Wall clock time and date at job start Tue Mar 31 2020 10:54:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53004 * 109.46998 * 2 1 4 4 C 1.53004 * 109.46964 * 119.99795 * 2 1 3 5 5 C 1.53001 * 109.47259 * 175.00364 * 4 2 1 6 6 H 1.09000 * 109.47123 * 54.99239 * 5 4 2 7 7 C 1.47199 * 109.47077 * 174.99997 * 5 4 2 8 8 N 4.86397 * 126.91790 * 118.70623 * 2 1 3 9 9 N 1.46497 * 109.46611 * 295.00036 * 5 4 2 10 10 C 1.34779 * 119.99996 * 155.27665 * 9 5 4 11 11 O 1.21286 * 119.99633 * 359.72324 * 10 9 5 12 12 C 1.50700 * 120.00180 * 179.72033 * 10 9 5 13 13 C 1.53005 * 109.47139 * 180.02562 * 12 10 9 14 14 H 1.09002 * 109.46886 * 54.99702 * 13 12 10 15 15 C 1.50701 * 109.46645 * 294.99976 * 13 12 10 16 16 H 1.08000 * 120.00568 * 325.84844 * 15 13 12 17 17 C 1.37880 * 119.99905 * 145.85221 * 15 13 12 18 18 N 1.31519 * 119.99531 * 6.11947 * 17 15 13 19 19 Si 1.86796 * 120.00339 * 186.11544 * 17 15 13 20 20 H 1.48493 * 109.47187 * 89.99837 * 19 17 15 21 21 H 1.48497 * 109.47394 * 210.00204 * 19 17 15 22 22 H 1.48501 * 109.46916 * 329.99989 * 19 17 15 23 23 C 1.50700 * 109.47037 * 175.00408 * 13 12 10 24 24 C 1.38232 * 120.00171 * 63.45467 * 23 13 12 25 25 C 1.38231 * 119.99695 * 179.78975 * 24 23 13 26 26 C 1.38234 * 120.00065 * 0.44039 * 25 24 23 27 27 C 1.38232 * 120.00191 * 359.81519 * 26 25 24 28 28 C 1.38234 * 119.99923 * 359.97438 * 27 26 25 29 29 H 1.09003 * 109.47235 * 300.00594 * 1 2 3 30 30 H 1.09003 * 109.46886 * 59.99989 * 1 2 3 31 31 H 1.08994 * 109.47215 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47661 * 239.99647 * 2 1 3 33 33 H 1.08990 * 109.47360 * 59.99513 * 3 2 1 34 34 H 1.09002 * 109.46694 * 179.97438 * 3 2 1 35 35 H 1.08998 * 109.46642 * 299.99177 * 3 2 1 36 36 H 1.08998 * 109.47124 * 54.99626 * 4 2 1 37 37 H 1.09008 * 109.46999 * 294.99881 * 4 2 1 38 38 H 0.97005 * 120.00438 * 334.99597 * 9 5 4 39 39 H 1.09001 * 109.47076 * 299.99793 * 12 10 9 40 40 H 1.09001 * 109.46873 * 59.99947 * 12 10 9 41 41 H 0.97003 * 119.99571 * 180.02562 * 18 17 15 42 42 H 1.07999 * 120.00266 * 359.97438 * 24 23 13 43 43 H 1.08004 * 120.00477 * 180.27239 * 25 24 23 44 44 H 1.08003 * 120.00205 * 179.83508 * 26 25 24 45 45 H 1.08003 * 120.00276 * 180.02562 * 27 26 25 46 46 H 1.07993 * 120.00172 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5648 -0.8310 1.1881 6 1 3.9954 0.1612 1.0528 7 6 4.0653 -1.4162 2.4426 8 7 4.4516 -1.8678 3.4108 9 7 3.9479 -1.6871 0.0628 10 6 5.1633 -1.5516 -0.5038 11 8 5.9379 -0.7175 -0.0852 12 6 5.5598 -2.4366 -1.6574 13 6 6.9772 -2.0800 -2.1101 14 1 7.6567 -2.1432 -1.2601 15 6 6.9905 -0.6772 -2.6607 16 1 6.1313 -0.2982 -3.1942 17 6 8.0997 0.1224 -2.4836 18 7 9.1895 -0.3757 -1.9415 19 14 8.0545 1.9130 -3.0135 20 1 7.5774 2.7515 -1.8846 21 1 9.4183 2.3465 -3.4102 22 1 7.1319 2.0647 -4.1672 23 6 7.4201 -3.0440 -3.1803 24 6 6.7502 -3.0909 -4.3886 25 6 7.1593 -3.9721 -5.3719 26 6 8.2326 -4.8128 -5.1435 27 6 8.8992 -4.7696 -3.9333 28 6 8.4929 -3.8854 -2.9516 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.8934 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8898 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9562 -0.8901 36 1 1.6053 -1.7197 1.2953 37 1 1.7516 -0.1582 2.1371 38 1 3.3284 -2.3543 -0.2720 39 1 5.5312 -3.4795 -1.3417 40 1 4.8656 -2.2881 -2.4845 41 1 9.9698 0.1869 -1.8165 42 1 5.9091 -2.4370 -4.5655 43 1 6.6388 -4.0058 -6.3176 44 1 8.5506 -5.5032 -5.9108 45 1 9.7380 -5.4262 -3.7551 46 1 9.0139 -3.8513 -2.0063 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619433918.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:23 Heat of formation + Delta-G solvation = -24.492232 kcal Electronic energy + Delta-G solvation = -26014.388198 eV Core-core repulsion = 22481.436556 eV Total energy + Delta-G solvation = -3532.951642 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -40.97114 -39.81876 -38.50153 -37.03912 -35.78265 -34.89602 -33.38141 -31.47699 -31.20498 -29.80576 -27.91626 -27.36962 -25.41338 -24.34991 -23.11560 -21.88655 -20.91742 -20.72296 -19.16183 -18.47941 -17.98799 -17.17336 -17.15854 -16.40400 -16.00225 -15.78641 -15.55400 -15.29905 -15.11291 -14.82040 -14.52963 -14.23249 -14.02550 -13.96300 -13.92263 -13.61212 -13.48521 -13.22501 -13.14684 -13.03302 -12.87125 -12.81673 -12.48735 -12.42924 -12.38961 -11.79644 -11.67690 -11.62637 -11.46311 -11.42051 -11.27980 -10.91720 -10.64834 -10.37986 -10.23113 -9.51220 -9.15763 -8.00550 -6.02877 0.80898 0.87009 1.39152 1.40835 1.43423 1.47905 1.66136 1.91972 2.49664 2.51842 2.92709 3.22080 3.40658 3.78713 4.01861 4.08514 4.22248 4.28441 4.33891 4.38652 4.44090 4.54608 4.58729 4.70317 4.78448 4.84009 4.89146 4.93574 4.96670 5.03765 5.06316 5.16062 5.21158 5.27935 5.40826 5.44219 5.47447 5.56060 5.57540 5.62563 5.68686 5.82629 5.87003 5.98425 6.20902 6.42193 6.45035 6.49858 6.73022 7.06337 7.55358 7.60990 9.09300 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011080 B = 0.004201 C = 0.003791 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.392501 B = 6663.636182 C = 7383.818963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.091 4.091 3 C -0.159 4.159 4 C -0.105 4.105 5 C 0.241 3.759 6 H 0.117 0.883 7 C 0.217 3.783 8 N -0.477 5.477 9 N -0.714 5.714 10 C 0.515 3.485 11 O -0.547 6.547 12 C -0.116 4.116 13 C 0.080 3.920 14 H 0.018 0.982 15 C -0.478 4.478 16 H 0.056 0.944 17 C 0.021 3.979 18 N -0.921 5.921 19 Si 0.933 3.067 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.258 1.258 23 C -0.044 4.044 24 C -0.124 4.124 25 C -0.126 4.126 26 C -0.149 4.149 27 C -0.131 4.131 28 C -0.147 4.147 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.067 0.933 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.056 0.944 36 H 0.101 0.899 37 H 0.098 0.902 38 H 0.422 0.578 39 H 0.090 0.910 40 H 0.109 0.891 41 H 0.251 0.749 42 H 0.122 0.878 43 H 0.142 0.858 44 H 0.142 0.858 45 H 0.127 0.873 46 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.737 -4.723 -2.150 19.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.216 4.216 4 C -0.143 4.143 5 C 0.132 3.868 6 H 0.134 0.866 7 C -0.102 4.102 8 N -0.154 5.154 9 N -0.371 5.371 10 C 0.303 3.697 11 O -0.421 6.421 12 C -0.156 4.156 13 C 0.061 3.939 14 H 0.037 0.963 15 C -0.516 4.516 16 H 0.074 0.926 17 C -0.177 4.177 18 N -0.561 5.561 19 Si 0.760 3.240 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.182 1.182 23 C -0.044 4.044 24 C -0.142 4.142 25 C -0.143 4.143 26 C -0.167 4.167 27 C -0.149 4.149 28 C -0.165 4.165 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.086 0.914 32 H 0.097 0.903 33 H 0.084 0.916 34 H 0.057 0.943 35 H 0.076 0.924 36 H 0.120 0.880 37 H 0.116 0.884 38 H 0.261 0.739 39 H 0.108 0.892 40 H 0.127 0.873 41 H 0.060 0.940 42 H 0.140 0.860 43 H 0.160 0.840 44 H 0.159 0.841 45 H 0.145 0.855 46 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -17.409 -4.734 -0.375 18.045 hybrid contribution 0.728 1.231 -0.203 1.444 sum -16.682 -3.503 -0.578 17.055 Atomic orbital electron populations 1.21793 0.93324 1.02637 1.02207 1.21077 0.96819 0.95609 0.97454 1.21975 1.00355 0.96855 1.02407 1.21951 0.87553 1.04062 1.00777 1.18637 0.97820 0.94319 0.76060 0.86560 1.30507 0.92047 0.92682 0.94969 1.81141 1.10108 1.10137 1.14036 1.45944 1.17455 1.40686 1.33044 1.21170 0.80842 0.83780 0.83911 1.90787 1.51901 1.36136 1.63306 1.21695 0.99752 0.98049 0.96141 1.17645 0.91529 0.92170 0.92569 0.96325 1.21013 0.99749 0.97072 1.33792 0.92612 1.25508 0.95703 1.01034 0.95473 1.70078 1.03226 1.36412 1.46399 0.85943 0.76949 0.82612 0.78457 1.21491 1.22023 1.18203 1.20564 0.94317 0.92460 0.97086 1.21061 1.01045 0.98951 0.93143 1.21387 0.97589 0.96088 0.99279 1.21252 0.97176 1.01041 0.97233 1.21259 1.00260 0.99082 0.94269 1.21093 0.98329 0.97669 0.99406 0.92185 0.92502 0.91415 0.90306 0.91643 0.94306 0.92448 0.88038 0.88394 0.73909 0.89157 0.87314 0.94040 0.85980 0.84008 0.84061 0.85464 0.89320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 9.19 71.98 0.66 -0.69 16 2 C -0.09 -1.18 2.86 -10.79 -0.03 -1.21 16 3 C -0.16 -2.67 8.96 71.98 0.64 -2.03 16 4 C -0.10 -1.36 4.18 30.60 0.13 -1.23 16 5 C 0.24 5.44 2.28 43.19 0.10 5.54 16 6 H 0.12 3.11 5.78 -2.39 -0.01 3.10 16 7 C 0.22 6.34 14.93 89.44 1.33 7.68 16 8 N -0.48 -16.60 18.54 20.01 0.37 -16.23 16 9 N -0.71 -16.93 4.41 -451.20 -1.99 -18.93 16 10 C 0.52 18.58 7.52 87.66 0.66 19.24 16 11 O -0.55 -26.52 14.65 -3.05 -0.04 -26.57 16 12 C -0.12 -4.08 4.95 29.85 0.15 -3.93 16 13 C 0.08 3.79 1.67 -12.28 -0.02 3.77 16 14 H 0.02 1.06 6.98 -2.39 -0.02 1.05 16 15 C -0.48 -25.11 6.37 25.60 0.16 -24.95 16 16 H 0.06 2.81 7.82 -2.91 -0.02 2.79 16 17 C 0.02 1.20 5.45 84.65 0.46 1.66 16 18 N -0.92 -56.58 12.87 21.45 0.28 -56.31 16 19 Si 0.93 45.71 29.54 68.60 2.03 47.73 16 20 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 21 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 22 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 23 C -0.04 -1.89 4.77 -19.87 -0.09 -1.98 16 24 C -0.12 -4.57 8.86 22.27 0.20 -4.37 16 25 C -0.13 -3.90 10.05 22.27 0.22 -3.68 16 26 C -0.15 -4.56 10.05 22.27 0.22 -4.33 16 27 C -0.13 -4.59 10.05 22.27 0.22 -4.37 16 28 C -0.15 -6.28 9.67 22.27 0.22 -6.06 16 29 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.08 1.08 7.62 -2.39 -0.02 1.07 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 34 H 0.04 0.85 6.46 -2.39 -0.02 0.84 16 35 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 36 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 37 H 0.10 1.09 8.14 -2.38 -0.02 1.07 16 38 H 0.42 6.42 8.60 -92.70 -0.80 5.62 16 39 H 0.09 2.74 8.14 -2.39 -0.02 2.72 16 40 H 0.11 3.19 7.78 -2.39 -0.02 3.17 16 41 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 42 H 0.12 4.19 7.76 -2.91 -0.02 4.17 16 43 H 0.14 3.37 8.06 -2.91 -0.02 3.35 16 44 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 45 H 0.13 3.79 8.06 -2.91 -0.02 3.77 16 46 H 0.09 4.09 7.95 -2.91 -0.02 4.07 16 Total: -1.00 -77.13 387.50 6.05 -71.08 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: 0.18 Total: 20.16 kcal Atomic # 6 Polarization: -26.19 SS G_CDS: 5.24 Total: -20.95 kcal Atomic # 7 Polarization: -90.12 SS G_CDS: -1.34 Total: -91.46 kcal Atomic # 8 Polarization: -26.52 SS G_CDS: -0.04 Total: -26.57 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 2.03 Total: 47.73 kcal Total: -77.13 6.05 -71.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619433918.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.589 kcal (2) G-P(sol) polarization free energy of solvation -77.130 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds