Wall clock time and date at job start Tue Mar 31 2020 10:41:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39988 * 120.46339 * 6.70908 * 3 2 1 5 5 C 1.38216 * 118.37009 * 180.02562 * 4 3 2 6 6 C 1.39495 * 119.20382 * 0.02562 * 5 4 3 7 7 C 1.47990 * 119.56821 * 179.97438 * 6 5 4 8 8 O 1.21544 * 119.99621 * 353.63426 * 7 6 5 9 9 N 1.34771 * 120.00375 * 173.62957 * 7 6 5 10 10 C 1.46502 * 119.99609 * 3.91384 * 9 7 6 11 11 C 1.50699 * 109.47198 * 81.82515 * 10 9 7 12 12 H 1.07997 * 119.99875 * 4.38226 * 11 10 9 13 13 C 1.37882 * 120.00090 * 184.38126 * 11 10 9 14 14 N 1.31516 * 119.99813 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99913 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47123 * 90.00198 * 15 13 11 17 17 H 1.48498 * 109.47435 * 209.99772 * 15 13 11 18 18 H 1.48502 * 109.47615 * 330.00179 * 15 13 11 19 19 C 1.46495 * 120.00407 * 183.91135 * 9 7 6 20 20 C 1.53001 * 109.46986 * 83.62293 * 19 9 7 21 21 C 1.53001 * 109.47260 * 66.03779 * 20 19 9 22 22 C 1.53004 * 109.47184 * 65.22633 * 21 20 19 23 23 C 1.53004 * 109.47339 * 186.03833 * 20 19 9 24 24 C 1.52997 * 109.47511 * 171.77603 * 23 20 19 25 25 N 1.32817 * 120.86252 * 0.27068 * 6 5 4 26 26 C 1.31300 * 121.78630 * 359.43398 * 25 6 5 27 27 H 4.52942 * 13.94637 * 359.97438 * 4 2 1 28 28 H 1.07998 * 120.81487 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.39437 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47138 * 201.82576 * 10 9 7 31 31 H 1.08999 * 109.46963 * 321.82217 * 10 9 7 32 32 H 0.97002 * 119.99528 * 180.02562 * 14 13 11 33 33 H 1.09000 * 109.47406 * 203.61942 * 19 9 7 34 34 H 1.08999 * 109.47334 * 323.62162 * 19 9 7 35 35 H 1.09001 * 109.47264 * 306.03804 * 20 19 9 36 36 H 1.08997 * 109.47274 * 185.23024 * 21 20 19 37 37 H 1.09002 * 109.46791 * 305.22660 * 21 20 19 38 38 H 1.09003 * 109.46753 * 65.72392 * 22 21 20 39 39 H 1.08998 * 109.47156 * 185.72310 * 22 21 20 40 40 H 1.08992 * 109.46908 * 305.72324 * 22 21 20 41 41 H 1.09007 * 109.46508 * 291.77518 * 23 20 19 42 42 H 1.08998 * 109.47279 * 51.77129 * 23 20 19 43 43 H 1.08993 * 109.47188 * 65.70794 * 24 23 20 44 44 H 1.08995 * 109.47296 * 185.71422 * 24 23 20 45 45 H 1.09003 * 109.46665 * 305.71223 * 24 23 20 46 46 H 1.08001 * 119.65327 * 180.31272 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3163 -1.1974 -0.1410 5 6 4.6975 -1.1467 -0.1345 6 6 5.3327 0.0866 0.0116 7 6 6.8112 0.1502 0.0202 8 8 7.4635 -0.8754 0.0170 9 7 7.4343 1.3451 0.0314 10 6 6.6501 2.5793 0.1216 11 6 6.2883 2.8404 1.5610 12 1 6.6691 2.1955 2.3391 13 6 5.4710 3.9027 1.8847 14 7 5.1549 4.1302 3.1409 15 14 4.8129 5.0186 0.5390 16 1 3.5144 4.4903 0.0488 17 1 4.6172 6.3868 1.0821 18 1 5.7837 5.0659 -0.5838 19 6 8.8957 1.4100 -0.0467 20 6 9.3324 1.3271 -1.5107 21 6 8.8540 2.5741 -2.2571 22 6 9.5648 3.8078 -1.6970 23 6 10.8584 1.2431 -1.5839 24 6 11.2849 0.9549 -3.0246 25 7 4.6278 1.2039 0.1490 26 6 3.3148 1.1986 0.1424 27 1 -1.0500 -0.0010 0.0004 28 1 2.7977 -2.1382 -0.2520 29 1 5.2780 -2.0511 -0.2414 30 1 7.2387 3.4127 -0.2620 31 1 5.7398 2.4753 -0.4688 32 1 4.5796 4.8774 3.3685 33 1 9.2412 2.3504 0.3827 34 1 9.3266 0.5769 0.5087 35 1 8.8973 0.4395 -1.9700 36 1 9.0832 2.4729 -3.3179 37 1 7.7774 2.6846 -2.1269 38 1 10.6304 3.7445 -1.9175 39 1 9.1513 4.7054 -2.1568 40 1 9.4191 3.8523 -0.6178 41 1 11.2903 2.1900 -1.2595 42 1 11.2098 0.4419 -0.9337 43 1 11.0231 1.8027 -3.6576 44 1 12.3624 0.7945 -3.0594 45 1 10.7729 0.0619 -3.3834 46 1 2.7762 2.1283 0.2518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000729432534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:02 Heat of formation + Delta-G solvation = 61.963214 kcal Electronic energy + Delta-G solvation = -26878.587740 eV Core-core repulsion = 23349.385087 eV Total energy + Delta-G solvation = -3529.202653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -40.33794 -38.84148 -37.09021 -34.84106 -33.98781 -32.31056 -31.88443 -30.97501 -30.47656 -28.84658 -27.15973 -25.09522 -23.82662 -23.29393 -22.81683 -22.36854 -19.61219 -18.97591 -18.61245 -16.96490 -16.65382 -16.48005 -15.58960 -15.36516 -15.08322 -15.01983 -14.56058 -14.32917 -13.87014 -13.65402 -13.23484 -13.14263 -13.05793 -12.81228 -12.53446 -12.42949 -12.10184 -11.83690 -11.63434 -11.52723 -11.41915 -11.23613 -11.01680 -10.81321 -10.74468 -10.58552 -10.35598 -10.14580 -10.11976 -10.03780 -9.62833 -9.53630 -9.35832 -8.61870 -8.53686 -8.33093 -7.64019 -6.03752 -3.97007 0.68320 1.54832 2.72112 2.85863 3.25883 3.34787 3.36473 3.57992 3.72138 4.21652 4.36818 4.42540 4.72497 4.97414 5.02284 5.06422 5.15616 5.17552 5.31935 5.37016 5.41501 5.46328 5.52476 5.60333 5.80359 5.86955 5.88822 5.96033 6.02771 6.04905 6.07147 6.11784 6.21271 6.26102 6.29552 6.33105 6.43280 6.51150 6.54894 6.64731 6.77793 6.80631 7.18935 7.47394 7.49840 7.68951 8.13215 8.24545 8.55039 8.85863 9.01097 9.58517 11.09906 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.005427 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.464937 B = 5158.117162 C = 6718.598505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.138 4.138 3 C -0.036 4.036 4 C -0.071 4.071 5 C -0.119 4.119 6 C 0.095 3.905 7 C 0.567 3.433 8 O -0.564 6.564 9 N -0.564 5.564 10 C 0.196 3.804 11 C -0.498 4.498 12 H 0.069 0.931 13 C 0.078 3.922 14 N -0.901 5.901 15 Si 0.870 3.130 16 H -0.275 1.275 17 H -0.291 1.291 18 H -0.266 1.266 19 C 0.120 3.880 20 C -0.101 4.101 21 C -0.120 4.120 22 C -0.157 4.157 23 C -0.120 4.120 24 C -0.149 4.149 25 N -0.387 5.387 26 C 0.118 3.882 27 H 0.224 0.776 28 H 0.138 0.862 29 H 0.147 0.853 30 H 0.026 0.974 31 H 0.073 0.927 32 H 0.262 0.738 33 H 0.084 0.916 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.055 0.945 37 H 0.067 0.933 38 H 0.053 0.947 39 H 0.048 0.952 40 H 0.064 0.936 41 H 0.067 0.933 42 H 0.061 0.939 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.051 0.949 46 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.182 -5.792 -10.988 12.423 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.138 4.138 3 C -0.038 4.038 4 C -0.096 4.096 5 C -0.140 4.140 6 C -0.043 4.043 7 C 0.354 3.646 8 O -0.445 6.445 9 N -0.292 5.292 10 C 0.075 3.925 11 C -0.537 4.537 12 H 0.087 0.913 13 C -0.123 4.123 14 N -0.541 5.541 15 Si 0.698 3.302 16 H -0.201 1.201 17 H -0.217 1.217 18 H -0.191 1.191 19 C -0.003 4.003 20 C -0.121 4.121 21 C -0.158 4.158 22 C -0.214 4.214 23 C -0.158 4.158 24 C -0.206 4.206 25 N -0.097 5.097 26 C -0.041 4.041 27 H 0.241 0.759 28 H 0.156 0.844 29 H 0.164 0.836 30 H 0.044 0.956 31 H 0.090 0.910 32 H 0.072 0.928 33 H 0.102 0.898 34 H 0.091 0.909 35 H 0.089 0.911 36 H 0.073 0.927 37 H 0.086 0.914 38 H 0.072 0.928 39 H 0.067 0.933 40 H 0.083 0.917 41 H 0.086 0.914 42 H 0.079 0.921 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.070 0.930 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 0.941 -5.371 -10.768 12.070 hybrid contribution -1.300 0.042 -0.432 1.371 sum -0.360 -5.329 -11.200 12.408 Atomic orbital electron populations 1.24813 0.95641 0.99538 0.99680 1.19857 0.91725 1.01164 1.01085 1.17232 0.87692 0.95435 1.03490 1.21459 0.93512 0.97347 0.97290 1.21948 0.94262 0.99013 0.98787 1.21397 0.95032 0.89561 0.98307 1.17764 0.85789 0.83727 0.77302 1.90691 1.66121 1.34281 1.53379 1.47886 1.06367 1.07285 1.67613 1.20556 0.92088 0.80520 0.99300 1.21178 1.29080 1.12545 0.90870 0.91279 1.24706 0.95600 0.97201 0.94818 1.69910 1.37087 1.30201 1.16873 0.86978 0.80176 0.80165 0.82916 1.20056 1.21720 1.19064 1.21528 0.80488 1.02928 0.95401 1.21579 0.95285 0.98570 0.96647 1.21563 1.01031 0.94435 0.98746 1.21911 0.99868 0.97414 1.02162 1.21566 0.95252 1.01958 0.96984 1.21760 1.00369 1.01438 0.97023 1.68662 1.06481 1.27635 1.06918 1.23242 0.90185 0.96753 0.93955 0.75887 0.84443 0.83551 0.95635 0.91034 0.92842 0.89784 0.90941 0.91088 0.92659 0.91429 0.92849 0.93253 0.91692 0.91397 0.92058 0.92793 0.93225 0.92951 0.82395 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.07 19.25 29.55 0.57 -1.50 16 2 C -0.14 -1.98 13.28 -38.84 -0.52 -2.50 16 3 C -0.04 -0.58 5.75 -106.68 -0.61 -1.19 16 4 C -0.07 -1.03 9.89 -38.93 -0.39 -1.41 16 5 C -0.12 -1.96 9.61 -39.12 -0.38 -2.34 16 6 C 0.09 1.89 6.62 -82.98 -0.55 1.34 16 7 C 0.57 12.00 7.51 -12.27 -0.09 11.91 16 8 O -0.56 -12.36 15.99 5.33 0.09 -12.28 16 9 N -0.56 -11.66 2.22 -176.12 -0.39 -12.05 16 10 C 0.20 4.40 2.69 -5.19 -0.01 4.39 16 11 C -0.50 -13.26 8.47 -34.44 -0.29 -13.56 16 12 H 0.07 2.10 8.06 -52.49 -0.42 1.68 16 13 C 0.08 2.13 5.47 -17.82 -0.10 2.04 16 14 N -0.90 -26.62 13.96 55.43 0.77 -25.85 16 15 Si 0.87 20.43 27.38 -169.99 -4.65 15.78 16 16 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 17 H -0.29 -6.94 7.11 56.52 0.40 -6.53 16 18 H -0.27 -5.94 6.67 56.52 0.38 -5.56 16 19 C 0.12 2.12 4.65 -4.04 -0.02 2.10 16 20 C -0.10 -1.50 2.29 -90.62 -0.21 -1.71 16 21 C -0.12 -1.74 4.96 -26.73 -0.13 -1.87 16 22 C -0.16 -2.14 8.73 37.16 0.32 -1.81 16 23 C -0.12 -1.47 5.14 -26.73 -0.14 -1.61 16 24 C -0.15 -1.60 9.60 37.16 0.36 -1.24 16 25 N -0.39 -8.08 4.92 -9.49 -0.05 -8.12 16 26 C 0.12 2.20 10.92 -17.15 -0.19 2.02 16 27 H 0.22 1.58 7.80 -54.09 -0.42 1.16 16 28 H 0.14 1.55 8.06 -52.49 -0.42 1.13 16 29 H 0.15 2.19 7.64 -52.49 -0.40 1.79 16 30 H 0.03 0.57 5.50 -51.93 -0.29 0.28 16 31 H 0.07 1.63 4.44 -52.34 -0.23 1.40 16 32 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 33 H 0.08 1.47 6.07 -51.93 -0.32 1.15 16 34 H 0.07 1.32 7.54 -51.93 -0.39 0.93 16 35 H 0.07 1.16 8.11 -51.93 -0.42 0.74 16 36 H 0.05 0.71 7.05 -51.93 -0.37 0.35 16 37 H 0.07 1.12 6.10 -51.93 -0.32 0.80 16 38 H 0.05 0.63 6.51 -51.93 -0.34 0.29 16 39 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.06 0.98 5.76 -51.93 -0.30 0.68 16 41 H 0.07 0.79 6.01 -51.92 -0.31 0.48 16 42 H 0.06 0.76 8.11 -51.93 -0.42 0.33 16 43 H 0.05 0.56 7.07 -51.93 -0.37 0.19 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.05 0.58 8.12 -51.93 -0.42 0.15 16 46 H 0.16 2.89 8.06 -52.49 -0.42 2.46 16 LS Contribution 370.78 15.07 5.59 5.59 Total: -1.00 -30.91 370.78 -7.60 -38.51 By element: Atomic # 1 Polarization: 11.96 SS G_CDS: -6.58 Total: 5.38 kcal Atomic # 6 Polarization: -4.59 SS G_CDS: -2.37 Total: -6.96 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.34 Total: -46.02 kcal Atomic # 8 Polarization: -12.36 SS G_CDS: 0.09 Total: -12.28 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.65 Total: 15.78 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -30.91 -7.60 -38.51 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729432534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.478 kcal (2) G-P(sol) polarization free energy of solvation -30.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.515 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.963 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds