Wall clock time and date at job start Tue Mar 31 2020 11:58:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46904 * 2 1 4 4 C 1.52997 * 109.46904 * 179.97438 * 3 2 1 5 5 S 1.81407 * 109.46812 * 179.97438 * 4 3 2 6 6 C 1.81401 * 102.99904 * 179.97438 * 5 4 3 7 7 C 1.52999 * 109.47243 * 179.97438 * 6 5 4 8 8 C 1.50700 * 109.47093 * 180.02562 * 7 6 5 9 9 O 1.21275 * 120.00358 * 0.02562 * 8 7 6 10 10 N 1.34781 * 119.99939 * 180.02562 * 8 7 6 11 11 C 1.46500 * 119.99994 * 179.97438 * 10 8 7 12 12 C 1.53076 * 109.43981 * 84.79590 * 11 10 8 13 13 C 1.53183 * 109.29478 * 181.23571 * 12 11 10 14 14 N 1.46930 * 108.89468 * 305.57480 * 13 12 11 15 15 C 1.36937 * 120.63259 * 233.51494 * 14 13 12 16 16 H 1.08000 * 119.99761 * 151.83401 * 15 14 13 17 17 C 1.38806 * 120.00219 * 331.83653 * 15 14 13 18 18 N 1.31624 * 120.00191 * 343.07619 * 17 15 14 19 19 Si 1.86800 * 120.00146 * 163.07294 * 17 15 14 20 20 H 1.48506 * 109.46812 * 0.02562 * 19 17 15 21 21 H 1.48499 * 109.47258 * 119.99807 * 19 17 15 22 22 H 1.48499 * 109.47344 * 240.00342 * 19 17 15 23 23 C 1.46925 * 118.73328 * 53.53726 * 14 13 12 24 24 C 1.53033 * 109.45902 * 204.99610 * 11 10 8 25 25 H 1.08995 * 109.47191 * 60.00333 * 1 2 3 26 26 H 1.09002 * 109.47327 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47247 * 300.00200 * 1 2 3 28 28 H 1.08997 * 109.47348 * 239.99585 * 2 1 3 29 29 H 1.09002 * 109.46993 * 119.99332 * 2 1 3 30 30 H 1.08997 * 109.47457 * 59.99652 * 3 2 1 31 31 H 1.09002 * 109.46750 * 299.99481 * 3 2 1 32 32 H 1.08997 * 109.47809 * 59.99854 * 4 3 2 33 33 H 1.09002 * 109.46993 * 299.99332 * 4 3 2 34 34 H 1.09007 * 109.47273 * 59.99776 * 6 5 4 35 35 H 1.09000 * 109.47456 * 300.00020 * 6 5 4 36 36 H 1.09003 * 109.46651 * 60.00375 * 7 6 5 37 37 H 1.09000 * 109.47238 * 300.00554 * 7 6 5 38 38 H 0.97007 * 119.99982 * 359.97438 * 10 8 7 39 39 H 1.08994 * 109.45870 * 324.97548 * 11 10 8 40 40 H 1.09005 * 109.39190 * 61.35477 * 12 11 10 41 41 H 1.09004 * 109.62337 * 301.25270 * 12 11 10 42 42 H 1.09005 * 109.58619 * 185.72200 * 13 12 11 43 43 H 1.08998 * 109.58733 * 65.43770 * 13 12 11 44 44 H 0.96995 * 120.00379 * 180.02562 * 18 17 15 45 45 H 1.09001 * 109.58688 * 66.18006 * 23 14 13 46 46 H 1.08996 * 109.58570 * 186.45714 * 23 14 13 47 47 H 1.09003 * 109.49897 * 58.68032 * 24 11 10 48 48 H 1.09000 * 109.52987 * 298.59684 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5699 1.4426 0.0006 5 16 4.1745 3.1529 -0.0001 6 6 5.9770 2.9485 0.0016 7 6 6.6463 4.3244 0.0004 8 6 8.1437 4.1545 0.0012 9 8 8.6279 3.0427 0.0020 10 7 8.9448 5.2384 0.0010 11 6 10.4005 5.0733 0.0023 12 6 10.8931 4.8846 -1.4347 13 6 12.4114 4.6816 -1.4268 14 7 13.0377 5.8032 -0.7137 15 6 14.0353 6.5340 -1.3018 16 1 14.1803 7.5685 -1.0275 17 6 14.8600 5.9454 -2.2505 18 7 14.9174 4.6341 -2.3499 19 14 15.8885 7.0140 -3.3861 20 1 15.6459 8.4453 -3.0731 21 1 17.3272 6.7021 -3.1910 22 1 15.5104 6.7443 -4.7966 23 6 12.5736 6.1254 0.6426 24 6 11.0539 6.3158 0.6115 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8901 32 1 3.9337 0.9286 -0.8890 33 1 3.9328 0.9290 0.8909 34 1 6.2809 2.3963 -0.8878 35 1 6.2794 2.3977 0.8922 36 1 6.3424 4.8768 0.8896 37 1 6.3438 4.8749 -0.8904 38 1 8.5575 6.1278 -0.0001 39 1 10.6659 4.1967 0.5930 40 1 10.6475 5.7703 -2.0208 41 1 10.4115 4.0115 -1.8751 42 1 12.7810 4.6482 -2.4517 43 1 12.6523 3.7467 -0.9209 44 1 15.4940 4.2227 -3.0126 45 1 12.8257 5.3084 1.3187 46 1 13.0521 7.0432 0.9841 47 1 10.6845 6.4604 1.6268 48 1 10.8091 7.1895 0.0075 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000610044321.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:57 Heat of formation + Delta-G solvation = -67.994611 kcal Electronic energy + Delta-G solvation = -23381.262506 eV Core-core repulsion = 19981.868410 eV Total energy + Delta-G solvation = -3399.394096 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.01690 -39.01147 -36.56756 -36.04110 -34.18868 -33.66679 -31.75746 -31.20103 -31.11265 -27.28622 -25.85614 -24.66583 -23.92652 -23.34845 -21.99111 -21.38908 -20.81256 -18.86758 -18.18963 -17.31558 -16.92622 -16.86013 -16.68268 -16.53917 -15.71904 -15.37445 -15.30268 -15.08349 -14.96052 -14.74052 -14.46183 -14.15405 -14.07794 -13.99334 -13.49423 -13.22387 -13.17184 -13.03037 -12.68039 -12.61421 -12.54718 -12.30192 -12.15063 -12.13294 -12.02440 -11.86664 -11.72383 -11.54705 -11.51599 -11.39903 -10.98573 -10.83051 -10.60211 -10.00338 -8.72381 -8.70222 -7.88600 -5.35190 0.56962 1.46449 1.48158 1.56061 1.58976 1.63631 2.27801 2.50811 3.27621 3.63008 3.66589 3.82569 3.84025 3.89543 3.90537 3.99532 4.08079 4.18778 4.32374 4.32884 4.46439 4.51155 4.56867 4.65693 4.66209 4.69383 4.79306 4.84578 4.84620 4.88693 4.91323 5.04392 5.04826 5.07064 5.12599 5.24173 5.30983 5.32133 5.44135 5.45158 5.55818 5.63470 5.68590 6.37623 6.60228 7.12342 7.29327 7.83254 8.35936 9.18620 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.035505 B = 0.001861 C = 0.001819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.432733 B =15040.572032 C =15388.426367 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.119 4.119 3 C -0.098 4.098 4 C -0.081 4.081 5 S -0.278 6.278 6 C -0.064 4.064 7 C -0.112 4.112 8 C 0.513 3.487 9 O -0.589 6.589 10 N -0.709 5.709 11 C 0.161 3.839 12 C -0.130 4.130 13 C 0.182 3.818 14 N -0.609 5.609 15 C -0.261 4.261 16 H 0.074 0.926 17 C -0.054 4.054 18 N -0.939 5.939 19 Si 0.969 3.031 20 H -0.261 1.261 21 H -0.294 1.294 22 H -0.292 1.292 23 C 0.140 3.860 24 C -0.121 4.121 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.056 0.944 28 H 0.065 0.935 29 H 0.066 0.934 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.075 0.925 35 H 0.079 0.921 36 H 0.126 0.874 37 H 0.121 0.879 38 H 0.417 0.583 39 H 0.055 0.945 40 H 0.062 0.938 41 H 0.045 0.955 42 H 0.054 0.946 43 H -0.012 1.012 44 H 0.249 0.751 45 H 0.010 0.990 46 H 0.068 0.932 47 H 0.092 0.908 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.013 -1.840 6.417 28.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.158 4.158 3 C -0.137 4.137 4 C -0.229 4.229 5 S -0.050 6.050 6 C -0.212 4.212 7 C -0.153 4.153 8 C 0.299 3.701 9 O -0.469 6.469 10 N -0.361 5.361 11 C 0.056 3.944 12 C -0.170 4.170 13 C 0.055 3.945 14 N -0.333 5.333 15 C -0.391 4.391 16 H 0.092 0.908 17 C -0.249 4.249 18 N -0.586 5.586 19 Si 0.797 3.203 20 H -0.185 1.185 21 H -0.221 1.221 22 H -0.219 1.219 23 C 0.014 3.986 24 C -0.160 4.160 25 H 0.074 0.926 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.094 0.906 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.254 0.746 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.006 0.994 44 H 0.058 0.942 45 H 0.028 0.972 46 H 0.086 0.914 47 H 0.110 0.890 48 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -28.156 -1.733 6.339 28.913 hybrid contribution 1.764 -0.871 -0.810 2.128 sum -26.392 -2.604 5.529 27.090 Atomic orbital electron populations 1.21765 0.94952 1.02179 1.02092 1.21518 0.96539 0.95207 1.02546 1.21339 0.90864 0.98251 1.03234 1.23490 1.00326 0.93694 1.05439 1.86692 1.05055 1.15011 1.98202 1.22966 0.92555 1.00261 1.05466 1.21342 0.88732 0.97626 1.07564 1.21104 0.90159 0.84096 0.74768 1.90713 1.77940 1.26680 1.51567 1.46032 1.06026 1.09746 1.74262 1.20648 0.79287 0.98815 0.95637 1.22304 0.97200 1.00429 0.97099 1.20462 0.88983 0.88063 0.96976 1.44346 1.40345 1.35872 1.12694 1.19616 1.07211 0.93126 1.19171 0.90809 1.25876 0.99255 0.96410 1.03380 1.70215 1.41801 1.09876 1.36668 0.85183 0.77688 0.79037 0.78394 1.18540 1.22087 1.21908 1.21058 0.93201 0.98482 0.85863 1.22122 0.95903 0.96458 1.01561 0.92573 0.92067 0.92485 0.91665 0.91536 0.91057 0.91203 0.89852 0.89634 0.90625 0.90207 0.85604 0.86134 0.74610 0.92643 0.91957 0.93658 0.92752 0.99430 0.94190 0.97162 0.91384 0.88972 0.90540 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.91 71.98 0.71 -0.56 16 2 C -0.12 -1.12 5.93 30.59 0.18 -0.94 16 3 C -0.10 -1.13 5.22 30.59 0.16 -0.97 16 4 C -0.08 -1.14 5.94 71.98 0.43 -0.71 16 5 S -0.28 -4.83 21.74 -56.49 -1.23 -6.06 16 6 C -0.06 -1.25 5.23 71.98 0.38 -0.87 16 7 C -0.11 -1.93 5.71 29.85 0.17 -1.76 16 8 C 0.51 13.46 7.79 87.66 0.68 14.15 16 9 O -0.59 -21.47 15.64 -3.01 -0.05 -21.51 16 10 N -0.71 -17.28 5.08 -442.36 -2.25 -19.53 16 11 C 0.16 5.33 2.41 45.03 0.11 5.44 16 12 C -0.13 -5.19 5.66 30.68 0.17 -5.01 16 13 C 0.18 9.21 5.30 86.36 0.46 9.67 16 14 N -0.61 -30.63 3.00 -699.11 -2.09 -32.72 16 15 C -0.26 -14.27 9.58 84.03 0.81 -13.47 16 16 H 0.07 3.85 7.89 -2.91 -0.02 3.83 16 17 C -0.05 -3.05 4.92 84.86 0.42 -2.63 16 18 N -0.94 -56.99 11.20 21.65 0.24 -56.74 16 19 Si 0.97 44.94 29.59 68.60 2.03 46.97 16 20 H -0.26 -11.31 7.11 99.48 0.71 -10.60 16 21 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 22 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 23 C 0.14 5.59 6.52 86.36 0.56 6.15 16 24 C -0.12 -3.63 5.55 30.67 0.17 -3.46 16 25 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 26 H 0.06 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.46 8.14 -2.38 -0.02 0.44 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 30 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 31 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.14 8.14 -2.39 -0.02 1.13 16 34 H 0.07 1.69 8.10 -2.39 -0.02 1.67 16 35 H 0.08 1.71 8.10 -2.39 -0.02 1.69 16 36 H 0.13 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.12 1.68 8.14 -2.39 -0.02 1.66 16 38 H 0.42 6.92 8.60 -92.70 -0.80 6.13 16 39 H 0.06 2.16 7.58 -2.39 -0.02 2.14 16 40 H 0.06 2.39 8.14 -2.38 -0.02 2.37 16 41 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 42 H 0.05 3.11 6.06 -2.38 -0.01 3.09 16 43 H -0.01 -0.69 8.14 -2.39 -0.02 -0.71 16 44 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 45 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 46 H 0.07 2.57 7.93 -2.39 -0.02 2.55 16 47 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 48 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -70.44 394.21 2.17 -68.26 By element: Atomic # 1 Polarization: 16.20 SS G_CDS: 0.11 Total: 16.31 kcal Atomic # 6 Polarization: -0.39 SS G_CDS: 5.41 Total: 5.02 kcal Atomic # 7 Polarization: -104.89 SS G_CDS: -4.10 Total: -108.99 kcal Atomic # 8 Polarization: -21.47 SS G_CDS: -0.05 Total: -21.51 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Atomic # 16 Polarization: -4.83 SS G_CDS: -1.23 Total: -6.06 kcal Total: -70.44 2.17 -68.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610044321.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.270 kcal (2) G-P(sol) polarization free energy of solvation -70.438 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.995 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds