Wall clock time and date at job start Tue Mar 31 2020 10:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.46954 * 2 1 4 4 C 1.52998 * 109.47046 * 119.99226 * 2 1 3 5 5 C 1.52991 * 109.47613 * 301.18392 * 4 2 1 6 6 C 1.52999 * 109.47141 * 181.17870 * 4 2 1 7 7 N 1.46505 * 109.46787 * 61.18546 * 4 2 1 8 8 C 1.34778 * 120.00101 * 176.47470 * 7 4 2 9 9 O 1.21668 * 119.99841 * 4.22375 * 8 7 4 10 10 C 1.46885 * 119.99953 * 184.22622 * 8 7 4 11 11 C 1.36119 * 125.43463 * 184.20405 * 10 8 7 12 12 C 1.41700 * 107.75038 * 179.87911 * 11 10 8 13 13 C 1.40020 * 133.35521 * 180.15254 * 12 11 10 14 14 C 1.36581 * 119.83114 * 180.27404 * 13 12 11 15 15 C 1.38848 * 120.60276 * 359.97438 * 14 13 12 16 16 C 1.37845 * 120.63358 * 359.97438 * 15 14 13 17 17 C 1.39092 * 119.81298 * 0.02708 * 16 15 14 18 18 N 1.37830 * 133.16411 * 180.02562 * 17 16 15 19 19 C 1.36896 * 125.61838 * 359.97438 * 18 17 16 20 20 H 1.08000 * 119.99602 * 128.15877 * 19 18 17 21 21 C 1.39009 * 120.00558 * 308.15693 * 19 18 17 22 22 N 1.31352 * 119.99411 * 4.19391 * 21 19 18 23 23 Si 1.86792 * 120.00161 * 184.19400 * 21 19 18 24 24 H 1.48496 * 109.47546 * 5.00191 * 23 21 19 25 25 H 1.48501 * 109.47023 * 124.99876 * 23 21 19 26 26 H 1.48505 * 109.47194 * 244.99858 * 23 21 19 27 27 H 1.09004 * 109.47141 * 55.87892 * 1 2 3 28 28 H 1.08997 * 109.46955 * 175.88148 * 1 2 3 29 29 H 1.08997 * 109.47160 * 295.88211 * 1 2 3 30 30 H 1.08996 * 109.47320 * 239.99748 * 2 1 3 31 31 H 1.08998 * 109.47053 * 179.97438 * 3 2 1 32 32 H 1.09007 * 109.46919 * 299.99780 * 3 2 1 33 33 H 1.08996 * 109.47313 * 59.99743 * 3 2 1 34 34 H 1.09000 * 109.47447 * 180.02562 * 5 4 2 35 35 H 1.09005 * 109.46995 * 299.99929 * 5 4 2 36 36 H 1.08997 * 109.47783 * 59.99482 * 5 4 2 37 37 H 1.09007 * 109.47199 * 300.00781 * 6 4 2 38 38 H 1.08996 * 109.47400 * 60.00364 * 6 4 2 39 39 H 1.08999 * 109.47491 * 180.02562 * 6 4 2 40 40 H 0.97005 * 119.99678 * 356.19152 * 7 4 2 41 41 H 1.08002 * 126.13042 * 359.97438 * 11 10 8 42 42 H 1.08001 * 120.08648 * 0.25071 * 13 12 11 43 43 H 1.08001 * 119.69526 * 180.02562 * 14 13 12 44 44 H 1.08001 * 119.68891 * 180.02562 * 15 14 13 45 45 H 1.07999 * 120.09579 * 180.02562 * 16 15 14 46 46 H 0.96996 * 119.99588 * 185.00142 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 1.2493 5 6 1.5059 -0.0172 2.4983 6 6 3.5697 -0.6954 1.2643 7 7 1.5751 -2.1103 1.2352 8 6 1.9631 -2.9607 2.2062 9 8 2.6361 -2.5564 3.1357 10 6 1.5734 -4.3755 2.1423 11 6 1.8333 -5.3096 3.0977 12 6 1.2905 -6.5418 2.6561 13 6 1.2490 -7.8272 3.2096 14 6 0.6427 -8.8422 2.5256 15 6 0.0652 -8.6118 1.2842 16 6 0.0925 -7.3547 0.7192 17 6 0.7042 -6.3052 1.3967 18 7 0.8880 -4.9717 1.1007 19 6 0.4631 -4.3419 -0.0381 20 1 -0.1199 -3.4354 0.0317 21 6 0.7819 -4.8689 -1.2843 22 7 1.4196 -6.0141 -1.3693 23 14 0.3035 -3.9486 -2.8378 24 1 -0.2921 -2.6381 -2.4733 25 1 1.5107 -3.7280 -3.6740 26 1 -0.6882 -4.7479 -3.6012 27 1 -0.3634 0.5765 -0.8508 28 1 -0.3633 -1.0250 -0.0738 29 1 -0.3633 0.4486 0.9246 30 1 1.8934 -0.5138 -0.8899 31 1 3.1300 1.4426 0.0005 32 1 1.6766 1.9564 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.8696 -0.5307 3.3883 35 1 1.8518 1.0164 2.5087 36 1 0.4161 -0.0354 2.4877 37 1 3.9502 -1.1969 0.3744 38 1 3.9157 0.3381 1.2747 39 1 3.9331 -1.2095 2.1541 40 1 0.9847 -2.4170 0.5293 41 1 2.3579 -5.1414 4.0267 42 1 1.6955 -8.0159 4.1747 43 1 0.6115 -9.8328 2.9548 44 1 -0.4107 -9.4250 0.7564 45 1 -0.3598 -7.1852 -0.2468 46 1 1.7061 -6.3465 -2.2343 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609172561.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:42:06 Heat of formation + Delta-G solvation = -1.389343 kcal Electronic energy + Delta-G solvation = -27466.147912 eV Core-core repulsion = 23934.198087 eV Total energy + Delta-G solvation = -3531.949826 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.83 seconds Orbital eigenvalues (eV) -42.25402 -40.88256 -38.45651 -37.57755 -35.39170 -34.12698 -32.49267 -31.75205 -30.53243 -29.58214 -28.68602 -27.46907 -26.82367 -25.18226 -23.64416 -22.66501 -21.70152 -20.83487 -20.20373 -19.49051 -18.09509 -17.42791 -17.09750 -16.50091 -16.19721 -16.04958 -15.96294 -15.53158 -15.01377 -14.95547 -14.71831 -14.56530 -14.30812 -14.23818 -13.86082 -13.62548 -13.58212 -13.31726 -13.19380 -13.03982 -12.78254 -12.66279 -12.59588 -12.31715 -12.17112 -12.14795 -11.97407 -11.81327 -11.56341 -11.43635 -11.39830 -11.05068 -10.64867 -10.35116 -9.94749 -8.90479 -8.60344 -8.31028 -6.59430 0.14947 1.11549 1.33889 1.35843 1.44987 1.48821 2.06478 2.34755 2.55477 2.82044 2.88394 3.35899 3.66351 3.87747 4.04872 4.06185 4.24416 4.29414 4.41213 4.43023 4.54445 4.57994 4.73367 4.75661 4.77614 4.84765 4.87004 4.89751 4.96558 5.00896 5.04431 5.06903 5.07763 5.14426 5.20888 5.24597 5.31873 5.36971 5.45368 5.50614 5.58038 5.74399 5.80298 5.91195 5.97110 6.20915 6.26121 6.58778 6.68897 6.91641 7.37897 7.51436 8.39708 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.013846 B = 0.005729 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2021.713210 B = 4885.902224 C = 6445.567189 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.096 4.096 3 C -0.141 4.141 4 C 0.166 3.834 5 C -0.157 4.157 6 C -0.161 4.161 7 N -0.712 5.712 8 C 0.593 3.407 9 O -0.570 6.570 10 C -0.039 4.039 11 C -0.180 4.180 12 C -0.157 4.157 13 C -0.093 4.093 14 C -0.153 4.153 15 C -0.137 4.137 16 C -0.081 4.081 17 C 0.081 3.919 18 N -0.279 5.279 19 C -0.389 4.389 20 H 0.110 0.890 21 C 0.026 3.974 22 N -0.854 5.854 23 Si 0.982 3.018 24 H -0.239 1.239 25 H -0.273 1.273 26 H -0.269 1.269 27 H 0.074 0.926 28 H 0.035 0.965 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.070 0.930 34 H 0.048 0.952 35 H 0.089 0.911 36 H 0.058 0.942 37 H 0.042 0.958 38 H 0.092 0.908 39 H 0.051 0.949 40 H 0.411 0.589 41 H 0.140 0.860 42 H 0.133 0.867 43 H 0.146 0.854 44 H 0.136 0.864 45 H 0.100 0.900 46 H 0.283 0.717 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.124 8.513 -0.969 8.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.115 4.115 3 C -0.198 4.198 4 C 0.082 3.918 5 C -0.215 4.215 6 C -0.218 4.218 7 N -0.370 5.370 8 C 0.382 3.618 9 O -0.452 6.452 10 C -0.154 4.154 11 C -0.208 4.208 12 C -0.161 4.161 13 C -0.112 4.112 14 C -0.172 4.172 15 C -0.157 4.157 16 C -0.101 4.101 17 C -0.033 4.033 18 N 0.056 4.944 19 C -0.516 4.516 20 H 0.127 0.873 21 C -0.184 4.184 22 N -0.484 5.484 23 Si 0.802 3.198 24 H -0.161 1.161 25 H -0.198 1.198 26 H -0.194 1.194 27 H 0.093 0.907 28 H 0.054 0.946 29 H 0.087 0.913 30 H 0.083 0.917 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.089 0.911 34 H 0.067 0.933 35 H 0.108 0.892 36 H 0.077 0.923 37 H 0.061 0.939 38 H 0.111 0.889 39 H 0.070 0.930 40 H 0.256 0.744 41 H 0.158 0.842 42 H 0.150 0.850 43 H 0.164 0.836 44 H 0.154 0.846 45 H 0.118 0.882 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -1.729 8.888 -0.835 9.093 hybrid contribution -0.135 -0.346 -1.129 1.188 sum -1.864 8.542 -1.964 8.961 Atomic orbital electron populations 1.21971 0.94596 1.01305 1.03192 1.21342 0.96587 0.97966 0.95621 1.21904 1.01608 0.93106 1.03203 1.20573 0.94303 0.80229 0.96742 1.22242 1.01005 1.01105 0.97105 1.22231 0.94803 1.03197 1.01608 1.46872 1.50912 1.10793 1.28426 1.17155 0.78880 0.83808 0.81978 1.90621 1.41387 1.77905 1.35266 1.20726 1.05951 0.94345 0.94367 1.20639 1.08155 0.91320 1.00656 1.18449 1.06408 0.95176 0.96104 1.20471 1.00199 0.90522 1.00023 1.20734 1.01438 0.99386 0.95645 1.21016 1.02419 0.95396 0.96872 1.20120 1.00212 0.91657 0.98124 1.18831 1.02725 0.86919 0.94800 1.40085 1.35848 1.05692 1.12816 1.19747 1.37813 1.11458 0.82565 0.87288 1.26586 0.93642 0.95612 1.02590 1.70043 1.32712 1.17663 1.27962 0.85048 0.78658 0.79698 0.76407 1.16135 1.19781 1.19412 0.90660 0.94552 0.91253 0.91690 0.91721 0.90984 0.91121 0.93340 0.89238 0.92308 0.93890 0.88942 0.92994 0.74433 0.84180 0.84954 0.83631 0.84578 0.88216 0.90705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.66 8.71 71.98 0.63 -3.04 16 2 C -0.10 -2.40 2.34 -10.79 -0.03 -2.42 16 3 C -0.14 -2.53 8.49 71.98 0.61 -1.92 16 4 C 0.17 5.16 0.53 3.60 0.00 5.16 16 5 C -0.16 -4.50 7.75 71.98 0.56 -3.94 16 6 C -0.16 -5.02 7.96 71.98 0.57 -4.44 16 7 N -0.71 -28.02 4.78 -426.66 -2.04 -30.06 16 8 C 0.59 27.42 7.19 86.51 0.62 28.04 16 9 O -0.57 -27.18 13.07 -4.25 -0.06 -27.24 16 10 C -0.04 -1.99 6.77 39.91 0.27 -1.72 16 11 C -0.18 -8.78 10.55 22.63 0.24 -8.54 16 12 C -0.16 -7.55 6.16 -21.33 -0.13 -7.68 16 13 C -0.09 -3.74 10.06 22.31 0.22 -3.51 16 14 C -0.15 -5.53 9.97 22.03 0.22 -5.31 16 15 C -0.14 -5.37 10.02 22.32 0.22 -5.14 16 16 C -0.08 -3.85 8.64 22.38 0.19 -3.66 16 17 C 0.08 4.18 6.02 39.06 0.24 4.41 16 18 N -0.28 -14.42 2.78 -331.34 -0.92 -15.34 16 19 C -0.39 -18.92 7.79 84.09 0.65 -18.26 16 20 H 0.11 4.94 6.16 -2.91 -0.02 4.92 16 21 C 0.03 1.23 5.16 84.95 0.44 1.66 16 22 N -0.85 -43.54 10.80 21.67 0.23 -43.30 16 23 Si 0.98 35.68 29.56 68.60 2.03 37.70 16 24 H -0.24 -7.80 7.11 99.48 0.71 -7.09 16 25 H -0.27 -9.90 7.11 99.48 0.71 -9.19 16 26 H -0.27 -9.66 7.11 99.48 0.71 -8.95 16 27 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 28 H 0.04 1.01 6.97 -2.39 -0.02 1.00 16 29 H 0.07 1.53 6.19 -2.39 -0.01 1.51 16 30 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 31 H 0.06 1.11 6.40 -2.39 -0.02 1.10 16 32 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 33 H 0.07 1.13 6.46 -2.39 -0.02 1.12 16 34 H 0.05 1.68 6.28 -2.39 -0.01 1.67 16 35 H 0.09 1.98 6.46 -2.38 -0.02 1.97 16 36 H 0.06 1.62 6.31 -2.39 -0.02 1.61 16 37 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.09 2.22 6.40 -2.39 -0.02 2.20 16 39 H 0.05 1.93 6.06 -2.39 -0.01 1.92 16 40 H 0.41 16.45 3.12 -92.70 -0.29 16.16 16 41 H 0.14 6.33 8.06 -2.91 -0.02 6.31 16 42 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 43 H 0.15 4.00 8.06 -2.91 -0.02 3.98 16 44 H 0.14 4.39 8.06 -2.91 -0.02 4.36 16 45 H 0.10 4.93 7.04 -2.91 -0.02 4.91 16 46 H 0.28 13.46 8.31 -92.71 -0.77 12.69 16 Total: -1.00 -61.83 353.38 5.49 -56.33 By element: Atomic # 1 Polarization: 51.49 SS G_CDS: 0.71 Total: 52.21 kcal Atomic # 6 Polarization: -35.84 SS G_CDS: 5.53 Total: -30.31 kcal Atomic # 7 Polarization: -85.97 SS G_CDS: -2.73 Total: -88.70 kcal Atomic # 8 Polarization: -27.18 SS G_CDS: -0.06 Total: -27.24 kcal Atomic # 14 Polarization: 35.68 SS G_CDS: 2.03 Total: 37.70 kcal Total: -61.83 5.49 -56.33 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609172561.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.944 kcal (2) G-P(sol) polarization free energy of solvation -61.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.83 seconds