Wall clock time and date at job start Tue Mar 31 2020 11:58:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 C 1.52997 * 109.46904 * 179.97438 * 3 2 1 5 5 S 1.81407 * 109.46812 * 179.97438 * 4 3 2 6 6 C 1.81401 * 102.99904 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47243 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47093 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00358 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99939 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 C 1.53076 * 109.43981 * 84.79590 * 11 10 8 13 13 C 1.53183 * 109.29478 * 181.23571 * 12 11 10 14 14 N 1.46930 * 108.89468 * 305.57480 * 13 12 11 15 15 C 1.36937 * 120.63259 * 233.51494 * 14 13 12 16 16 H 1.08000 * 119.99761 * 151.83401 * 15 14 13 17 17 C 1.38806 * 120.00219 * 331.83653 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.07619 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.07294 * 17 15 14 20 20 H 1.48506 * 109.46812 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47258 * 119.99807 * 19 17 15 22 22 H 1.48499 * 109.47344 * 240.00342 * 19 17 15 23 23 C 1.46925 * 118.73328 * 53.53726 * 14 13 12 24 24 C 1.53033 * 109.45902 * 204.99610 * 11 10 8 25 25 H 1.08995 * 109.47191 * 60.00333 * 1 2 3 26 26 H 1.09002 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47247 * 300.00200 * 1 2 3 28 28 H 1.08997 * 109.47348 * 239.99585 * 2 1 3 29 29 H 1.09002 * 109.46993 * 119.99332 * 2 1 3 30 30 H 1.08997 * 109.47457 * 59.99652 * 3 2 1 31 31 H 1.09002 * 109.46750 * 299.99481 * 3 2 1 32 32 H 1.08997 * 109.47809 * 59.99854 * 4 3 2 33 33 H 1.09002 * 109.46993 * 299.99332 * 4 3 2 34 34 H 1.09007 * 109.47273 * 59.99776 * 6 5 4 35 35 H 1.09000 * 109.47456 * 300.00020 * 6 5 4 36 36 H 1.09003 * 109.46651 * 60.00375 * 7 6 5 37 37 H 1.09000 * 109.47238 * 300.00554 * 7 6 5 38 38 H 0.97007 * 119.99982 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.45870 * 324.97548 * 11 10 8 40 40 H 1.09005 * 109.39190 * 61.35477 * 12 11 10 41 41 H 1.09004 * 109.62337 * 301.25270 * 12 11 10 42 42 H 1.09005 * 109.58619 * 185.72200 * 13 12 11 43 43 H 1.08998 * 109.58733 * 65.43770 * 13 12 11 44 44 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58688 * 66.18006 * 23 14 13 46 46 H 1.08996 * 109.58570 * 186.45714 * 23 14 13 47 47 H 1.09003 * 109.49897 * 58.68032 * 24 11 10 48 48 H 1.09000 * 109.52987 * 298.59684 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 16 4.1745 3.1529 -0.0001 6 6 5.9770 2.9485 0.0016 7 6 6.6463 4.3244 0.0004 8 6 8.1437 4.1545 0.0012 9 8 8.6279 3.0427 0.0020 10 7 8.9448 5.2384 0.0010 11 6 10.4005 5.0733 0.0023 12 6 10.8931 4.8846 -1.4347 13 6 12.4114 4.6816 -1.4268 14 7 13.0377 5.8032 -0.7137 15 6 14.0353 6.5340 -1.3018 16 1 14.1803 7.5685 -1.0275 17 6 14.8600 5.9454 -2.2505 18 7 14.9174 4.6341 -2.3499 19 14 15.8885 7.0140 -3.3861 20 1 15.6459 8.4453 -3.0731 21 1 17.3272 6.7021 -3.1910 22 1 15.5104 6.7443 -4.7966 23 6 12.5736 6.1254 0.6426 24 6 11.0539 6.3158 0.6115 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.9337 0.9286 -0.8890 33 1 3.9328 0.9290 0.8909 34 1 6.2809 2.3963 -0.8878 35 1 6.2794 2.3977 0.8922 36 1 6.3424 4.8768 0.8896 37 1 6.3438 4.8749 -0.8904 38 1 8.5575 6.1278 -0.0001 39 1 10.6659 4.1967 0.5930 40 1 10.6475 5.7703 -2.0208 41 1 10.4115 4.0115 -1.8751 42 1 12.7810 4.6482 -2.4517 43 1 12.6523 3.7467 -0.9209 44 1 15.4940 4.2227 -3.0126 45 1 12.8257 5.3084 1.3187 46 1 13.0521 7.0432 0.9841 47 1 10.6845 6.4604 1.6268 48 1 10.8091 7.1895 0.0075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610044321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:58 Heat of formation + Delta-G solvation = -50.256355 kcal Electronic energy + Delta-G solvation = -23380.493317 eV Core-core repulsion = 19981.868410 eV Total energy + Delta-G solvation = -3398.624907 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -39.77957 -37.41101 -36.08443 -34.45376 -33.10102 -32.03713 -30.64607 -30.06183 -29.47110 -25.78105 -24.68694 -23.84902 -22.26142 -21.83689 -21.43334 -20.15586 -19.24702 -17.32082 -16.78287 -16.24445 -16.16186 -15.85486 -15.68284 -14.82172 -14.60174 -14.20860 -14.18807 -13.86913 -13.59185 -13.51867 -13.31175 -13.00850 -12.83905 -12.58881 -12.54827 -12.33981 -12.00390 -11.68108 -11.58472 -11.49973 -11.17608 -11.14048 -11.06200 -10.93688 -10.74721 -10.40950 -10.25511 -10.22894 -10.08338 -9.84438 -9.77112 -9.46396 -8.73235 -8.43622 -7.95877 -6.69223 -5.79311 -3.22617 1.30760 2.28951 2.74261 3.35953 3.40970 3.44560 3.46611 4.33102 4.41940 4.48753 4.51654 4.63593 4.71844 4.79133 4.88199 5.07621 5.15100 5.25884 5.31182 5.33191 5.34029 5.41411 5.43700 5.47501 5.49418 5.62342 5.65915 5.66057 5.76159 5.81492 5.86159 6.06638 6.22808 6.33870 6.41963 6.59204 6.64099 6.75921 6.89764 6.92829 7.36371 7.65147 7.69899 7.79210 8.36223 8.44406 9.20211 9.83473 10.40195 11.29273 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.035505 B = 0.001861 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.432733 B =15040.572032 C =15388.426367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.121 4.121 3 C -0.103 4.103 4 C -0.083 4.083 5 S -0.272 6.272 6 C -0.065 4.065 7 C -0.125 4.125 8 C 0.514 3.486 9 O -0.541 6.541 10 N -0.723 5.723 11 C 0.150 3.850 12 C -0.146 4.146 13 C 0.173 3.827 14 N -0.592 5.592 15 C -0.254 4.254 16 H 0.066 0.934 17 C 0.003 3.997 18 N -0.901 5.901 19 Si 0.902 3.098 20 H -0.277 1.277 21 H -0.290 1.290 22 H -0.289 1.289 23 C 0.148 3.852 24 C -0.138 4.138 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.055 0.945 28 H 0.064 0.936 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.101 0.899 38 H 0.396 0.604 39 H 0.081 0.919 40 H 0.054 0.946 41 H 0.053 0.947 42 H 0.089 0.911 43 H 0.020 0.980 44 H 0.254 0.746 45 H 0.020 0.980 46 H 0.058 0.942 47 H 0.055 0.945 48 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.769 -3.790 5.754 26.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.142 4.142 4 C -0.232 4.232 5 S -0.044 6.044 6 C -0.214 4.214 7 C -0.167 4.167 8 C 0.298 3.702 9 O -0.419 6.419 10 N -0.373 5.373 11 C 0.047 3.953 12 C -0.186 4.186 13 C 0.047 3.953 14 N -0.315 5.315 15 C -0.384 4.384 16 H 0.084 0.916 17 C -0.196 4.196 18 N -0.545 5.545 19 Si 0.732 3.268 20 H -0.202 1.202 21 H -0.217 1.217 22 H -0.216 1.216 23 C 0.021 3.979 24 C -0.178 4.178 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.074 0.926 28 H 0.082 0.918 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.090 0.910 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.108 0.892 35 H 0.107 0.893 36 H 0.118 0.882 37 H 0.119 0.881 38 H 0.229 0.771 39 H 0.099 0.901 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.107 0.893 43 H 0.038 0.962 44 H 0.064 0.936 45 H 0.038 0.962 46 H 0.077 0.923 47 H 0.074 0.926 48 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -25.865 -3.741 5.647 26.738 hybrid contribution 1.101 -0.204 -0.661 1.300 sum -24.764 -3.945 4.986 25.567 Atomic orbital electron populations 1.21764 0.95438 1.01785 1.02002 1.21530 0.96147 0.95965 1.02366 1.21369 0.91853 0.97577 1.03411 1.23398 0.99582 0.95021 1.05172 1.86728 1.06160 1.13308 1.98214 1.23059 0.91621 1.00105 1.06591 1.21370 0.92377 0.97484 1.05440 1.20388 0.88503 0.84998 0.76298 1.90720 1.76828 1.24744 1.49585 1.46326 1.07840 1.08502 1.74663 1.21058 0.76874 0.99154 0.98217 1.22562 1.00765 1.00563 0.94744 1.20751 0.85989 0.89131 0.99445 1.44102 1.40385 1.36219 1.10803 1.19219 1.07267 0.92577 1.19337 0.91584 1.25068 0.97546 0.95364 1.01633 1.70044 1.40568 1.08053 1.35879 0.86233 0.79781 0.79957 0.80846 1.20243 1.21711 1.21567 1.20841 0.90171 0.98566 0.88347 1.22326 0.99439 0.96860 0.99214 0.92599 0.92584 0.92620 0.91751 0.91778 0.90993 0.90964 0.89961 0.89996 0.89186 0.89255 0.88186 0.88107 0.77070 0.90092 0.92690 0.92879 0.89278 0.96165 0.93623 0.96229 0.92307 0.92626 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.74 9.91 37.16 0.37 -0.38 16 2 C -0.12 -0.65 5.93 -26.73 -0.16 -0.81 16 3 C -0.10 -0.66 5.22 -26.73 -0.14 -0.80 16 4 C -0.08 -0.63 5.94 37.16 0.22 -0.41 16 5 S -0.27 -2.60 21.74 -107.50 -2.34 -4.94 16 6 C -0.07 -0.68 5.23 37.16 0.19 -0.48 16 7 C -0.13 -1.25 5.71 -27.88 -0.16 -1.41 16 8 C 0.51 7.18 7.79 -10.98 -0.09 7.09 16 9 O -0.54 -9.86 15.64 5.56 0.09 -9.77 16 10 N -0.72 -9.74 5.08 -53.75 -0.27 -10.01 16 11 C 0.15 2.58 2.41 -67.87 -0.16 2.42 16 12 C -0.15 -2.90 5.66 -26.60 -0.15 -3.05 16 13 C 0.17 4.22 5.30 -3.71 -0.02 4.20 16 14 N -0.59 -14.76 3.00 -172.33 -0.52 -15.27 16 15 C -0.25 -6.94 9.58 -15.06 -0.14 -7.08 16 16 H 0.07 1.76 7.89 -52.49 -0.41 1.34 16 17 C 0.00 0.07 4.92 -17.43 -0.09 -0.01 16 18 N -0.90 -26.37 11.20 55.49 0.62 -25.75 16 19 Si 0.90 21.63 29.59 -169.99 -5.03 16.60 16 20 H -0.28 -6.47 7.11 56.52 0.40 -6.06 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 23 C 0.15 3.03 6.52 -3.71 -0.02 3.00 16 24 C -0.14 -2.27 5.55 -26.62 -0.15 -2.41 16 25 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 26 H 0.06 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 30 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.08 0.60 8.14 -51.92 -0.42 0.17 16 34 H 0.09 1.02 8.10 -51.92 -0.42 0.60 16 35 H 0.09 0.98 8.10 -51.92 -0.42 0.56 16 36 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 38 H 0.40 4.10 8.60 -40.82 -0.35 3.75 16 39 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 40 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 41 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 42 H 0.09 2.43 6.06 -51.93 -0.31 2.11 16 43 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 44 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 45 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 46 H 0.06 1.16 7.93 -51.93 -0.41 0.75 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 48 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 LS Contribution 394.21 15.07 5.94 5.94 Total: -1.00 -31.39 394.21 -11.05 -42.44 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: -9.05 Total: 0.91 kcal Atomic # 6 Polarization: 0.35 SS G_CDS: -0.50 Total: -0.15 kcal Atomic # 7 Polarization: -50.86 SS G_CDS: -0.17 Total: -51.03 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.09 Total: -9.77 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Atomic # 16 Polarization: -2.60 SS G_CDS: -2.34 Total: -4.94 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.39 -11.05 -42.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610044321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.819 kcal (2) G-P(sol) polarization free energy of solvation -31.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.050 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds