Wall clock time and date at job start Tue Mar 31 2020 11:26:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 C 1.52997 * 109.46809 * 120.00329 * 2 1 3 5 5 H 1.09000 * 109.46918 * 177.58373 * 4 2 1 6 6 N 1.46900 * 109.47485 * 57.58104 * 4 2 1 7 7 C 1.46898 * 110.99972 * 84.99822 * 6 4 2 8 8 C 1.53002 * 109.47170 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47488 * 180.02562 * 8 7 6 10 10 S 1.80992 * 109.47299 * 180.02562 * 9 8 7 11 11 C 1.76205 * 99.99982 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99922 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99731 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00480 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99721 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46923 * 89.99912 * 15 13 11 17 17 H 1.48500 * 109.47076 * 210.00179 * 15 13 11 18 18 H 1.48498 * 109.46598 * 329.99887 * 15 13 11 19 19 C 1.50700 * 109.47168 * 297.57810 * 4 2 1 20 20 O 1.21284 * 120.00222 * 83.22861 * 19 4 2 21 21 N 1.34778 * 119.99863 * 263.23136 * 19 4 2 22 22 C 1.47031 * 125.64444 * 174.36271 * 21 19 4 23 23 C 1.54326 * 107.39642 * 181.01600 * 22 21 19 24 24 C 1.55542 * 102.76199 * 22.24147 * 23 22 21 25 25 C 1.47419 * 125.65272 * 354.40543 * 21 19 4 26 26 H 1.08988 * 109.47203 * 299.99942 * 1 2 3 27 27 H 1.09005 * 109.46618 * 59.99924 * 1 2 3 28 28 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47009 * 240.00162 * 2 1 3 30 30 H 1.09004 * 109.46972 * 176.09794 * 3 2 1 31 31 H 1.08999 * 109.47598 * 296.09922 * 3 2 1 32 32 H 1.09001 * 109.46917 * 56.10181 * 3 2 1 33 33 H 1.00904 * 110.99881 * 208.95603 * 6 4 2 34 34 H 1.09002 * 109.47326 * 300.00116 * 7 6 4 35 35 H 1.08995 * 109.47269 * 60.00192 * 7 6 4 36 36 H 1.09002 * 109.46999 * 300.00204 * 8 7 6 37 37 H 1.09004 * 109.47048 * 59.99717 * 8 7 6 38 38 H 1.09002 * 109.47092 * 300.00055 * 9 8 7 39 39 H 1.09004 * 109.46811 * 59.99523 * 9 8 7 40 40 H 0.96999 * 120.00205 * 179.97438 * 14 13 11 41 41 H 1.08992 * 109.88445 * 300.51054 * 22 21 19 42 42 H 1.09003 * 109.87941 * 61.52810 * 22 21 19 43 43 H 1.09005 * 110.71857 * 140.63829 * 23 22 21 44 44 H 1.09002 * 110.72255 * 263.90421 * 23 22 21 45 45 H 1.09002 * 110.96529 * 206.40014 * 24 23 22 46 46 H 1.08998 * 111.03063 * 82.55979 * 24 23 22 47 47 H 1.09006 * 110.36502 * 274.67789 * 25 21 19 48 48 H 1.08997 * 110.36524 * 36.88609 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1291 -0.7590 1.2278 6 7 1.5032 -2.0884 1.2788 7 6 2.3404 -2.9999 0.4875 8 6 1.7505 -4.4106 0.5417 9 6 2.6228 -5.3602 -0.2819 10 16 1.9245 -7.0288 -0.2184 11 6 3.0922 -7.8874 -1.2205 12 1 3.9255 -7.3553 -1.6550 13 6 2.9410 -9.2477 -1.4515 14 7 1.9256 -9.8964 -0.9215 15 14 4.1793 -10.1581 -2.5133 16 1 5.2768 -10.6777 -1.6586 17 1 3.5061 -11.2911 -3.1977 18 1 4.7391 -9.2291 -3.5276 19 6 1.5872 0.0228 2.4790 20 8 0.4765 -0.1664 2.9277 21 7 2.4167 0.8987 3.0801 22 6 2.0670 1.7736 4.2088 23 6 3.3160 2.6159 4.5439 24 6 4.1256 2.5729 3.2165 25 6 3.8244 1.1388 2.7143 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1278 1.4433 0.0699 31 1 1.7349 1.9358 -0.9228 32 1 1.6207 1.9760 0.8530 33 1 1.4059 -2.4183 2.2274 34 1 2.3713 -2.6589 -0.5473 35 1 3.3507 -3.0123 0.8963 36 1 1.7192 -4.7519 1.5764 37 1 0.7402 -4.3979 0.1326 38 1 2.6545 -5.0191 -1.3166 39 1 3.6329 -5.3727 0.1276 40 1 1.8198 -10.8470 -1.0832 41 1 1.2423 2.4288 3.9284 42 1 1.7843 1.1704 5.0716 43 1 3.0354 3.6392 4.7939 44 1 3.8816 2.1606 5.3568 45 1 5.1910 2.7051 3.4050 46 1 3.7599 3.3188 2.5109 47 1 4.4738 0.4184 3.2118 48 1 3.9509 1.0792 1.6333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000611395613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:17 Heat of formation + Delta-G solvation = -53.930423 kcal Electronic energy + Delta-G solvation = -24309.335926 eV Core-core repulsion = 20910.551699 eV Total energy + Delta-G solvation = -3398.784227 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.74816 -38.15912 -36.74975 -34.85250 -32.41890 -32.05105 -31.77312 -29.60885 -27.15343 -27.15137 -25.58744 -24.30439 -23.48351 -21.89753 -21.34371 -20.62540 -18.84468 -17.53369 -17.40120 -16.96707 -16.27072 -15.67788 -15.20057 -14.81348 -14.74816 -14.41603 -14.20750 -13.92259 -13.84051 -13.68279 -13.51284 -12.99106 -12.87853 -12.64435 -12.60443 -12.21000 -12.06468 -11.81791 -11.78541 -11.70258 -11.43534 -11.26786 -11.10446 -11.06743 -11.01452 -10.96442 -10.78546 -10.59848 -10.38019 -9.80082 -9.49426 -9.03908 -8.96295 -8.48252 -8.26754 -6.49882 -6.20443 -3.90511 2.37866 2.58922 3.22571 3.23459 3.30292 3.57224 3.93967 4.05012 4.08565 4.24705 4.38735 4.44437 4.67714 4.71073 4.79665 4.89437 5.01131 5.06110 5.15163 5.15270 5.24645 5.28430 5.32347 5.33831 5.41504 5.42960 5.47450 5.54115 5.61848 5.66256 5.73666 5.76011 5.82894 5.90516 5.94702 5.99491 6.10367 6.21670 6.35489 6.53446 6.62316 6.73183 6.92134 7.17788 7.28932 7.62398 7.94233 8.38646 9.25574 10.87697 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.023736 B = 0.002232 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.361551 B =12542.098987 C =12736.040256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.078 4.078 3 C -0.154 4.154 4 C 0.081 3.919 5 H 0.058 0.942 6 N -0.666 5.666 7 C 0.064 3.936 8 C -0.095 4.095 9 C -0.111 4.111 10 S -0.132 6.132 11 C -0.516 4.516 12 H 0.072 0.928 13 C 0.070 3.930 14 N -0.869 5.869 15 Si 0.918 3.082 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.272 1.272 19 C 0.531 3.469 20 O -0.517 6.517 21 N -0.622 5.622 22 C 0.106 3.894 23 C -0.132 4.132 24 C -0.133 4.133 25 C 0.090 3.910 26 H 0.055 0.945 27 H 0.044 0.956 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.054 0.946 33 H 0.348 0.652 34 H 0.073 0.927 35 H 0.028 0.972 36 H 0.064 0.936 37 H 0.076 0.924 38 H 0.060 0.940 39 H 0.057 0.943 40 H 0.267 0.733 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.082 0.918 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.077 0.923 47 H 0.069 0.931 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.008 28.627 7.600 30.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.097 4.097 3 C -0.211 4.211 4 C -0.032 4.032 5 H 0.076 0.924 6 N -0.299 5.299 7 C -0.066 4.066 8 C -0.134 4.134 9 C -0.261 4.261 10 S 0.097 5.903 11 C -0.664 4.664 12 H 0.090 0.910 13 C -0.139 4.139 14 N -0.505 5.505 15 Si 0.745 3.255 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.197 1.197 19 C 0.319 3.681 20 O -0.391 6.391 21 N -0.358 5.358 22 C -0.016 4.016 23 C -0.170 4.170 24 C -0.171 4.171 25 C -0.032 4.032 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.094 0.906 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.073 0.927 33 H 0.167 0.833 34 H 0.092 0.908 35 H 0.046 0.954 36 H 0.082 0.918 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.077 0.923 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.101 0.899 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.096 0.904 47 H 0.087 0.913 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.860 27.983 7.855 29.205 hybrid contribution 2.802 -0.266 -0.684 2.897 sum 5.662 27.717 7.171 29.184 Atomic orbital electron populations 1.21741 0.93543 1.03639 1.00808 1.21025 0.97938 0.94736 0.96039 1.22020 1.00553 0.96303 1.02263 1.21598 0.97687 0.90718 0.93226 0.92393 1.60342 1.51230 0.99559 1.18722 1.22133 0.93590 0.92653 0.98215 1.21233 1.00037 0.91474 1.00655 1.23210 1.01166 1.00425 1.01257 1.84679 1.39222 0.98329 1.68120 1.22689 1.12493 0.95977 1.35271 0.91008 1.25020 0.96138 0.96612 0.96082 1.70024 1.28498 1.09467 1.42506 0.86170 0.80413 0.79044 0.79921 1.20314 1.20756 1.19707 1.20395 0.84521 0.79017 0.84216 1.90731 1.20084 1.63666 1.64634 1.48577 1.12335 1.40568 1.34359 1.21894 0.97648 0.92651 0.89445 1.22720 0.95892 1.00540 0.97854 1.22837 1.00989 0.96078 0.97182 1.22512 0.82369 0.97054 1.01305 0.92587 0.93668 0.90572 0.90027 0.92697 0.92001 0.92673 0.83295 0.90815 0.95356 0.91770 0.90505 0.92100 0.92404 0.92319 0.91516 0.91415 0.89896 0.90459 0.89681 0.90392 0.91260 0.89928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 8.65 37.16 0.32 -1.33 16 2 C -0.08 -0.79 2.84 -90.62 -0.26 -1.05 16 3 C -0.15 -1.22 8.04 37.16 0.30 -0.92 16 4 C 0.08 0.88 1.89 -68.87 -0.13 0.75 16 5 H 0.06 0.55 6.29 -51.93 -0.33 0.23 16 6 N -0.67 -8.56 5.25 -107.95 -0.57 -9.12 16 7 C 0.06 0.85 5.48 -3.82 -0.02 0.83 16 8 C -0.10 -1.58 5.48 -26.73 -0.15 -1.73 16 9 C -0.11 -2.26 5.67 37.15 0.21 -2.05 16 10 S -0.13 -3.50 21.44 -107.50 -2.30 -5.81 16 11 C -0.52 -14.94 9.50 30.94 0.29 -14.65 16 12 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 13 C 0.07 2.02 5.49 -17.43 -0.10 1.93 16 14 N -0.87 -26.28 13.22 55.49 0.73 -25.54 16 15 Si 0.92 21.68 29.55 -169.99 -5.02 16.66 16 16 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 17 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 18 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 19 C 0.53 6.27 4.98 -10.98 -0.05 6.21 16 20 O -0.52 -8.01 15.51 5.55 0.09 -7.92 16 21 N -0.62 -5.55 2.90 -170.52 -0.49 -6.04 16 22 C 0.11 0.81 6.86 -3.06 -0.02 0.79 16 23 C -0.13 -0.59 6.98 -24.69 -0.17 -0.77 16 24 C -0.13 -0.54 7.10 -24.38 -0.17 -0.72 16 25 C 0.09 0.55 6.09 -2.54 -0.02 0.53 16 26 H 0.06 0.74 6.44 -51.94 -0.33 0.40 16 27 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.08 1.04 7.54 -51.93 -0.39 0.65 16 29 H 0.08 0.83 7.51 -51.93 -0.39 0.44 16 30 H 0.05 0.36 6.24 -51.93 -0.32 0.03 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.48 7.03 -51.93 -0.37 0.12 16 33 H 0.35 4.69 8.18 -39.29 -0.32 4.36 16 34 H 0.07 0.96 7.48 -51.93 -0.39 0.57 16 35 H 0.03 0.36 8.05 -51.93 -0.42 -0.06 16 36 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.06 1.22 8.14 -51.91 -0.42 0.80 16 39 H 0.06 1.15 8.14 -51.91 -0.42 0.73 16 40 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 41 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 42 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 44 H 0.08 0.32 8.14 -51.93 -0.42 -0.11 16 45 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 46 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 47 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 48 H 0.08 0.46 4.70 -51.93 -0.24 0.21 16 LS Contribution 385.67 15.07 5.81 5.81 Total: -1.00 -33.30 385.67 -10.26 -43.56 By element: Atomic # 1 Polarization: 9.13 SS G_CDS: -8.54 Total: 0.59 kcal Atomic # 6 Polarization: -12.22 SS G_CDS: 0.04 Total: -12.18 kcal Atomic # 7 Polarization: -40.38 SS G_CDS: -0.33 Total: -40.71 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.09 Total: -7.92 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -2.30 Total: -5.81 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -33.30 -10.26 -43.56 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611395613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.366 kcal (2) G-P(sol) polarization free energy of solvation -33.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds