Wall clock time and date at job start Tue Mar 31 2020 10:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.43202 * 179.97438 * 2 1 4 4 C 1.39988 * 120.46339 * 6.70908 * 3 2 1 5 5 C 1.38216 * 118.37009 * 180.02562 * 4 3 2 6 6 C 1.39495 * 119.20382 * 0.02562 * 5 4 3 7 7 C 1.47990 * 119.56821 * 179.97438 * 6 5 4 8 8 O 1.21544 * 119.99621 * 353.63426 * 7 6 5 9 9 N 1.34771 * 120.00375 * 173.62957 * 7 6 5 10 10 C 1.46502 * 119.99609 * 3.91384 * 9 7 6 11 11 C 1.50699 * 109.47198 * 81.82515 * 10 9 7 12 12 H 1.07997 * 119.99875 * 4.38226 * 11 10 9 13 13 C 1.37882 * 120.00090 * 184.38126 * 11 10 9 14 14 N 1.31516 * 119.99813 * 179.97438 * 13 11 10 15 15 Si 1.86793 * 119.99913 * 359.97438 * 13 11 10 16 16 H 1.48507 * 109.47123 * 90.00198 * 15 13 11 17 17 H 1.48498 * 109.47435 * 209.99772 * 15 13 11 18 18 H 1.48502 * 109.47615 * 330.00179 * 15 13 11 19 19 C 1.46495 * 120.00407 * 183.91135 * 9 7 6 20 20 C 1.53001 * 109.46986 * 83.62293 * 19 9 7 21 21 C 1.53001 * 109.47260 * 66.03779 * 20 19 9 22 22 C 1.53004 * 109.47184 * 65.22633 * 21 20 19 23 23 C 1.53004 * 109.47339 * 186.03833 * 20 19 9 24 24 C 1.52997 * 109.47511 * 171.77603 * 23 20 19 25 25 N 1.32817 * 120.86252 * 0.27068 * 6 5 4 26 26 C 1.31300 * 121.78630 * 359.43398 * 25 6 5 27 27 H 4.52942 * 13.94637 * 359.97438 * 4 2 1 28 28 H 1.07998 * 120.81487 * 0.02562 * 4 3 2 29 29 H 1.07997 * 120.39437 * 180.02562 * 5 4 3 30 30 H 1.09003 * 109.47138 * 201.82576 * 10 9 7 31 31 H 1.08999 * 109.46963 * 321.82217 * 10 9 7 32 32 H 0.97002 * 119.99528 * 180.02562 * 14 13 11 33 33 H 1.09000 * 109.47406 * 203.61942 * 19 9 7 34 34 H 1.08999 * 109.47334 * 323.62162 * 19 9 7 35 35 H 1.09001 * 109.47264 * 306.03804 * 20 19 9 36 36 H 1.08997 * 109.47274 * 185.23024 * 21 20 19 37 37 H 1.09002 * 109.46791 * 305.22660 * 21 20 19 38 38 H 1.09003 * 109.46753 * 65.72392 * 22 21 20 39 39 H 1.08998 * 109.47156 * 185.72310 * 22 21 20 40 40 H 1.08992 * 109.46908 * 305.72324 * 22 21 20 41 41 H 1.09007 * 109.46508 * 291.77518 * 23 20 19 42 42 H 1.08998 * 109.47279 * 51.77129 * 23 20 19 43 43 H 1.08993 * 109.47188 * 65.70794 * 24 23 20 44 44 H 1.08995 * 109.47296 * 185.71422 * 24 23 20 45 45 H 1.09003 * 109.46665 * 305.71223 * 24 23 20 46 46 H 1.08001 * 119.65327 * 180.31272 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6060 0.0006 0.0000 4 6 3.3163 -1.1974 -0.1410 5 6 4.6975 -1.1467 -0.1345 6 6 5.3327 0.0866 0.0116 7 6 6.8112 0.1502 0.0202 8 8 7.4635 -0.8754 0.0170 9 7 7.4343 1.3451 0.0314 10 6 6.6501 2.5793 0.1216 11 6 6.2883 2.8404 1.5610 12 1 6.6691 2.1955 2.3391 13 6 5.4710 3.9027 1.8847 14 7 5.1549 4.1302 3.1409 15 14 4.8129 5.0186 0.5390 16 1 3.5144 4.4903 0.0488 17 1 4.6172 6.3868 1.0821 18 1 5.7837 5.0659 -0.5838 19 6 8.8957 1.4100 -0.0467 20 6 9.3324 1.3271 -1.5107 21 6 8.8540 2.5741 -2.2571 22 6 9.5648 3.8078 -1.6970 23 6 10.8584 1.2431 -1.5839 24 6 11.2849 0.9549 -3.0246 25 7 4.6278 1.2039 0.1490 26 6 3.3148 1.1986 0.1424 27 1 -1.0500 -0.0010 0.0004 28 1 2.7977 -2.1382 -0.2520 29 1 5.2780 -2.0511 -0.2414 30 1 7.2387 3.4127 -0.2620 31 1 5.7398 2.4753 -0.4688 32 1 4.5796 4.8774 3.3685 33 1 9.2412 2.3504 0.3827 34 1 9.3266 0.5769 0.5087 35 1 8.8973 0.4395 -1.9700 36 1 9.0832 2.4729 -3.3179 37 1 7.7774 2.6846 -2.1269 38 1 10.6304 3.7445 -1.9175 39 1 9.1513 4.7054 -2.1568 40 1 9.4191 3.8523 -0.6178 41 1 11.2903 2.1900 -1.2595 42 1 11.2098 0.4419 -0.9337 43 1 11.0231 1.8027 -3.6576 44 1 12.3624 0.7945 -3.0594 45 1 10.7729 0.0619 -3.3834 46 1 2.7762 2.1283 0.2518 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000729432534.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:41:01 Heat of formation + Delta-G solvation = 45.720211 kcal Electronic energy + Delta-G solvation = -26879.292089 eV Core-core repulsion = 23349.385087 eV Total energy + Delta-G solvation = -3529.907002 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.80325 -40.27711 -38.44372 -36.43019 -35.18123 -34.33820 -33.19356 -32.02690 -31.72953 -30.45474 -28.77779 -26.39643 -25.15891 -24.60884 -24.22674 -23.94315 -21.04506 -20.07561 -19.87465 -19.02093 -18.25133 -17.95813 -16.72609 -16.61795 -16.55235 -16.44616 -16.11172 -15.77611 -15.45637 -14.99363 -14.69915 -14.56259 -14.41002 -14.22486 -13.86028 -13.70602 -13.57182 -13.17019 -13.04747 -12.75112 -12.61105 -12.58436 -12.54024 -12.32522 -12.07365 -11.91893 -11.75998 -11.62488 -11.46853 -11.30543 -11.24763 -11.08813 -10.85546 -10.61430 -9.92544 -9.81046 -9.31610 -8.17696 -6.15822 -0.64175 0.25169 1.39320 1.40754 1.50127 1.50618 1.71980 2.17449 2.28886 2.42653 2.95341 3.14350 3.22366 3.35359 3.65811 3.81082 3.91038 3.92815 4.01772 4.05988 4.21391 4.36505 4.43181 4.55713 4.60143 4.66102 4.70447 4.78023 4.83377 4.84822 4.93297 4.96148 5.00978 5.07616 5.10351 5.12350 5.25646 5.32311 5.34985 5.40273 5.46675 5.57116 5.62316 5.65783 5.83823 6.26371 6.50564 6.57027 6.78408 6.85283 7.23161 7.45293 9.00041 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.011373 B = 0.005427 C = 0.004167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2461.464937 B = 5158.117162 C = 6718.598505 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.207 4.207 3 C -0.018 4.018 4 C -0.059 4.059 5 C -0.109 4.109 6 C 0.058 3.942 7 C 0.560 3.440 8 O -0.580 6.580 9 N -0.570 5.570 10 C 0.212 3.788 11 C -0.490 4.490 12 H 0.015 0.985 13 C 0.029 3.971 14 N -0.953 5.953 15 Si 0.928 3.072 16 H -0.258 1.258 17 H -0.293 1.293 18 H -0.246 1.246 19 C 0.115 3.885 20 C -0.090 4.090 21 C -0.117 4.117 22 C -0.154 4.154 23 C -0.116 4.116 24 C -0.144 4.144 25 N -0.419 5.419 26 C 0.093 3.907 27 H 0.269 0.731 28 H 0.179 0.821 29 H 0.161 0.839 30 H 0.033 0.967 31 H 0.079 0.921 32 H 0.262 0.738 33 H 0.082 0.918 34 H 0.060 0.940 35 H 0.055 0.945 36 H 0.076 0.924 37 H 0.043 0.957 38 H 0.076 0.924 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.078 0.922 42 H 0.057 0.943 43 H 0.061 0.939 44 H 0.065 0.935 45 H 0.046 0.954 46 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.366 -6.272 -13.576 15.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.208 4.208 3 C -0.020 4.020 4 C -0.084 4.084 5 C -0.130 4.130 6 C -0.079 4.079 7 C 0.348 3.652 8 O -0.463 6.463 9 N -0.297 5.297 10 C 0.091 3.909 11 C -0.529 4.529 12 H 0.033 0.967 13 C -0.168 4.168 14 N -0.595 5.595 15 Si 0.752 3.248 16 H -0.183 1.183 17 H -0.219 1.219 18 H -0.169 1.169 19 C -0.007 4.007 20 C -0.109 4.109 21 C -0.155 4.155 22 C -0.211 4.211 23 C -0.154 4.154 24 C -0.202 4.202 25 N -0.129 5.129 26 C -0.067 4.067 27 H 0.285 0.715 28 H 0.197 0.803 29 H 0.178 0.822 30 H 0.050 0.950 31 H 0.096 0.904 32 H 0.071 0.929 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.095 0.905 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.096 0.904 42 H 0.076 0.924 43 H 0.080 0.920 44 H 0.084 0.916 45 H 0.065 0.935 46 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.581 -5.865 -13.376 14.617 hybrid contribution -0.976 0.049 0.453 1.077 sum -1.557 -5.816 -12.924 14.257 Atomic orbital electron populations 1.25879 0.96302 0.95950 0.95236 1.19919 0.91888 1.04501 1.04501 1.17329 0.89149 0.94770 1.00786 1.21876 0.92568 0.98550 0.95432 1.22136 0.95349 0.98118 0.97388 1.21357 0.94299 0.90895 1.01379 1.18125 0.86757 0.83559 0.76802 1.90650 1.66768 1.34504 1.54333 1.47917 1.07406 1.06739 1.67657 1.20264 0.92720 0.81443 0.96476 1.21206 1.28537 1.11422 0.91754 0.96710 1.25442 0.95743 0.98713 0.96916 1.70071 1.38671 1.31346 1.19413 0.86022 0.80656 0.77640 0.80455 1.18292 1.21909 1.16924 1.21701 0.79063 1.02283 0.97668 1.21462 0.97144 0.98263 0.94079 1.21532 0.99559 0.94415 0.99957 1.21891 1.01328 0.97151 1.00713 1.21552 0.92971 1.02453 0.98409 1.21729 1.01374 1.01520 0.95551 1.68366 1.07802 1.28803 1.07972 1.23252 0.89719 0.97967 0.95780 0.71460 0.80339 0.82152 0.94951 0.90420 0.92898 0.89956 0.92110 0.92682 0.90536 0.93860 0.90535 0.92693 0.93736 0.90398 0.92395 0.92026 0.91565 0.93452 0.82887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.18 19.25 74.32 1.43 -0.75 16 2 C -0.21 -5.43 13.28 30.02 0.40 -5.03 16 3 C -0.02 -0.56 5.75 -21.20 -0.12 -0.68 16 4 C -0.06 -1.62 9.89 22.69 0.22 -1.39 16 5 C -0.11 -3.56 9.61 22.57 0.22 -3.35 16 6 C 0.06 2.38 6.62 41.89 0.28 2.65 16 7 C 0.56 24.78 7.51 86.83 0.65 25.43 16 8 O -0.58 -26.42 15.99 -3.86 -0.06 -26.48 16 9 N -0.57 -24.72 2.22 -829.41 -1.84 -26.56 16 10 C 0.21 9.88 2.69 85.63 0.23 10.11 16 11 C -0.49 -27.54 8.47 25.60 0.22 -27.32 16 12 H 0.01 0.96 8.06 -2.91 -0.02 0.94 16 13 C 0.03 1.62 5.47 84.66 0.46 2.08 16 14 N -0.95 -58.83 13.96 21.45 0.30 -58.53 16 15 Si 0.93 42.58 27.38 68.60 1.88 44.46 16 16 H -0.26 -11.09 7.11 99.48 0.71 -10.38 16 17 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 18 H -0.25 -10.38 6.67 99.48 0.66 -9.71 16 19 C 0.12 4.26 4.65 86.38 0.40 4.67 16 20 C -0.09 -2.68 2.29 -10.79 -0.02 -2.70 16 21 C -0.12 -3.28 4.96 30.60 0.15 -3.13 16 22 C -0.15 -3.99 8.73 71.98 0.63 -3.36 16 23 C -0.12 -2.72 5.14 30.59 0.16 -2.57 16 24 C -0.14 -2.80 9.60 71.98 0.69 -2.11 16 25 N -0.42 -18.07 4.92 -183.93 -0.91 -18.98 16 26 C 0.09 3.52 10.92 85.18 0.93 4.45 16 27 H 0.27 2.07 7.80 -4.42 -0.03 2.04 16 28 H 0.18 3.36 8.06 -2.91 -0.02 3.34 16 29 H 0.16 4.68 7.64 -2.91 -0.02 4.66 16 30 H 0.03 1.46 5.50 -2.39 -0.01 1.45 16 31 H 0.08 3.62 4.44 -3.19 -0.01 3.60 16 32 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 33 H 0.08 3.02 6.07 -2.39 -0.01 3.01 16 34 H 0.06 2.35 7.54 -2.39 -0.02 2.33 16 35 H 0.05 1.82 8.11 -2.39 -0.02 1.80 16 36 H 0.08 1.82 7.05 -2.39 -0.02 1.80 16 37 H 0.04 1.42 6.10 -2.39 -0.01 1.41 16 38 H 0.08 1.61 6.51 -2.39 -0.02 1.60 16 39 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.04 1.33 5.76 -2.39 -0.01 1.32 16 41 H 0.08 1.68 6.01 -2.38 -0.01 1.66 16 42 H 0.06 1.40 8.11 -2.39 -0.02 1.38 16 43 H 0.06 1.10 7.07 -2.39 -0.02 1.09 16 44 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 45 H 0.05 0.96 8.12 -2.39 -0.02 0.94 16 46 H 0.15 5.73 8.06 -2.91 -0.02 5.70 16 Total: -1.00 -72.24 370.78 7.22 -65.02 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: 0.93 Total: 24.08 kcal Atomic # 6 Polarization: -9.92 SS G_CDS: 6.92 Total: -3.00 kcal Atomic # 7 Polarization: -101.63 SS G_CDS: -2.45 Total: -104.08 kcal Atomic # 8 Polarization: -26.42 SS G_CDS: -0.06 Total: -26.48 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 1.88 Total: 44.46 kcal Total: -72.24 7.22 -65.02 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000729432534.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.741 kcal (2) G-P(sol) polarization free energy of solvation -72.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.021 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds