: -1.00 -61.83 353.38 5.49 -56.33
By element:
Atomic # 1 Polarization: 51.49 SS G_CDS: 0.71 Total: 52.21 kcal
Atomic # 6 Polarization: -35.84 SS G_CDS: 5.53 Total: -30.31 kcal
Atomic # 7 Polarization: -85.97 SS G_CDS: -2.73 Total: -88.70 kcal
Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.24 kcal
Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.70 kcal
Total: -61.83 5.49 -56.33 kcal
The number of atoms in the molecule is 46
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000609172561.mol2 46
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 54.944 kcal
(2) G-P(sol) polarization free energy of solvation -61.827 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.883 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.333 kcal
(6) G-S(sol) free energy of system = (1) + (5) -1.389 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.83 seconds