Wall clock time and date at job start Tue Mar 31 2020 11:30:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52989 * 109.47386 * 2 1 4 4 C 1.53002 * 109.46635 * 120.00283 * 2 1 3 5 5 N 1.46905 * 109.46574 * 178.62548 * 4 2 1 6 6 C 1.46896 * 111.00004 * 156.11281 * 5 4 2 7 7 C 1.50708 * 109.47315 * 287.80495 * 6 5 4 8 8 H 1.07998 * 119.99154 * 4.92460 * 7 6 5 9 9 C 1.37871 * 120.00351 * 184.93129 * 7 6 5 10 10 N 1.31514 * 119.99810 * 180.02562 * 9 7 6 11 11 Si 1.86801 * 119.99967 * 359.97438 * 9 7 6 12 12 H 1.48502 * 109.46385 * 90.00871 * 11 9 7 13 13 H 1.48500 * 109.46958 * 210.00375 * 11 9 7 14 14 H 1.48494 * 109.47525 * 330.00910 * 11 9 7 15 15 C 1.46899 * 111.00036 * 280.06400 * 5 4 2 16 16 C 1.50693 * 109.47342 * 80.03632 * 15 5 4 17 17 C 1.35231 * 126.65955 * 77.88043 * 16 15 5 18 18 C 1.42287 * 103.93304 * 179.97438 * 17 16 15 19 19 C 1.48445 * 126.93275 * 179.97438 * 18 17 16 20 20 C 1.39320 * 120.11643 * 180.02562 * 19 18 17 21 21 C 1.38017 * 119.88209 * 179.97438 * 20 19 18 22 22 C 1.38329 * 120.11705 * 359.97438 * 21 20 19 23 23 C 1.38319 * 120.23630 * 0.25649 * 22 21 20 24 24 C 1.38018 * 120.12161 * 359.49191 * 23 22 21 25 25 N 1.30984 * 106.12701 * 0.24094 * 18 17 16 26 26 O 1.20905 * 111.42731 * 359.57146 * 25 18 17 27 27 H 1.08995 * 109.47108 * 299.99943 * 1 2 3 28 28 H 1.09007 * 109.46854 * 60.00092 * 1 2 3 29 29 H 1.08997 * 109.47541 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46601 * 239.99420 * 2 1 3 31 31 H 1.08999 * 109.47452 * 184.85527 * 3 2 1 32 32 H 1.09002 * 109.46929 * 304.85219 * 3 2 1 33 33 H 1.09005 * 109.47427 * 64.85427 * 3 2 1 34 34 H 1.08998 * 109.47765 * 58.62996 * 4 2 1 35 35 H 1.08995 * 109.47424 * 298.61809 * 4 2 1 36 36 H 1.09000 * 109.47255 * 47.79863 * 6 5 4 37 37 H 1.08997 * 109.47454 * 167.80635 * 6 5 4 38 38 H 0.97007 * 119.99764 * 179.97438 * 10 9 7 39 39 H 1.09008 * 109.46973 * 320.03595 * 15 5 4 40 40 H 1.09004 * 109.47262 * 200.04063 * 15 5 4 41 41 H 1.07992 * 128.03310 * 359.95020 * 17 16 15 42 42 H 1.08003 * 120.06029 * 359.94918 * 20 19 18 43 43 H 1.07996 * 119.94413 * 180.02562 * 21 20 19 44 44 H 1.07994 * 119.88082 * 179.97438 * 22 21 20 45 45 H 1.08000 * 119.93907 * 179.74406 * 23 22 21 46 46 H 1.08005 * 120.06021 * 180.24817 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 1.2493 5 7 3.5086 -0.7502 1.2327 6 6 4.0475 -0.8958 2.5915 7 6 3.8557 0.3929 3.3489 8 1 3.3108 1.2086 2.8972 9 6 4.3760 0.5306 4.6182 10 7 4.2081 1.6550 5.2793 11 14 5.3181 -0.8806 5.3996 12 1 6.7596 -0.7588 5.0645 13 1 5.1469 -0.8337 6.8740 14 1 4.7967 -2.1709 4.8815 15 6 4.0043 -1.8168 0.3527 16 6 3.9479 -1.3528 -1.0800 17 6 4.8171 -0.5178 -1.6931 18 6 4.3125 -0.4114 -3.0192 19 6 4.8861 0.3886 -4.1303 20 6 4.2711 0.3903 -5.3805 21 6 4.8083 1.1363 -6.4100 22 6 5.9548 1.8817 -6.2021 23 6 6.5720 1.8798 -4.9643 24 6 6.0404 1.1415 -3.9264 25 7 3.2364 -1.1571 -3.0600 26 8 3.0264 -1.6882 -1.9943 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5139 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.8933 -0.5140 -0.8900 31 1 3.1266 1.4436 -0.0870 32 1 1.6075 1.9807 -0.8434 33 1 1.7495 1.9306 0.9303 34 1 1.6567 -1.7417 1.2617 35 1 1.6969 -0.1935 2.1391 36 1 3.5231 -1.7010 3.1060 37 1 5.1105 -1.1307 2.5375 38 1 4.5738 1.7518 6.1725 39 1 3.3829 -2.7044 0.4719 40 1 5.0344 -2.0563 0.6167 41 1 5.6911 -0.0420 -1.2736 42 1 3.3759 -0.1913 -5.5438 43 1 4.3322 1.1387 -7.3793 44 1 6.3721 2.4637 -7.0105 45 1 7.4693 2.4603 -4.8085 46 1 6.5209 1.1439 -2.9591 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000739913974.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:14 Heat of formation + Delta-G solvation = 70.587637 kcal Electronic energy + Delta-G solvation = -26262.097114 eV Core-core repulsion = 22733.268444 eV Total energy + Delta-G solvation = -3528.828670 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -45.88656 -40.01453 -39.27770 -35.71700 -35.34526 -34.66416 -33.21317 -31.89322 -31.25472 -29.83496 -27.97534 -27.80976 -25.63614 -25.06679 -23.96491 -22.83687 -22.40338 -21.16894 -20.86699 -19.03335 -18.54931 -18.26340 -17.45470 -16.81227 -16.64377 -16.24516 -15.99492 -15.72865 -15.31805 -15.06170 -14.80894 -14.50034 -14.43908 -14.26085 -13.98464 -13.97975 -13.88699 -13.51738 -13.20934 -12.96384 -12.79718 -12.57394 -12.41814 -12.26810 -12.23550 -11.95140 -11.90895 -11.83794 -11.70904 -11.52699 -11.44909 -11.24735 -10.71628 -10.31517 -9.91863 -9.47964 -9.07461 -8.21145 -6.23778 -0.13734 0.43933 0.61192 1.40518 1.42095 1.51772 1.55439 2.07182 2.39948 2.91615 3.03739 3.11340 3.28034 3.41204 3.94057 4.00363 4.04865 4.10501 4.14357 4.19572 4.25696 4.33171 4.35297 4.49568 4.54684 4.58401 4.66656 4.76623 4.79176 4.80571 4.86104 4.92901 4.99824 5.02813 5.07998 5.08651 5.11464 5.14990 5.25673 5.47897 5.50729 5.54029 5.54528 5.56028 5.59253 6.00433 6.01199 6.31663 6.64441 6.84343 7.25334 7.38968 8.95551 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.015073 B = 0.003538 C = 0.003250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.215978 B = 7912.723476 C = 8613.011842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.120 4.120 4 C 0.069 3.931 5 N -0.532 5.532 6 C 0.174 3.826 7 C -0.507 4.507 8 H 0.038 0.962 9 C 0.007 3.993 10 N -0.951 5.951 11 Si 0.945 3.055 12 H -0.265 1.265 13 H -0.290 1.290 14 H -0.245 1.245 15 C 0.125 3.875 16 C -0.001 4.001 17 C -0.210 4.210 18 C 0.052 3.948 19 C -0.043 4.043 20 C -0.111 4.111 21 C -0.124 4.124 22 C -0.109 4.109 23 C -0.122 4.122 24 C -0.104 4.104 25 N -0.380 5.380 26 O 0.091 5.909 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.064 0.936 30 H 0.070 0.930 31 H 0.046 0.954 32 H 0.044 0.956 33 H 0.032 0.968 34 H 0.043 0.957 35 H 0.056 0.944 36 H -0.004 1.004 37 H 0.040 0.960 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.120 0.880 41 H 0.182 0.818 42 H 0.119 0.881 43 H 0.149 0.851 44 H 0.155 0.845 45 H 0.152 0.848 46 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.688 -5.237 -20.770 21.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.113 4.113 3 C -0.178 4.178 4 C -0.059 4.059 5 N -0.256 5.256 6 C 0.048 3.952 7 C -0.545 4.545 8 H 0.056 0.944 9 C -0.190 4.190 10 N -0.593 5.593 11 Si 0.768 3.232 12 H -0.190 1.190 13 H -0.216 1.216 14 H -0.168 1.168 15 C -0.004 4.004 16 C -0.064 4.064 17 C -0.232 4.232 18 C -0.104 4.104 19 C -0.044 4.044 20 C -0.130 4.130 21 C -0.141 4.141 22 C -0.127 4.127 23 C -0.139 4.139 24 C -0.124 4.124 25 N -0.085 5.085 26 O 0.025 5.975 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.083 0.917 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.051 0.949 34 H 0.061 0.939 35 H 0.075 0.925 36 H 0.014 0.986 37 H 0.058 0.942 38 H 0.073 0.927 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.199 0.801 42 H 0.137 0.863 43 H 0.167 0.833 44 H 0.173 0.827 45 H 0.170 0.830 46 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 1.966 -5.045 -21.709 22.374 hybrid contribution 0.508 -0.458 1.754 1.882 sum 2.474 -5.503 -19.955 20.847 Atomic orbital electron populations 1.21754 0.94229 1.02127 1.01624 1.21229 0.95948 0.96240 0.97869 1.21508 1.00822 0.95963 0.99464 1.22173 0.86917 0.98638 0.98187 1.61623 1.08523 1.44677 1.10778 1.19994 0.95294 0.95029 0.84893 1.21233 1.34127 0.99829 0.99361 0.94362 1.25814 0.97283 0.98245 0.97659 1.70064 1.48068 1.27822 1.13315 0.85760 0.79572 0.80502 0.77343 1.19029 1.21642 1.16790 1.20717 1.03708 0.92875 0.83111 1.24395 0.89341 0.98637 0.94019 1.22549 1.04830 1.03432 0.92355 1.22254 0.93557 0.99291 0.95282 1.17932 0.96885 0.98423 0.91184 1.21320 0.99784 0.99481 0.92428 1.21408 0.96803 0.96586 0.99332 1.21679 0.95023 0.98090 0.97936 1.21453 1.00916 0.98870 0.92691 1.21383 0.94444 0.95890 1.00633 1.74023 1.18092 1.12788 1.03641 1.84749 1.43745 1.54243 1.14720 0.93133 0.92254 0.91738 0.91172 0.93483 0.93719 0.94891 0.93881 0.92507 0.98611 0.94184 0.92695 0.91000 0.86218 0.80079 0.86323 0.83323 0.82719 0.82987 0.84834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.94 9.19 71.98 0.66 -3.28 16 2 C -0.09 -3.11 2.69 -10.80 -0.03 -3.14 16 3 C -0.12 -4.40 8.98 71.98 0.65 -3.76 16 4 C 0.07 2.48 4.25 86.30 0.37 2.85 16 5 N -0.53 -19.79 3.71 -905.36 -3.36 -23.15 16 6 C 0.17 7.53 3.77 85.56 0.32 7.85 16 7 C -0.51 -27.73 8.95 25.60 0.23 -27.50 16 8 H 0.04 2.38 7.86 -2.91 -0.02 2.36 16 9 C 0.01 0.38 5.47 84.65 0.46 0.84 16 10 N -0.95 -58.34 13.96 21.44 0.30 -58.04 16 11 Si 0.94 41.81 27.37 68.60 1.88 43.69 16 12 H -0.27 -11.24 7.11 99.48 0.71 -10.53 16 13 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 14 H -0.24 -9.81 6.69 99.48 0.67 -9.14 16 15 C 0.12 3.60 5.60 85.56 0.48 4.08 16 16 C 0.00 -0.02 5.26 24.99 0.13 0.11 16 17 C -0.21 -6.01 10.45 22.58 0.24 -5.77 16 18 C 0.05 1.55 7.06 43.00 0.30 1.85 16 19 C -0.04 -1.12 5.88 -20.04 -0.12 -1.24 16 20 C -0.11 -2.58 9.70 22.48 0.22 -2.36 16 21 C -0.12 -2.13 10.03 22.24 0.22 -1.91 16 22 C -0.11 -1.62 10.04 22.31 0.22 -1.40 16 23 C -0.12 -2.03 10.03 22.24 0.22 -1.80 16 24 C -0.10 -2.26 9.60 22.48 0.22 -2.04 16 25 N -0.38 -11.96 11.82 -49.44 -0.58 -12.55 16 26 O 0.09 2.79 9.16 71.38 0.65 3.44 16 27 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 28 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.07 2.30 4.11 -2.38 -0.01 2.29 16 31 H 0.05 1.87 7.79 -2.39 -0.02 1.85 16 32 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.03 1.31 8.14 -2.38 -0.02 1.29 16 34 H 0.04 1.39 7.59 -2.39 -0.02 1.37 16 35 H 0.06 2.42 6.98 -2.39 -0.02 2.41 16 36 H 0.00 -0.16 7.45 -2.39 -0.02 -0.18 16 37 H 0.04 1.63 6.80 -2.39 -0.02 1.62 16 38 H 0.26 15.19 8.31 -92.70 -0.77 14.42 16 39 H 0.07 1.84 7.59 -2.38 -0.02 1.82 16 40 H 0.12 3.03 7.56 -2.38 -0.02 3.02 16 41 H 0.18 4.66 7.58 -2.91 -0.02 4.64 16 42 H 0.12 2.84 7.90 -2.91 -0.02 2.81 16 43 H 0.15 1.75 8.06 -2.91 -0.02 1.73 16 44 H 0.16 1.30 8.06 -2.91 -0.02 1.28 16 45 H 0.15 1.71 8.06 -2.91 -0.02 1.69 16 46 H 0.13 2.66 7.23 -2.91 -0.02 2.63 16 Total: -1.00 -66.68 373.50 4.60 -62.08 By element: Atomic # 1 Polarization: 20.24 SS G_CDS: 0.92 Total: 21.15 kcal Atomic # 6 Polarization: -41.42 SS G_CDS: 4.80 Total: -36.62 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -3.65 Total: -93.74 kcal Atomic # 8 Polarization: 2.79 SS G_CDS: 0.65 Total: 3.44 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 1.88 Total: 43.69 kcal Total: -66.68 4.60 -62.08 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000739913974.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.668 kcal (2) G-P(sol) polarization free energy of solvation -66.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.080 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds