Wall clock time and date at job start Tue Mar 31 2020 11:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53006 * 109.47120 * 2 1 4 4 C 1.53001 * 109.47253 * 59.99607 * 3 2 1 5 5 C 1.53009 * 109.46887 * 299.99652 * 3 2 1 6 6 N 1.46493 * 109.47210 * 180.02562 * 3 2 1 7 7 C 1.46509 * 119.99878 * 359.97438 * 6 3 2 8 8 C 1.34772 * 120.00181 * 180.02562 * 6 3 2 9 9 O 1.21672 * 120.00134 * 2.42791 * 8 6 3 10 10 C 1.46896 * 120.00168 * 182.43206 * 8 6 3 11 11 C 1.36118 * 125.43330 * 341.90002 * 10 8 6 12 12 C 1.41707 * 107.74472 * 180.28205 * 11 10 8 13 13 C 1.40019 * 133.34872 * 179.78367 * 12 11 10 14 14 C 1.36579 * 119.83070 * 179.97438 * 13 12 11 15 15 C 1.38853 * 120.59772 * 359.95154 * 14 13 12 16 16 C 1.37847 * 120.63481 * 0.02633 * 15 14 13 17 17 C 1.39087 * 119.81182 * 359.97438 * 16 15 14 18 18 N 1.37834 * 133.15889 * 180.02562 * 17 16 15 19 19 C 1.36886 * 125.62485 * 359.97438 * 18 17 16 20 20 H 1.08005 * 120.00357 * 227.68405 * 19 18 17 21 21 C 1.39007 * 120.00282 * 47.67620 * 19 18 17 22 22 N 1.31346 * 120.00680 * 187.92029 * 21 19 18 23 23 Si 1.86801 * 119.99660 * 7.92398 * 21 19 18 24 24 H 1.48496 * 109.47626 * 264.04143 * 23 21 19 25 25 H 1.48507 * 109.47244 * 24.04030 * 23 21 19 26 26 H 1.48497 * 109.47410 * 144.03789 * 23 21 19 27 27 H 1.09004 * 109.47239 * 300.00601 * 1 2 3 28 28 H 1.09010 * 109.47100 * 60.00099 * 1 2 3 29 29 H 1.08996 * 109.47116 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47090 * 240.00019 * 2 1 3 31 31 H 1.08994 * 109.46887 * 119.99580 * 2 1 3 32 32 H 1.08993 * 109.46900 * 180.02562 * 4 3 2 33 33 H 1.09003 * 109.46836 * 300.00178 * 4 3 2 34 34 H 1.08996 * 109.46753 * 60.00419 * 4 3 2 35 35 H 1.08990 * 109.46915 * 300.00358 * 5 3 2 36 36 H 1.08999 * 109.46887 * 60.00097 * 5 3 2 37 37 H 1.08996 * 109.46903 * 180.02562 * 5 3 2 38 38 H 1.09002 * 109.46948 * 266.44926 * 7 6 3 39 39 H 1.08994 * 109.46743 * 26.44778 * 7 6 3 40 40 H 1.09000 * 109.46919 * 146.44978 * 7 6 3 41 41 H 1.08000 * 126.13018 * 0.02562 * 11 10 8 42 42 H 1.08003 * 120.08533 * 359.97438 * 13 12 11 43 43 H 1.08004 * 119.69939 * 179.97438 * 14 13 12 44 44 H 1.07999 * 119.68338 * 180.02562 * 15 14 13 45 45 H 1.08001 * 120.08988 * 179.97438 * 16 15 14 46 46 H 0.97002 * 120.00100 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 1.5300 2.1639 1.2492 5 6 1.5300 2.1638 -1.2494 6 7 3.5050 1.4426 -0.0006 7 6 4.2375 0.1738 -0.0005 8 6 4.1788 2.6097 -0.0002 9 8 3.5713 3.6630 0.0453 10 6 5.6468 2.6103 -0.0548 11 6 6.4478 1.5492 0.2371 12 6 7.7923 1.9638 0.0686 13 6 9.0244 1.3174 0.2260 14 6 10.1840 1.9966 -0.0177 15 6 10.1536 3.3246 -0.4218 16 6 8.9530 3.9822 -0.5841 17 6 7.7590 3.3114 -0.3419 18 7 6.4348 3.6872 -0.4149 19 6 5.9761 4.9248 -0.7775 20 1 5.2229 5.4178 -0.1808 21 6 6.4798 5.5474 -1.9138 22 7 6.1584 6.7934 -2.1771 23 14 7.6138 4.6118 -3.0663 24 1 9.0267 4.9194 -2.7282 25 1 7.3758 3.1534 -2.9189 26 1 7.3404 5.0187 -4.4680 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5139 -0.8901 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5137 0.8900 32 1 1.8929 3.1916 1.2489 33 1 0.4399 2.1638 1.2491 34 1 1.8933 1.6501 2.1391 35 1 1.8934 1.6499 -2.1392 36 1 0.4400 2.1637 -1.2494 37 1 1.8937 3.1913 -1.2496 38 1 4.4747 -0.1087 1.0252 39 1 3.6221 -0.6010 -0.4577 40 1 5.1606 0.2872 -0.5689 41 1 6.1179 0.5684 0.5462 42 1 9.0576 0.2843 0.5392 43 1 11.1331 1.4960 0.1048 44 1 11.0795 3.8474 -0.6109 45 1 8.9397 5.0154 -0.8984 46 1 6.5097 7.2277 -2.9702 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609859877.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:01:31 Heat of formation + Delta-G solvation = 52.389554 kcal Electronic energy + Delta-G solvation = -27456.874235 eV Core-core repulsion = 23927.256437 eV Total energy + Delta-G solvation = -3529.617798 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.95814 -39.60477 -36.86477 -35.90886 -34.22983 -33.11491 -31.34332 -30.16964 -29.24268 -28.17491 -27.08754 -26.48227 -25.04721 -24.15658 -22.97224 -21.17396 -20.29227 -19.49840 -18.36751 -17.76425 -16.49899 -15.96988 -15.68957 -15.40308 -15.21168 -14.64321 -14.57097 -14.23135 -13.77252 -13.45006 -13.31892 -13.25061 -13.00420 -12.81025 -12.62934 -12.51993 -12.37577 -12.09967 -12.05209 -11.59749 -11.44283 -11.39063 -11.13830 -11.09049 -10.84248 -10.78323 -10.74740 -10.53412 -10.39054 -10.11205 -9.86730 -9.37511 -8.92109 -8.65993 -8.23731 -7.32907 -6.94059 -6.74414 -4.49012 1.60233 2.47843 2.84520 3.06544 3.13513 3.20641 3.26339 3.95190 4.09159 4.36171 4.61454 4.70032 4.80728 4.89378 5.10633 5.25214 5.33967 5.38350 5.42870 5.53705 5.62047 5.68872 5.71344 5.81407 5.85237 5.88661 5.89712 5.95463 6.01261 6.05341 6.09340 6.15391 6.18757 6.20887 6.41280 6.51519 6.62954 6.66062 6.66396 6.80229 7.04467 7.20106 7.30662 7.34106 7.61255 7.62451 7.87107 7.94905 8.31816 8.77024 8.89876 9.11559 10.29402 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015820 B = 0.005225 C = 0.004289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1769.477397 B = 5357.820528 C = 6526.224314 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.123 4.123 3 C 0.180 3.820 4 C -0.165 4.165 5 C -0.165 4.165 6 N -0.608 5.608 7 C 0.053 3.947 8 C 0.587 3.413 9 O -0.516 6.516 10 C -0.003 4.003 11 C -0.218 4.218 12 C -0.120 4.120 13 C -0.081 4.081 14 C -0.158 4.158 15 C -0.133 4.133 16 C -0.107 4.107 17 C 0.055 3.945 18 N -0.255 5.255 19 C -0.333 4.333 20 H 0.131 0.869 21 C 0.078 3.922 22 N -0.835 5.835 23 Si 0.874 3.126 24 H -0.250 1.250 25 H -0.253 1.253 26 H -0.285 1.285 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.054 0.946 30 H 0.069 0.931 31 H 0.068 0.932 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.050 0.950 35 H 0.051 0.949 36 H 0.062 0.938 37 H 0.081 0.919 38 H 0.054 0.946 39 H 0.068 0.932 40 H 0.098 0.902 41 H 0.151 0.849 42 H 0.110 0.890 43 H 0.109 0.891 44 H 0.112 0.888 45 H 0.120 0.880 46 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.910 -13.873 2.669 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.161 4.161 3 C 0.096 3.904 4 C -0.222 4.222 5 C -0.223 4.223 6 N -0.343 5.343 7 C -0.089 4.089 8 C 0.377 3.623 9 O -0.392 6.392 10 C -0.120 4.120 11 C -0.245 4.245 12 C -0.125 4.125 13 C -0.100 4.100 14 C -0.177 4.177 15 C -0.153 4.153 16 C -0.126 4.126 17 C -0.058 4.058 18 N 0.083 4.917 19 C -0.461 4.461 20 H 0.148 0.852 21 C -0.135 4.135 22 N -0.465 5.465 23 Si 0.699 3.301 24 H -0.175 1.175 25 H -0.177 1.177 26 H -0.212 1.212 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.101 0.899 33 H 0.080 0.920 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.072 0.928 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.168 0.832 42 H 0.128 0.872 43 H 0.127 0.873 44 H 0.130 0.870 45 H 0.138 0.862 46 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -4.429 -12.718 2.454 13.689 hybrid contribution 0.576 -0.281 -0.684 0.938 sum -3.853 -12.999 1.769 13.673 Atomic orbital electron populations 1.21880 0.95010 1.01594 1.02516 1.21857 0.96490 0.95465 1.02300 1.20283 0.78845 0.95114 0.96138 1.22284 1.00547 1.03169 0.96242 1.22277 1.00557 1.03166 0.96331 1.47601 1.05394 1.05838 1.75475 1.22600 0.98671 0.85874 1.01774 1.17134 0.85614 0.83094 0.76433 1.90743 1.69361 1.30645 1.48450 1.19838 0.90922 0.88182 1.13021 1.21184 0.91121 0.98436 1.13731 1.18012 0.93495 0.93766 1.07200 1.20139 0.90876 0.98470 1.00483 1.20355 0.97186 0.95002 1.05122 1.20559 0.96102 0.95080 1.03589 1.20262 0.90285 0.99929 1.02164 1.18452 0.85441 0.95259 1.06650 1.40199 1.01778 1.07944 1.41824 1.19619 1.25392 0.89927 1.11154 0.85197 1.25532 0.96014 0.95346 0.96569 1.69619 1.40241 1.10261 1.26367 0.86914 0.81511 0.82088 0.79543 1.17495 1.17665 1.21155 0.92156 0.92130 0.92700 0.91274 0.91378 0.89911 0.92033 0.93055 0.92967 0.91957 0.90005 0.92772 0.91374 0.88395 0.83187 0.87230 0.87309 0.86984 0.86239 0.90507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 9.21 37.16 0.34 -1.00 16 2 C -0.12 -1.29 3.71 -26.73 -0.10 -1.39 16 3 C 0.18 2.55 0.82 -131.81 -0.11 2.44 16 4 C -0.16 -2.36 8.05 37.16 0.30 -2.06 16 5 C -0.17 -2.49 8.05 37.16 0.30 -2.19 16 6 N -0.61 -10.03 2.82 -168.04 -0.47 -10.50 16 7 C 0.05 0.69 8.02 59.85 0.48 1.17 16 8 C 0.59 12.66 6.99 -12.76 -0.09 12.57 16 9 O -0.52 -12.66 11.50 5.21 0.06 -12.60 16 10 C 0.00 -0.06 6.54 -82.25 -0.54 -0.60 16 11 C -0.22 -4.34 8.56 -39.02 -0.33 -4.68 16 12 C -0.12 -2.56 6.16 -106.89 -0.66 -3.22 16 13 C -0.08 -1.46 10.06 -39.51 -0.40 -1.86 16 14 C -0.16 -2.74 9.97 -39.95 -0.40 -3.14 16 15 C -0.13 -2.54 10.02 -39.50 -0.40 -2.94 16 16 C -0.11 -2.42 6.74 -39.41 -0.27 -2.68 16 17 C 0.06 1.33 4.85 -83.84 -0.41 0.93 16 18 N -0.26 -6.61 2.40 -56.08 -0.13 -6.75 16 19 C -0.33 -9.44 9.26 -15.01 -0.14 -9.58 16 20 H 0.13 4.05 7.30 -52.48 -0.38 3.66 16 21 C 0.08 2.14 5.25 -17.47 -0.09 2.05 16 22 N -0.83 -23.54 13.95 55.50 0.77 -22.77 16 23 Si 0.87 21.33 23.71 -169.99 -4.03 17.30 16 24 H -0.25 -5.71 5.75 56.52 0.32 -5.38 16 25 H -0.25 -6.46 6.76 56.52 0.38 -6.08 16 26 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 27 H 0.06 0.53 6.43 -51.93 -0.33 0.19 16 28 H 0.06 0.54 6.43 -51.92 -0.33 0.21 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.07 0.69 6.91 -51.93 -0.36 0.33 16 31 H 0.07 0.66 7.76 -51.93 -0.40 0.26 16 32 H 0.08 1.48 6.08 -51.93 -0.32 1.16 16 33 H 0.06 0.73 6.43 -51.93 -0.33 0.40 16 34 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 36 H 0.06 0.77 6.43 -51.93 -0.33 0.44 16 37 H 0.08 1.55 6.25 -51.93 -0.32 1.22 16 38 H 0.05 0.62 7.55 -51.93 -0.39 0.23 16 39 H 0.07 0.70 5.60 -51.93 -0.29 0.40 16 40 H 0.10 1.39 4.86 -51.93 -0.25 1.14 16 41 H 0.15 2.35 4.66 -52.49 -0.24 2.11 16 42 H 0.11 1.61 8.06 -52.48 -0.42 1.19 16 43 H 0.11 1.52 8.06 -52.48 -0.42 1.10 16 44 H 0.11 1.82 8.06 -52.49 -0.42 1.39 16 45 H 0.12 2.79 5.73 -52.49 -0.30 2.49 16 46 H 0.28 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 341.57 15.07 5.15 5.15 Total: -1.00 -31.16 341.57 -7.53 -38.69 By element: Atomic # 1 Polarization: 14.02 SS G_CDS: -6.37 Total: 7.66 kcal Atomic # 6 Polarization: -13.67 SS G_CDS: -2.50 Total: -16.17 kcal Atomic # 7 Polarization: -40.18 SS G_CDS: 0.17 Total: -40.02 kcal Atomic # 8 Polarization: -12.66 SS G_CDS: 0.06 Total: -12.60 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -4.03 Total: 17.30 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.16 -7.53 -38.69 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609859877.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.075 kcal (2) G-P(sol) polarization free energy of solvation -31.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.685 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds