Wall clock time and date at job start Tue Mar 31 2020 11:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47214 * 2 1 4 4 C 1.53005 * 109.46722 * 119.99604 * 2 1 3 5 5 N 1.46901 * 109.46821 * 63.94396 * 4 2 1 6 6 C 1.46898 * 110.99697 * 209.72364 * 5 4 2 7 7 C 1.50703 * 109.46803 * 71.97139 * 6 5 4 8 8 H 1.07998 * 120.00294 * 5.06510 * 7 6 5 9 9 C 1.37881 * 120.00053 * 185.06907 * 7 6 5 10 10 N 1.31522 * 119.99870 * 359.97438 * 9 7 6 11 11 Si 1.86795 * 120.00372 * 179.97438 * 9 7 6 12 12 H 1.48504 * 109.47059 * 0.02562 * 11 9 7 13 13 H 1.48501 * 109.47226 * 119.99797 * 11 9 7 14 14 H 1.48499 * 109.47458 * 240.00007 * 11 9 7 15 15 C 1.46906 * 111.00174 * 85.77641 * 5 4 2 16 16 C 1.50700 * 109.46678 * 288.20162 * 15 5 4 17 17 C 1.41004 * 126.70810 * 97.99656 * 16 15 5 18 18 C 1.36825 * 103.88629 * 179.97438 * 17 16 15 19 19 C 1.47840 * 126.92818 * 180.02562 * 18 17 16 20 20 C 1.39564 * 120.14506 * 179.97438 * 19 18 17 21 21 C 1.37966 * 119.85569 * 180.02562 * 20 19 18 22 22 C 1.38360 * 120.14217 * 359.97013 * 21 20 19 23 23 C 1.38356 * 120.29044 * 0.02723 * 22 21 20 24 24 C 1.37960 * 120.14286 * 0.02562 * 23 22 21 25 25 O 1.34500 * 106.14385 * 0.26197 * 18 17 16 26 26 N 1.20891 * 111.45268 * 359.52858 * 25 18 17 27 27 H 1.08996 * 109.47461 * 184.49296 * 1 2 3 28 28 H 1.09001 * 109.47339 * 304.49805 * 1 2 3 29 29 H 1.09009 * 109.46995 * 64.49604 * 1 2 3 30 30 H 1.09002 * 109.46995 * 239.99461 * 2 1 3 31 31 H 1.08997 * 109.46701 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.47023 * 299.99455 * 3 2 1 33 33 H 1.09000 * 109.47125 * 59.99562 * 3 2 1 34 34 H 1.08996 * 109.46955 * 303.94082 * 4 2 1 35 35 H 1.09004 * 109.46763 * 183.93897 * 4 2 1 36 36 H 1.08998 * 109.47308 * 191.96421 * 6 5 4 37 37 H 1.08995 * 109.47464 * 311.97026 * 6 5 4 38 38 H 0.96999 * 119.99737 * 179.97438 * 10 9 7 39 39 H 1.08991 * 109.47297 * 168.20434 * 15 5 4 40 40 H 1.08998 * 109.46980 * 48.19596 * 15 5 4 41 41 H 1.08009 * 128.05663 * 359.94262 * 17 16 15 42 42 H 1.07994 * 120.07294 * 0.02562 * 20 19 18 43 43 H 1.07991 * 119.92950 * 180.02562 * 21 20 19 44 44 H 1.07997 * 119.85291 * 179.74270 * 22 21 20 45 45 H 1.07994 * 119.92637 * 179.97438 * 23 22 21 46 46 H 1.08005 * 120.06949 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2494 5 7 1.6295 -2.1309 1.2027 6 6 1.4451 -2.6706 2.5565 7 6 0.1957 -2.0867 3.1640 8 1 -0.4453 -1.4493 2.5730 9 6 -0.1292 -2.3661 4.4746 10 7 0.6512 -3.1426 5.1943 11 14 -1.6774 -1.6418 5.2280 12 1 -2.3772 -0.8093 4.2168 13 1 -2.5735 -2.7404 5.6699 14 1 -1.3127 -0.8004 6.3960 15 6 2.5952 -2.9356 0.4423 16 6 2.4772 -2.6085 -1.0240 17 6 3.2913 -1.7214 -1.7578 18 6 2.7798 -1.7787 -3.0256 19 6 3.2602 -1.0382 -4.2115 20 6 2.6290 -1.2051 -5.4451 21 6 3.0826 -0.5114 -6.5481 22 6 4.1603 0.3486 -6.4331 23 6 4.7904 0.5186 -5.2131 24 6 4.3474 -0.1699 -4.1027 25 8 1.7485 -2.6405 -2.9741 26 7 1.6034 -3.0905 -1.8614 27 1 -0.3634 -1.0244 0.0805 28 1 -0.3634 0.5820 0.8469 29 1 -0.3633 0.4425 -0.9276 30 1 1.8933 -0.5139 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6767 1.9563 -0.8901 33 1 1.6766 1.9564 0.8899 34 1 1.6200 -0.2497 2.1378 35 1 3.1276 -0.6605 1.2854 36 1 1.3515 -3.7553 2.5056 37 1 2.3053 -2.4086 3.1724 38 1 0.4228 -3.3388 6.1164 39 1 2.3870 -3.9943 0.5963 40 1 3.6052 -2.7102 0.7847 41 1 4.1244 -1.1332 -1.4020 42 1 1.7874 -1.8757 -5.5360 43 1 2.5949 -0.6394 -7.5030 44 1 4.5141 0.8861 -7.3004 45 1 5.6313 1.1911 -5.1301 46 1 4.8398 -0.0359 -3.1508 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000755670950.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:30:19 Heat of formation + Delta-G solvation = 83.781802 kcal Electronic energy + Delta-G solvation = -26306.972677 eV Core-core repulsion = 22778.716149 eV Total energy + Delta-G solvation = -3528.256528 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 314.174 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.70864 -39.30699 -37.76717 -34.21536 -33.93655 -33.14931 -32.17325 -31.24091 -29.52769 -27.81239 -26.61723 -26.41643 -24.21713 -23.81908 -23.07428 -22.01205 -21.00536 -19.80884 -19.42725 -17.93478 -17.31692 -16.46004 -16.27428 -15.75063 -15.12617 -15.07721 -14.58478 -14.38516 -14.09690 -13.79863 -13.62386 -13.42507 -13.31537 -13.18390 -12.86772 -12.43594 -12.13292 -11.85710 -11.73093 -11.51758 -11.40109 -11.36843 -11.07780 -10.92020 -10.80424 -10.72424 -10.54357 -10.33770 -10.24979 -9.98299 -9.80728 -9.37806 -9.27182 -9.12521 -8.43597 -8.39435 -7.31201 -6.02367 -4.02984 0.50567 1.09336 1.98911 2.48275 3.08549 3.31363 3.39150 3.44644 3.57326 4.34506 4.41661 4.46114 4.63669 4.68341 4.78910 4.93623 5.09523 5.16218 5.18660 5.32869 5.37179 5.42854 5.49217 5.52207 5.66315 5.72407 5.76825 5.89050 5.97931 5.98980 6.13109 6.14768 6.18578 6.18966 6.25446 6.27319 6.34852 6.48138 6.55192 6.61156 6.64913 6.94849 7.07993 7.23353 7.31165 7.83383 8.06845 8.16072 8.50433 8.53520 9.06351 9.61295 11.08228 Molecular weight = 314.17amu Principal moments of inertia in cm(-1) A = 0.024309 B = 0.003123 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1151.570221 B = 8964.581703 C = 9286.297348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.102 4.102 3 C -0.143 4.143 4 C 0.068 3.932 5 N -0.526 5.526 6 C 0.194 3.806 7 C -0.501 4.501 8 H 0.066 0.934 9 C 0.054 3.946 10 N -0.900 5.900 11 Si 0.895 3.105 12 H -0.272 1.272 13 H -0.284 1.284 14 H -0.285 1.285 15 C 0.125 3.875 16 C 0.050 3.950 17 C -0.202 4.202 18 C -0.011 4.011 19 C -0.010 4.010 20 C -0.098 4.098 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.118 4.118 24 C -0.094 4.094 25 O 0.103 5.897 26 N -0.342 5.342 27 H 0.071 0.929 28 H 0.047 0.953 29 H 0.031 0.969 30 H 0.072 0.928 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.053 0.947 34 H 0.083 0.917 35 H 0.020 0.980 36 H 0.027 0.973 37 H -0.002 1.002 38 H 0.260 0.740 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.168 0.832 42 H 0.132 0.868 43 H 0.127 0.873 44 H 0.124 0.876 45 H 0.128 0.872 46 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.531 7.593 -21.297 24.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.121 4.121 3 C -0.201 4.201 4 C -0.061 4.061 5 N -0.251 5.251 6 C 0.070 3.930 7 C -0.539 4.539 8 H 0.085 0.915 9 C -0.147 4.147 10 N -0.540 5.540 11 Si 0.723 3.277 12 H -0.196 1.196 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.004 4.004 16 C -0.109 4.109 17 C -0.223 4.223 18 C -0.074 4.074 19 C -0.011 4.011 20 C -0.116 4.116 21 C -0.136 4.136 22 C -0.132 4.132 23 C -0.136 4.136 24 C -0.112 4.112 25 O 0.034 5.966 26 N -0.044 5.044 27 H 0.090 0.910 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.039 0.961 36 H 0.045 0.955 37 H 0.015 0.985 38 H 0.070 0.930 39 H 0.105 0.895 40 H 0.066 0.934 41 H 0.185 0.815 42 H 0.150 0.850 43 H 0.145 0.855 44 H 0.142 0.858 45 H 0.146 0.854 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 8.067 6.580 -21.189 23.608 hybrid contribution 0.599 0.918 1.169 1.603 sum 8.666 7.499 -20.020 23.068 Atomic orbital electron populations 1.21651 0.94984 1.03049 0.99268 1.21414 0.96813 0.94634 0.99250 1.21800 1.00044 0.97060 1.01172 1.22115 0.96042 0.89575 0.98329 1.61964 1.42957 1.01050 1.19140 1.19788 0.96585 0.95385 0.81271 1.21199 1.07255 1.29613 0.95876 0.91542 1.24984 0.97062 0.95470 0.97141 1.69968 1.37765 1.37288 1.08958 0.86473 0.83199 0.78925 0.79054 1.19614 1.21058 1.21173 1.20454 0.95426 0.99657 0.84854 1.23484 0.92661 0.96207 0.98586 1.22496 1.04219 1.03767 0.91816 1.22378 0.92357 0.97337 0.95329 1.17646 0.96649 0.97013 0.89837 1.21332 0.99502 0.99172 0.91619 1.21106 0.97079 0.96838 0.98603 1.21298 0.95947 0.98215 0.97739 1.21061 1.00261 0.99734 0.92519 1.21127 0.95306 0.95389 0.99399 1.84938 1.40714 1.44686 1.26269 1.73848 1.20935 1.19043 0.90554 0.90954 0.93355 0.95015 0.91014 0.93549 0.93438 0.92836 0.89882 0.96137 0.95492 0.98461 0.93029 0.89523 0.93357 0.81474 0.85050 0.85501 0.85794 0.85421 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.41 9.13 37.16 0.34 -2.07 16 2 C -0.10 -1.71 2.80 -90.62 -0.25 -1.97 16 3 C -0.14 -2.00 9.19 37.16 0.34 -1.66 16 4 C 0.07 1.29 4.21 -3.82 -0.02 1.28 16 5 N -0.53 -11.16 3.68 -237.52 -0.87 -12.04 16 6 C 0.19 4.95 4.68 -4.98 -0.02 4.93 16 7 C -0.50 -13.90 8.31 -34.44 -0.29 -14.18 16 8 H 0.07 1.86 7.81 -52.49 -0.41 1.45 16 9 C 0.05 1.54 5.46 -17.82 -0.10 1.44 16 10 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 11 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 12 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 14 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 15 C 0.13 2.29 5.53 -4.97 -0.03 2.26 16 16 C 0.05 0.83 5.12 -82.20 -0.42 0.41 16 17 C -0.20 -2.74 8.06 -39.05 -0.31 -3.06 16 18 C -0.01 -0.15 7.10 -36.17 -0.26 -0.40 16 19 C -0.01 -0.11 5.87 -104.98 -0.62 -0.73 16 20 C -0.10 -0.94 9.74 -39.19 -0.38 -1.32 16 21 C -0.12 -0.91 10.03 -39.64 -0.40 -1.31 16 22 C -0.11 -0.81 10.04 -39.49 -0.40 -1.20 16 23 C -0.12 -0.88 10.03 -39.64 -0.40 -1.28 16 24 C -0.09 -0.85 9.59 -39.19 -0.38 -1.23 16 25 O 0.10 1.59 11.04 15.94 0.18 1.77 16 26 N -0.34 -6.08 12.05 33.51 0.40 -5.67 16 27 H 0.07 1.52 7.60 -51.93 -0.39 1.13 16 28 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 29 H 0.03 0.52 8.14 -51.92 -0.42 0.09 16 30 H 0.07 1.18 3.41 -51.93 -0.18 1.01 16 31 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 34 H 0.08 1.79 7.05 -51.93 -0.37 1.42 16 35 H 0.02 0.36 7.60 -51.93 -0.39 -0.03 16 36 H 0.03 0.73 7.73 -51.93 -0.40 0.33 16 37 H 0.00 -0.07 8.05 -51.93 -0.42 -0.49 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.09 1.63 7.73 -51.93 -0.40 1.23 16 40 H 0.05 0.80 7.74 -51.93 -0.40 0.40 16 41 H 0.17 1.86 7.47 -52.48 -0.39 1.47 16 42 H 0.13 1.17 7.96 -52.49 -0.42 0.76 16 43 H 0.13 0.70 8.06 -52.49 -0.42 0.27 16 44 H 0.12 0.59 8.06 -52.49 -0.42 0.16 16 45 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 46 H 0.13 1.00 7.16 -52.48 -0.38 0.63 16 LS Contribution 376.34 15.07 5.67 5.67 Total: -1.00 -30.80 376.34 -9.56 -40.35 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -7.07 Total: -0.92 kcal Atomic # 6 Polarization: -16.51 SS G_CDS: -3.58 Total: -20.09 kcal Atomic # 7 Polarization: -43.82 SS G_CDS: 0.27 Total: -43.55 kcal Atomic # 8 Polarization: 1.59 SS G_CDS: 0.18 Total: 1.77 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.80 -9.56 -40.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000755670950.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.136 kcal (2) G-P(sol) polarization free energy of solvation -30.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.558 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.354 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds