Wall clock time and date at job start Tue Mar 31 2020 11:26:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.47023 * 2 1 4 4 C 1.52997 * 109.46809 * 120.00329 * 2 1 3 5 5 H 1.09000 * 109.46918 * 177.58373 * 4 2 1 6 6 N 1.46900 * 109.47485 * 57.58104 * 4 2 1 7 7 C 1.46898 * 110.99972 * 84.99822 * 6 4 2 8 8 C 1.53002 * 109.47170 * 180.02562 * 7 6 4 9 9 C 1.52995 * 109.47488 * 180.02562 * 8 7 6 10 10 S 1.80992 * 109.47299 * 180.02562 * 9 8 7 11 11 C 1.76205 * 99.99982 * 179.97438 * 10 9 8 12 12 H 1.07995 * 119.99922 * 359.97438 * 11 10 9 13 13 C 1.38799 * 119.99731 * 179.97438 * 11 10 9 14 14 N 1.31629 * 120.00480 * 359.97438 * 13 11 10 15 15 Si 1.86809 * 119.99721 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.46923 * 89.99912 * 15 13 11 17 17 H 1.48500 * 109.47076 * 210.00179 * 15 13 11 18 18 H 1.48498 * 109.46598 * 329.99887 * 15 13 11 19 19 C 1.50700 * 109.47168 * 297.57810 * 4 2 1 20 20 O 1.21284 * 120.00222 * 83.22861 * 19 4 2 21 21 N 1.34778 * 119.99863 * 263.23136 * 19 4 2 22 22 C 1.47031 * 125.64444 * 174.36271 * 21 19 4 23 23 C 1.54326 * 107.39642 * 181.01600 * 22 21 19 24 24 C 1.55542 * 102.76199 * 22.24147 * 23 22 21 25 25 C 1.47419 * 125.65272 * 354.40543 * 21 19 4 26 26 H 1.08988 * 109.47203 * 299.99942 * 1 2 3 27 27 H 1.09005 * 109.46618 * 59.99924 * 1 2 3 28 28 H 1.08999 * 109.46979 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47009 * 240.00162 * 2 1 3 30 30 H 1.09004 * 109.46972 * 176.09794 * 3 2 1 31 31 H 1.08999 * 109.47598 * 296.09922 * 3 2 1 32 32 H 1.09001 * 109.46917 * 56.10181 * 3 2 1 33 33 H 1.00904 * 110.99881 * 208.95603 * 6 4 2 34 34 H 1.09002 * 109.47326 * 300.00116 * 7 6 4 35 35 H 1.08995 * 109.47269 * 60.00192 * 7 6 4 36 36 H 1.09002 * 109.46999 * 300.00204 * 8 7 6 37 37 H 1.09004 * 109.47048 * 59.99717 * 8 7 6 38 38 H 1.09002 * 109.47092 * 300.00055 * 9 8 7 39 39 H 1.09004 * 109.46811 * 59.99523 * 9 8 7 40 40 H 0.96999 * 120.00205 * 179.97438 * 14 13 11 41 41 H 1.08992 * 109.88445 * 300.51054 * 22 21 19 42 42 H 1.09003 * 109.87941 * 61.52810 * 22 21 19 43 43 H 1.09005 * 110.71857 * 140.63829 * 23 22 21 44 44 H 1.09002 * 110.72255 * 263.90421 * 23 22 21 45 45 H 1.09002 * 110.96529 * 206.40014 * 24 23 22 46 46 H 1.08998 * 111.03063 * 82.55979 * 24 23 22 47 47 H 1.09006 * 110.36502 * 274.67789 * 25 21 19 48 48 H 1.08997 * 110.36524 * 36.88609 * 25 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 3.1291 -0.7590 1.2278 6 7 1.5032 -2.0884 1.2788 7 6 2.3404 -2.9999 0.4875 8 6 1.7505 -4.4106 0.5417 9 6 2.6228 -5.3602 -0.2819 10 16 1.9245 -7.0288 -0.2184 11 6 3.0922 -7.8874 -1.2205 12 1 3.9255 -7.3553 -1.6550 13 6 2.9410 -9.2477 -1.4515 14 7 1.9256 -9.8964 -0.9215 15 14 4.1793 -10.1581 -2.5133 16 1 5.2768 -10.6777 -1.6586 17 1 3.5061 -11.2911 -3.1977 18 1 4.7391 -9.2291 -3.5276 19 6 1.5872 0.0228 2.4790 20 8 0.4765 -0.1664 2.9277 21 7 2.4167 0.8987 3.0801 22 6 2.0670 1.7736 4.2088 23 6 3.3160 2.6159 4.5439 24 6 4.1256 2.5729 3.2165 25 6 3.8244 1.1388 2.7143 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 1.8934 -0.5138 -0.8900 30 1 3.1278 1.4433 0.0699 31 1 1.7349 1.9358 -0.9228 32 1 1.6207 1.9760 0.8530 33 1 1.4059 -2.4183 2.2274 34 1 2.3713 -2.6589 -0.5473 35 1 3.3507 -3.0123 0.8963 36 1 1.7192 -4.7519 1.5764 37 1 0.7402 -4.3979 0.1326 38 1 2.6545 -5.0191 -1.3166 39 1 3.6329 -5.3727 0.1276 40 1 1.8198 -10.8470 -1.0832 41 1 1.2423 2.4288 3.9284 42 1 1.7843 1.1704 5.0716 43 1 3.0354 3.6392 4.7939 44 1 3.8816 2.1606 5.3568 45 1 5.1910 2.7051 3.4050 46 1 3.7599 3.3188 2.5109 47 1 4.4738 0.4184 3.2118 48 1 3.9509 1.0792 1.6333 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000611395613.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:26:16 Heat of formation + Delta-G solvation = -74.789480 kcal Electronic energy + Delta-G solvation = -24310.240442 eV Core-core repulsion = 20910.551699 eV Total energy + Delta-G solvation = -3399.688743 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 314.177 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.55252 -38.85132 -37.72261 -35.91828 -34.59933 -33.05456 -32.61203 -30.13490 -28.28347 -27.95509 -27.64622 -25.35756 -24.28573 -22.75640 -22.17995 -21.47284 -19.67955 -19.47076 -18.31825 -17.63961 -17.24993 -16.89133 -16.42907 -16.33666 -16.21985 -15.50517 -15.10318 -14.99906 -14.65856 -14.54148 -14.38671 -14.17200 -13.81716 -13.69309 -13.45191 -13.28515 -13.21865 -13.06250 -12.92523 -12.80577 -12.53313 -12.43917 -12.28078 -12.21329 -12.01745 -11.95167 -11.81624 -11.65418 -11.56808 -11.36784 -11.13709 -10.68476 -10.30227 -9.69226 -9.45318 -8.66596 -8.36488 -6.13244 1.31556 1.40103 1.48442 1.50362 1.73665 1.89662 2.29238 2.97619 3.03357 3.33809 3.36059 3.65621 3.78951 3.88646 3.92085 4.01751 4.06060 4.22606 4.23586 4.28641 4.32652 4.40916 4.47441 4.50766 4.58113 4.69273 4.76519 4.78570 4.81989 4.84797 4.91788 4.98805 5.01801 5.06802 5.10674 5.18393 5.19689 5.26943 5.31148 5.35847 5.39003 5.40218 5.55020 5.90853 6.18761 6.20791 6.44644 7.05361 7.09613 8.72974 Molecular weight = 314.18amu Principal moments of inertia in cm(-1) A = 0.023736 B = 0.002232 C = 0.002198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.361551 B =12542.098987 C =12736.040256 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.078 4.078 3 C -0.147 4.147 4 C 0.083 3.917 5 H 0.080 0.920 6 N -0.677 5.677 7 C 0.079 3.921 8 C -0.085 4.085 9 C -0.084 4.084 10 S -0.205 6.205 11 C -0.536 4.536 12 H 0.075 0.925 13 C 0.012 3.988 14 N -0.909 5.909 15 Si 0.996 3.004 16 H -0.267 1.267 17 H -0.275 1.275 18 H -0.261 1.261 19 C 0.527 3.473 20 O -0.566 6.566 21 N -0.619 5.619 22 C 0.098 3.902 23 C -0.123 4.123 24 C -0.125 4.125 25 C 0.081 3.919 26 H 0.036 0.964 27 H 0.057 0.943 28 H 0.052 0.948 29 H 0.087 0.913 30 H 0.076 0.924 31 H 0.070 0.930 32 H 0.044 0.956 33 H 0.342 0.658 34 H 0.083 0.917 35 H 0.043 0.957 36 H 0.058 0.942 37 H 0.063 0.937 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.271 0.729 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.097 0.903 44 H 0.084 0.916 45 H 0.106 0.894 46 H 0.082 0.918 47 H 0.076 0.924 48 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.983 30.520 6.717 32.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.097 4.097 3 C -0.204 4.204 4 C -0.029 4.029 5 H 0.098 0.902 6 N -0.310 5.310 7 C -0.052 4.052 8 C -0.124 4.124 9 C -0.233 4.233 10 S 0.023 5.977 11 C -0.683 4.683 12 H 0.093 0.907 13 C -0.193 4.193 14 N -0.545 5.545 15 Si 0.818 3.182 16 H -0.192 1.192 17 H -0.200 1.200 18 H -0.185 1.185 19 C 0.315 3.685 20 O -0.444 6.444 21 N -0.353 5.353 22 C -0.024 4.024 23 C -0.161 4.161 24 C -0.162 4.162 25 C -0.040 4.040 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.094 0.906 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.161 0.839 34 H 0.101 0.899 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.084 0.916 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.071 0.929 43 H 0.116 0.884 44 H 0.102 0.898 45 H 0.125 0.875 46 H 0.101 0.899 47 H 0.094 0.906 48 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 5.873 29.916 6.979 31.276 hybrid contribution 1.838 -0.754 -0.340 2.015 sum 7.710 29.162 6.639 30.887 Atomic orbital electron populations 1.21659 0.95206 1.01924 1.00424 1.21068 0.96492 0.96355 0.95804 1.21959 1.01762 0.94373 1.02310 1.21657 0.98725 0.89349 0.93194 0.90190 1.60282 1.51774 1.00555 1.18357 1.21923 0.93854 0.90364 0.99011 1.21110 0.98888 0.92947 0.99438 1.23114 1.01532 0.96358 1.02322 1.84759 1.40940 1.03606 1.68379 1.23037 1.12804 0.96811 1.35680 0.90699 1.26118 0.98244 0.97521 0.97368 1.70169 1.30511 1.09942 1.43919 0.84986 0.77602 0.77594 0.78036 1.19240 1.20048 1.18522 1.20561 0.84154 0.79323 0.84420 1.90706 1.22216 1.65464 1.66050 1.48664 1.13296 1.39411 1.33936 1.22039 0.99292 0.92561 0.88538 1.22712 0.94265 1.00647 0.98459 1.22856 1.02148 0.94646 0.96595 1.22793 0.80435 0.98677 1.02124 0.94484 0.92437 0.92925 0.89435 0.90565 0.91096 0.93678 0.83934 0.89889 0.93841 0.92287 0.91828 0.91586 0.91650 0.92019 0.92399 0.92924 0.88401 0.89764 0.87525 0.89934 0.90602 0.88994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.65 71.98 0.62 -2.57 16 2 C -0.08 -1.46 2.84 -10.79 -0.03 -1.49 16 3 C -0.15 -1.97 8.04 71.98 0.58 -1.39 16 4 C 0.08 1.70 1.89 44.17 0.08 1.79 16 5 H 0.08 1.29 6.29 -2.39 -0.02 1.27 16 6 N -0.68 -17.07 5.25 -495.46 -2.60 -19.67 16 7 C 0.08 1.96 5.48 86.30 0.47 2.44 16 8 C -0.08 -2.80 5.48 30.59 0.17 -2.63 16 9 C -0.08 -3.36 5.67 71.98 0.41 -2.95 16 10 S -0.21 -11.17 21.44 -56.49 -1.21 -12.39 16 11 C -0.54 -31.19 9.50 67.95 0.65 -30.55 16 12 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 13 C 0.01 0.70 5.49 84.86 0.47 1.17 16 14 N -0.91 -55.75 13.22 21.65 0.29 -55.46 16 15 Si 1.00 44.14 29.55 68.60 2.03 46.17 16 16 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 17 H -0.28 -11.80 7.11 99.48 0.71 -11.10 16 18 H -0.26 -10.99 7.11 99.48 0.71 -10.28 16 19 C 0.53 12.35 4.98 87.66 0.44 12.78 16 20 O -0.57 -18.32 15.51 -3.04 -0.05 -18.36 16 21 N -0.62 -10.38 2.90 -811.79 -2.35 -12.74 16 22 C 0.10 1.45 6.86 86.73 0.60 2.04 16 23 C -0.12 -0.82 6.98 31.92 0.22 -0.60 16 24 C -0.12 -0.60 7.10 32.12 0.23 -0.37 16 25 C 0.08 0.75 6.09 86.85 0.53 1.28 16 26 H 0.04 1.01 6.44 -2.39 -0.02 0.99 16 27 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 28 H 0.05 1.48 7.54 -2.39 -0.02 1.46 16 29 H 0.09 1.57 7.51 -2.39 -0.02 1.55 16 30 H 0.08 0.70 6.24 -2.39 -0.01 0.69 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.04 0.71 7.03 -2.39 -0.02 0.69 16 33 H 0.34 9.31 8.18 -89.69 -0.73 8.58 16 34 H 0.08 1.95 7.48 -2.39 -0.02 1.93 16 35 H 0.04 0.97 8.05 -2.39 -0.02 0.95 16 36 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 38 H 0.07 2.58 8.14 -2.39 -0.02 2.56 16 39 H 0.06 2.52 8.14 -2.39 -0.02 2.50 16 40 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 43 H 0.10 0.40 8.14 -2.38 -0.02 0.38 16 44 H 0.08 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.11 0.13 8.14 -2.39 -0.02 0.11 16 46 H 0.08 0.37 8.14 -2.39 -0.02 0.35 16 47 H 0.08 0.65 8.14 -2.38 -0.02 0.63 16 48 H 0.09 0.69 4.70 -2.39 -0.01 0.68 16 Total: -1.00 -74.66 385.67 1.72 -72.93 By element: Atomic # 1 Polarization: 20.39 SS G_CDS: 0.19 Total: 20.58 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 5.43 Total: -21.06 kcal Atomic # 7 Polarization: -83.20 SS G_CDS: -4.67 Total: -87.87 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.05 Total: -18.36 kcal Atomic # 14 Polarization: 44.14 SS G_CDS: 2.03 Total: 46.17 kcal Atomic # 16 Polarization: -11.17 SS G_CDS: -1.21 Total: -12.39 kcal Total: -74.66 1.72 -72.93 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000611395613.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.858 kcal (2) G-P(sol) polarization free energy of solvation -74.655 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds