Wall clock time and date at job start Tue Mar 31 2020 11:30:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47386 * 2 1 4 4 C 1.53002 * 109.46635 * 120.00283 * 2 1 3 5 5 N 1.46905 * 109.46574 * 178.62548 * 4 2 1 6 6 C 1.46896 * 111.00004 * 156.11281 * 5 4 2 7 7 C 1.50708 * 109.47315 * 287.80495 * 6 5 4 8 8 H 1.07998 * 119.99154 * 4.92460 * 7 6 5 9 9 C 1.37871 * 120.00351 * 184.93129 * 7 6 5 10 10 N 1.31514 * 119.99810 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99967 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46385 * 90.00871 * 11 9 7 13 13 H 1.48500 * 109.46958 * 210.00375 * 11 9 7 14 14 H 1.48494 * 109.47525 * 330.00910 * 11 9 7 15 15 C 1.46899 * 111.00036 * 280.06400 * 5 4 2 16 16 C 1.50693 * 109.47342 * 80.03632 * 15 5 4 17 17 C 1.35231 * 126.65955 * 77.88043 * 16 15 5 18 18 C 1.42287 * 103.93304 * 179.97438 * 17 16 15 19 19 C 1.48445 * 126.93275 * 179.97438 * 18 17 16 20 20 C 1.39320 * 120.11643 * 180.02562 * 19 18 17 21 21 C 1.38017 * 119.88209 * 179.97438 * 20 19 18 22 22 C 1.38329 * 120.11705 * 359.97438 * 21 20 19 23 23 C 1.38319 * 120.23630 * 0.25649 * 22 21 20 24 24 C 1.38018 * 120.12161 * 359.49191 * 23 22 21 25 25 N 1.30984 * 106.12701 * 0.24094 * 18 17 16 26 26 O 1.20905 * 111.42731 * 359.57146 * 25 18 17 27 27 H 1.08995 * 109.47108 * 299.99943 * 1 2 3 28 28 H 1.09007 * 109.46854 * 60.00092 * 1 2 3 29 29 H 1.08997 * 109.47541 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46601 * 239.99420 * 2 1 3 31 31 H 1.08999 * 109.47452 * 184.85527 * 3 2 1 32 32 H 1.09002 * 109.46929 * 304.85219 * 3 2 1 33 33 H 1.09005 * 109.47427 * 64.85427 * 3 2 1 34 34 H 1.08998 * 109.47765 * 58.62996 * 4 2 1 35 35 H 1.08995 * 109.47424 * 298.61809 * 4 2 1 36 36 H 1.09000 * 109.47255 * 47.79863 * 6 5 4 37 37 H 1.08997 * 109.47454 * 167.80635 * 6 5 4 38 38 H 0.97007 * 119.99764 * 179.97438 * 10 9 7 39 39 H 1.09008 * 109.46973 * 320.03595 * 15 5 4 40 40 H 1.09004 * 109.47262 * 200.04063 * 15 5 4 41 41 H 1.07992 * 128.03310 * 359.95020 * 17 16 15 42 42 H 1.08003 * 120.06029 * 359.94918 * 20 19 18 43 43 H 1.07996 * 119.94413 * 180.02562 * 21 20 19 44 44 H 1.07994 * 119.88082 * 179.97438 * 22 21 20 45 45 H 1.08000 * 119.93907 * 179.74406 * 23 22 21 46 46 H 1.08005 * 120.06021 * 180.24817 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5086 -0.7502 1.2327 6 6 4.0475 -0.8958 2.5915 7 6 3.8557 0.3929 3.3489 8 1 3.3108 1.2086 2.8972 9 6 4.3760 0.5306 4.6182 10 7 4.2081 1.6550 5.2793 11 14 5.3181 -0.8806 5.3996 12 1 6.7596 -0.7588 5.0645 13 1 5.1469 -0.8337 6.8740 14 1 4.7967 -2.1709 4.8815 15 6 4.0043 -1.8168 0.3527 16 6 3.9479 -1.3528 -1.0800 17 6 4.8171 -0.5178 -1.6931 18 6 4.3125 -0.4114 -3.0192 19 6 4.8861 0.3886 -4.1303 20 6 4.2711 0.3903 -5.3805 21 6 4.8083 1.1363 -6.4100 22 6 5.9548 1.8817 -6.2021 23 6 6.5720 1.8798 -4.9643 24 6 6.0404 1.1415 -3.9264 25 7 3.2364 -1.1571 -3.0600 26 8 3.0264 -1.6882 -1.9943 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8900 31 1 3.1266 1.4436 -0.0870 32 1 1.6075 1.9807 -0.8434 33 1 1.7495 1.9306 0.9303 34 1 1.6567 -1.7417 1.2617 35 1 1.6969 -0.1935 2.1391 36 1 3.5231 -1.7010 3.1060 37 1 5.1105 -1.1307 2.5375 38 1 4.5738 1.7518 6.1725 39 1 3.3829 -2.7044 0.4719 40 1 5.0344 -2.0563 0.6167 41 1 5.6911 -0.0420 -1.2736 42 1 3.3759 -0.1913 -5.5438 43 1 4.3322 1.1387 -7.3793 44 1 6.3721 2.4637 -7.0105 45 1 7.4693 2.4603 -4.8085 46 1 6.5209 1.1439 -2.9591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000739913974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:15 Heat of formation + Delta-G solvation = 85.826930 kcal Electronic energy + Delta-G solvation = -26261.436288 eV Core-core repulsion = 22733.268444 eV Total energy + Delta-G solvation = -3528.167845 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.73079 -39.20889 -37.81618 -34.42703 -34.11879 -32.86649 -31.76626 -31.07477 -30.34192 -28.07716 -26.65640 -26.41844 -24.11165 -24.02164 -22.93404 -21.89268 -20.73980 -20.03802 -19.57170 -17.52792 -17.31480 -16.75362 -16.47875 -15.71038 -15.31418 -14.90129 -14.60632 -14.44015 -14.00805 -13.75445 -13.61104 -13.46311 -13.31258 -13.12795 -12.76921 -12.61203 -12.41502 -12.04802 -11.75713 -11.58649 -11.48114 -11.40500 -11.14688 -10.95773 -10.84044 -10.78475 -10.61676 -10.42688 -10.12329 -9.98886 -9.90755 -9.37828 -9.12641 -9.10692 -8.61891 -8.55589 -7.57317 -6.09455 -4.07203 0.77664 1.23086 1.75976 2.58348 3.22933 3.24325 3.31979 3.32681 3.75656 4.04652 4.36739 4.46328 4.68607 4.78730 4.87068 4.92765 5.20857 5.22566 5.23082 5.34299 5.37526 5.40553 5.48362 5.54501 5.66234 5.69644 5.80358 5.85098 5.90104 5.96157 6.11289 6.13690 6.22342 6.31116 6.32772 6.35364 6.39550 6.41247 6.46425 6.60306 6.68500 6.76539 6.84458 6.91447 7.04293 7.49225 7.76505 7.87203 8.39810 8.58038 9.01273 9.51363 11.03503 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.003538 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.215978 B = 7912.723476 C = 8613.011842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.099 4.099 3 C -0.129 4.129 4 C 0.064 3.936 5 N -0.518 5.518 6 C 0.165 3.835 7 C -0.507 4.507 8 H 0.083 0.917 9 C 0.070 3.930 10 N -0.898 5.898 11 Si 0.873 3.127 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.123 3.877 16 C 0.003 3.997 17 C -0.206 4.206 18 C 0.051 3.949 19 C -0.012 4.012 20 C -0.096 4.096 21 C -0.122 4.122 22 C -0.115 4.115 23 C -0.120 4.120 24 C -0.093 4.093 25 N -0.363 5.363 26 O 0.099 5.901 27 H 0.054 0.946 28 H 0.048 0.952 29 H 0.048 0.952 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.054 0.946 34 H 0.025 0.975 35 H 0.090 0.910 36 H -0.008 1.008 37 H 0.026 0.974 38 H 0.264 0.736 39 H 0.053 0.947 40 H 0.102 0.898 41 H 0.172 0.828 42 H 0.127 0.873 43 H 0.124 0.876 44 H 0.123 0.877 45 H 0.127 0.873 46 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.456 -3.854 -18.875 19.320 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.118 4.118 3 C -0.186 4.186 4 C -0.064 4.064 5 N -0.242 5.242 6 C 0.040 3.960 7 C -0.546 4.546 8 H 0.101 0.899 9 C -0.132 4.132 10 N -0.537 5.537 11 Si 0.700 3.300 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.193 1.193 15 C -0.006 4.006 16 C -0.060 4.060 17 C -0.228 4.228 18 C -0.105 4.105 19 C -0.013 4.013 20 C -0.115 4.115 21 C -0.140 4.140 22 C -0.134 4.134 23 C -0.138 4.138 24 C -0.113 4.113 25 N -0.066 5.066 26 O 0.031 5.969 27 H 0.074 0.926 28 H 0.067 0.933 29 H 0.067 0.933 30 H 0.084 0.916 31 H 0.084 0.916 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.043 0.957 35 H 0.108 0.892 36 H 0.010 0.990 37 H 0.044 0.956 38 H 0.074 0.926 39 H 0.071 0.929 40 H 0.120 0.880 41 H 0.189 0.811 42 H 0.145 0.855 43 H 0.142 0.858 44 H 0.141 0.859 45 H 0.145 0.855 46 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.746 -3.638 -19.789 20.135 hybrid contribution 0.903 -1.022 1.320 1.898 sum 1.650 -4.661 -18.470 19.120 Atomic orbital electron populations 1.21784 0.96000 1.00971 1.01333 1.21263 0.94469 0.97563 0.98511 1.21616 1.02034 0.94783 1.00216 1.22246 0.87094 0.98024 0.98988 1.61802 1.08138 1.42382 1.11899 1.20234 0.94372 0.97778 0.83658 1.20988 1.35557 0.99057 0.98971 0.89856 1.24879 0.95965 0.95400 0.96967 1.69887 1.46016 1.25036 1.12739 0.86912 0.80828 0.83406 0.78866 1.20170 1.21236 1.19293 1.20658 1.02461 0.93538 0.83958 1.24441 0.89154 0.98278 0.94103 1.22333 1.04531 1.03671 0.92294 1.21904 0.94082 0.99835 0.94663 1.17749 0.95514 0.97003 0.91037 1.21228 0.99635 0.98630 0.91998 1.21084 0.96588 0.97431 0.98944 1.21250 0.95837 0.98973 0.97345 1.21092 1.00257 0.99451 0.92982 1.21202 0.94760 0.95680 0.99655 1.74042 1.17282 1.11857 1.03451 1.84779 1.43528 1.53932 1.14637 0.92643 0.93310 0.93310 0.91630 0.91607 0.94983 0.92659 0.95653 0.89151 0.99027 0.95605 0.92627 0.92868 0.87976 0.81075 0.85540 0.85776 0.85919 0.85502 0.85213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.19 37.16 0.34 -1.74 16 2 C -0.10 -1.64 2.69 -90.62 -0.24 -1.89 16 3 C -0.13 -2.29 8.98 37.15 0.33 -1.96 16 4 C 0.06 1.16 4.25 -3.82 -0.02 1.15 16 5 N -0.52 -9.77 3.71 -237.51 -0.88 -10.65 16 6 C 0.17 3.64 3.77 -4.97 -0.02 3.62 16 7 C -0.51 -13.52 8.95 -34.44 -0.31 -13.83 16 8 H 0.08 2.44 7.86 -52.49 -0.41 2.03 16 9 C 0.07 1.92 5.47 -17.82 -0.10 1.83 16 10 N -0.90 -26.60 13.96 55.43 0.77 -25.82 16 11 Si 0.87 20.43 27.37 -169.99 -4.65 15.78 16 12 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 13 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 14 H -0.27 -5.99 6.69 56.52 0.38 -5.61 16 15 C 0.12 1.89 5.60 -4.98 -0.03 1.87 16 16 C 0.00 0.05 5.26 -35.38 -0.19 -0.13 16 17 C -0.21 -3.00 10.45 -39.10 -0.41 -3.41 16 18 C 0.05 0.76 7.06 -82.47 -0.58 0.18 16 19 C -0.01 -0.16 5.88 -104.89 -0.62 -0.78 16 20 C -0.10 -1.15 9.70 -39.26 -0.38 -1.53 16 21 C -0.12 -1.19 10.03 -39.63 -0.40 -1.59 16 22 C -0.12 -1.04 10.04 -39.52 -0.40 -1.44 16 23 C -0.12 -1.15 10.03 -39.63 -0.40 -1.55 16 24 C -0.09 -1.06 9.60 -39.26 -0.38 -1.44 16 25 N -0.36 -5.75 11.82 33.32 0.39 -5.35 16 26 O 0.10 1.55 9.16 17.10 0.16 1.70 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.07 1.10 4.11 -51.93 -0.21 0.88 16 31 H 0.06 1.26 7.79 -51.93 -0.40 0.86 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.03 0.43 7.59 -51.93 -0.39 0.03 16 35 H 0.09 1.86 6.98 -51.93 -0.36 1.50 16 36 H -0.01 -0.18 7.45 -51.93 -0.39 -0.56 16 37 H 0.03 0.56 6.80 -51.93 -0.35 0.21 16 38 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 39 H 0.05 0.75 7.59 -51.92 -0.39 0.36 16 40 H 0.10 1.43 7.56 -51.93 -0.39 1.04 16 41 H 0.17 2.25 7.58 -52.49 -0.40 1.85 16 42 H 0.13 1.50 7.90 -52.48 -0.41 1.09 16 43 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 44 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 45 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 46 H 0.13 1.34 7.23 -52.48 -0.38 0.96 16 LS Contribution 373.50 15.07 5.63 5.63 Total: -1.00 -29.68 373.50 -9.41 -39.09 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -7.05 Total: 2.25 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: -3.78 Total: -22.63 kcal Atomic # 7 Polarization: -42.11 SS G_CDS: 0.29 Total: -41.82 kcal Atomic # 8 Polarization: 1.55 SS G_CDS: 0.16 Total: 1.70 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -4.65 Total: 15.78 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -29.68 -9.41 -39.09 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.920 kcal (2) G-P(sol) polarization free energy of solvation -29.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.094 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds