Wall clock time and date at job start Tue Mar 31 2020 10:54:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46998 * 2 1 4 4 C 1.53004 * 109.46964 * 119.99795 * 2 1 3 5 5 C 1.53001 * 109.47259 * 175.00364 * 4 2 1 6 6 H 1.09000 * 109.47123 * 54.99239 * 5 4 2 7 7 C 1.47199 * 109.47077 * 174.99997 * 5 4 2 8 8 N 4.86397 * 126.91790 * 118.70623 * 2 1 3 9 9 N 1.46497 * 109.46611 * 295.00036 * 5 4 2 10 10 C 1.34779 * 119.99996 * 155.27665 * 9 5 4 11 11 O 1.21286 * 119.99633 * 359.72324 * 10 9 5 12 12 C 1.50700 * 120.00180 * 179.72033 * 10 9 5 13 13 C 1.53005 * 109.47139 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46886 * 54.99702 * 13 12 10 15 15 C 1.50701 * 109.46645 * 294.99976 * 13 12 10 16 16 H 1.08000 * 120.00568 * 325.84844 * 15 13 12 17 17 C 1.37880 * 119.99905 * 145.85221 * 15 13 12 18 18 N 1.31519 * 119.99531 * 6.11947 * 17 15 13 19 19 Si 1.86796 * 120.00339 * 186.11544 * 17 15 13 20 20 H 1.48493 * 109.47187 * 89.99837 * 19 17 15 21 21 H 1.48497 * 109.47394 * 210.00204 * 19 17 15 22 22 H 1.48501 * 109.46916 * 329.99989 * 19 17 15 23 23 C 1.50700 * 109.47037 * 175.00408 * 13 12 10 24 24 C 1.38232 * 120.00171 * 63.45467 * 23 13 12 25 25 C 1.38231 * 119.99695 * 179.78975 * 24 23 13 26 26 C 1.38234 * 120.00065 * 0.44039 * 25 24 23 27 27 C 1.38232 * 120.00191 * 359.81519 * 26 25 24 28 28 C 1.38234 * 119.99923 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47235 * 300.00594 * 1 2 3 30 30 H 1.09003 * 109.46886 * 59.99989 * 1 2 3 31 31 H 1.08994 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47661 * 239.99647 * 2 1 3 33 33 H 1.08990 * 109.47360 * 59.99513 * 3 2 1 34 34 H 1.09002 * 109.46694 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46642 * 299.99177 * 3 2 1 36 36 H 1.08998 * 109.47124 * 54.99626 * 4 2 1 37 37 H 1.09008 * 109.46999 * 294.99881 * 4 2 1 38 38 H 0.97005 * 120.00438 * 334.99597 * 9 5 4 39 39 H 1.09001 * 109.47076 * 299.99793 * 12 10 9 40 40 H 1.09001 * 109.46873 * 59.99947 * 12 10 9 41 41 H 0.97003 * 119.99571 * 180.02562 * 18 17 15 42 42 H 1.07999 * 120.00266 * 359.97438 * 24 23 13 43 43 H 1.08004 * 120.00477 * 180.27239 * 25 24 23 44 44 H 1.08003 * 120.00205 * 179.83508 * 26 25 24 45 45 H 1.08003 * 120.00276 * 180.02562 * 27 26 25 46 46 H 1.07993 * 120.00172 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 3.9954 0.1612 1.0528 7 6 4.0653 -1.4162 2.4426 8 7 4.4516 -1.8678 3.4108 9 7 3.9479 -1.6871 0.0628 10 6 5.1633 -1.5516 -0.5038 11 8 5.9379 -0.7175 -0.0852 12 6 5.5598 -2.4366 -1.6574 13 6 6.9772 -2.0800 -2.1101 14 1 7.6567 -2.1432 -1.2601 15 6 6.9905 -0.6772 -2.6607 16 1 6.1313 -0.2982 -3.1942 17 6 8.0997 0.1224 -2.4836 18 7 9.1895 -0.3757 -1.9415 19 14 8.0545 1.9130 -3.0135 20 1 7.5774 2.7515 -1.8846 21 1 9.4183 2.3465 -3.4102 22 1 7.1319 2.0647 -4.1672 23 6 7.4201 -3.0440 -3.1803 24 6 6.7502 -3.0909 -4.3886 25 6 7.1593 -3.9721 -5.3719 26 6 8.2326 -4.8128 -5.1435 27 6 8.8992 -4.7696 -3.9333 28 6 8.4929 -3.8854 -2.9516 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8898 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6053 -1.7197 1.2953 37 1 1.7516 -0.1582 2.1371 38 1 3.3284 -2.3543 -0.2720 39 1 5.5312 -3.4795 -1.3417 40 1 4.8656 -2.2881 -2.4845 41 1 9.9698 0.1869 -1.8165 42 1 5.9091 -2.4370 -4.5655 43 1 6.6388 -4.0058 -6.3176 44 1 8.5506 -5.5032 -5.9108 45 1 9.7380 -5.4262 -3.7551 46 1 9.0139 -3.8513 -2.0063 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619433918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:24 Heat of formation + Delta-G solvation = -5.750379 kcal Electronic energy + Delta-G solvation = -26013.575490 eV Core-core repulsion = 22481.436556 eV Total energy + Delta-G solvation = -3532.138935 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -39.64533 -38.38158 -37.32473 -35.95693 -34.14324 -33.65399 -31.50566 -30.07023 -29.98062 -28.47337 -27.29386 -25.62570 -24.39857 -22.76394 -21.63666 -20.50730 -20.05371 -19.33281 -18.01780 -16.74753 -16.42264 -16.01395 -15.78709 -15.11437 -14.52970 -14.34875 -14.25279 -14.05588 -13.81685 -13.56369 -13.26599 -13.03621 -12.79926 -12.55411 -12.47882 -12.39018 -12.32225 -12.11775 -11.90614 -11.79558 -11.64086 -11.60856 -10.96599 -10.88306 -10.80583 -10.74680 -10.70599 -10.57916 -10.26178 -10.07221 -9.47093 -9.16709 -8.98354 -8.95926 -8.35001 -8.04422 -7.61133 -5.94281 -3.94372 2.28922 2.33966 2.62321 2.84809 3.32492 3.38214 3.43450 3.44504 3.70031 4.02115 4.50903 4.59742 4.70025 4.74911 4.79215 5.07295 5.23000 5.36042 5.45138 5.47325 5.56145 5.64285 5.66370 5.72073 5.72864 5.80448 5.83428 5.85519 6.00967 6.05643 6.14755 6.20443 6.26342 6.27819 6.41335 6.52292 6.62197 6.78290 6.90276 7.03973 7.31268 7.43703 7.51643 7.61780 7.83868 7.88447 7.94678 8.05284 8.36542 8.90942 9.06047 9.68005 11.15870 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.004201 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.392501 B = 6663.636182 C = 7383.818963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.095 4.095 3 C -0.156 4.156 4 C -0.116 4.116 5 C 0.240 3.760 6 H 0.130 0.870 7 C 0.199 3.801 8 N -0.431 5.431 9 N -0.739 5.739 10 C 0.514 3.486 11 O -0.485 6.485 12 C -0.121 4.121 13 C 0.079 3.921 14 H 0.071 0.929 15 C -0.493 4.493 16 H 0.052 0.948 17 C 0.079 3.921 18 N -0.880 5.880 19 Si 0.886 3.114 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.276 1.276 23 C -0.021 4.021 24 C -0.115 4.115 25 C -0.132 4.132 26 C -0.156 4.156 27 C -0.128 4.128 28 C -0.119 4.119 29 H 0.053 0.947 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.082 0.918 33 H 0.054 0.946 34 H 0.064 0.936 35 H 0.057 0.943 36 H 0.077 0.923 37 H 0.083 0.917 38 H 0.400 0.600 39 H 0.067 0.933 40 H 0.081 0.919 41 H 0.259 0.741 42 H 0.113 0.887 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.105 0.895 46 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.683 -3.406 0.121 16.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.113 4.113 3 C -0.213 4.213 4 C -0.155 4.155 5 C 0.131 3.869 6 H 0.148 0.852 7 C -0.121 4.121 8 N -0.108 5.108 9 N -0.396 5.396 10 C 0.301 3.699 11 O -0.354 6.354 12 C -0.161 4.161 13 C 0.060 3.940 14 H 0.090 0.910 15 C -0.531 4.531 16 H 0.070 0.930 17 C -0.125 4.125 18 N -0.517 5.517 19 Si 0.714 3.286 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.201 1.201 23 C -0.021 4.021 24 C -0.133 4.133 25 C -0.150 4.150 26 C -0.174 4.174 27 C -0.146 4.146 28 C -0.137 4.137 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.100 0.900 33 H 0.073 0.927 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.095 0.905 37 H 0.102 0.898 38 H 0.235 0.765 39 H 0.085 0.915 40 H 0.099 0.901 41 H 0.069 0.931 42 H 0.131 0.869 43 H 0.123 0.877 44 H 0.122 0.878 45 H 0.123 0.877 46 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -14.274 -3.386 1.917 14.795 hybrid contribution -0.170 0.913 -0.884 1.282 sum -14.444 -2.473 1.033 14.690 Atomic orbital electron populations 1.21834 0.94955 1.01699 1.01894 1.21100 0.95621 0.96799 0.97822 1.21950 1.02060 0.95470 1.01827 1.21915 0.91248 1.02293 0.99998 1.18336 0.95106 0.95668 0.77822 0.85224 1.29996 0.93319 0.93801 0.94965 1.81127 1.08575 1.08606 1.12444 1.46310 1.18898 1.40668 1.33736 1.21112 0.80047 0.84736 0.84027 1.90795 1.49706 1.33525 1.61388 1.21811 1.02305 0.96873 0.95153 1.17846 0.89624 0.92652 0.93862 0.91048 1.20671 1.00748 0.95742 1.35901 0.92998 1.24818 0.95449 0.97802 0.94399 1.69917 1.02633 1.35661 1.43497 0.86708 0.77053 0.86200 0.78649 1.20622 1.21569 1.20079 1.20714 0.93241 0.91633 0.96552 1.20935 1.00736 0.98057 0.93578 1.20973 0.97843 0.97576 0.98600 1.20796 0.98127 1.01165 0.97296 1.20985 0.99600 0.99677 0.94356 1.21094 0.97752 0.95749 0.99119 0.92747 0.92473 0.92673 0.90004 0.92702 0.91699 0.92432 0.90478 0.89796 0.76505 0.91473 0.90100 0.93114 0.86858 0.87679 0.87832 0.87677 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.19 37.16 0.34 -0.60 16 2 C -0.09 -0.73 2.86 -90.61 -0.26 -0.99 16 3 C -0.16 -1.40 8.96 37.16 0.33 -1.07 16 4 C -0.12 -0.90 4.18 -26.73 -0.11 -1.01 16 5 C 0.24 2.82 2.28 -70.72 -0.16 2.66 16 6 H 0.13 1.70 5.78 -51.93 -0.30 1.40 16 7 C 0.20 2.93 14.93 -20.76 -0.31 2.62 16 8 N -0.43 -7.42 18.54 42.15 0.78 -6.64 16 9 N -0.74 -9.24 4.41 -56.55 -0.25 -9.49 16 10 C 0.51 9.21 7.52 -10.98 -0.08 9.13 16 11 O -0.48 -11.24 14.65 5.55 0.08 -11.16 16 12 C -0.12 -2.15 4.95 -27.88 -0.14 -2.29 16 13 C 0.08 1.82 1.67 -92.92 -0.16 1.66 16 14 H 0.07 1.92 6.98 -51.93 -0.36 1.56 16 15 C -0.49 -12.68 6.37 -34.44 -0.22 -12.90 16 16 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 17 C 0.08 2.17 5.45 -17.82 -0.10 2.07 16 18 N -0.88 -25.56 12.87 55.43 0.71 -24.85 16 19 Si 0.89 21.70 29.54 -169.99 -5.02 16.67 16 20 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 21 H -0.29 -7.13 7.11 56.52 0.40 -6.72 16 22 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 23 C -0.02 -0.45 4.77 -104.62 -0.50 -0.94 16 24 C -0.11 -2.24 8.86 -39.59 -0.35 -2.59 16 25 C -0.13 -2.30 10.05 -39.59 -0.40 -2.70 16 26 C -0.16 -2.67 10.05 -39.58 -0.40 -3.07 16 27 C -0.13 -2.34 10.05 -39.58 -0.40 -2.74 16 28 C -0.12 -2.49 9.67 -39.58 -0.38 -2.87 16 29 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 30 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 31 H 0.05 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.08 0.68 7.62 -51.93 -0.40 0.28 16 33 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.06 0.71 6.46 -51.93 -0.34 0.38 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 38 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 39 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 1.28 7.78 -51.93 -0.40 0.87 16 41 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.11 2.09 7.76 -52.49 -0.41 1.68 16 43 H 0.11 1.54 8.06 -52.48 -0.42 1.12 16 44 H 0.10 1.48 8.06 -52.48 -0.42 1.06 16 45 H 0.11 1.66 8.06 -52.48 -0.42 1.24 16 46 H 0.11 2.41 7.95 -52.49 -0.42 1.99 16 LS Contribution 387.50 15.07 5.84 5.84 Total: -1.00 -32.92 387.50 -8.31 -41.23 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -7.17 Total: 4.02 kcal Atomic # 6 Polarization: -12.34 SS G_CDS: -3.29 Total: -15.62 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: 1.25 Total: -40.98 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.08 Total: -11.16 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 5.84 Total: 5.84 kcal Total: -32.92 -8.31 -41.23 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619433918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.480 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.750 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds